data_9F9
# 
_chem_comp.id                                    9F9 
_chem_comp.name                                  "N-[1,3-dimethyl-2-oxo-6-(piperidin-1-yl)-2,3-dihydro-1H-benzimidazol-5-yl]-2-methoxybenzamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H26 N4 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-08-30 
_chem_comp.pdbx_modified_date                    2014-09-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        394.467 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     9F9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4UYE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
9F9 C01  C01  C 0 1 N N N -29.242 46.475 0.581  4.859  3.405  1.122  C01  9F9 1  
9F9 O05  O05  O 0 1 N N N -28.199 45.745 1.244  3.847  2.487  0.703  O05  9F9 2  
9F9 C06  C06  C 0 1 Y N N -28.184 44.386 1.078  4.264  1.302  0.192  C06  9F9 3  
9F9 C07  C07  C 0 1 Y N N -29.053 43.738 0.208  5.620  1.024  0.093  C07  9F9 4  
9F9 C09  C09  C 0 1 Y N N -28.984 42.362 0.079  6.043  -0.182 -0.427 C09  9F9 5  
9F9 C11  C11  C 0 1 Y N N -28.082 41.638 0.824  5.120  -1.123 -0.855 C11  9F9 6  
9F9 C13  C13  C 0 1 Y N N -27.222 42.272 1.697  3.770  -0.864 -0.765 C13  9F9 7  
9F9 C15  C15  C 0 1 Y N N -27.273 43.665 1.863  3.328  0.350  -0.234 C15  9F9 8  
9F9 C16  C16  C 0 1 N N N -26.252 44.209 2.821  1.883  0.632  -0.128 C16  9F9 9  
9F9 O17  O17  O 0 1 N N N -25.575 43.461 3.520  1.503  1.692  0.329  O17  9F9 10 
9F9 N18  N18  N 0 1 N N N -26.077 45.554 2.819  0.986  -0.286 -0.539 N18  9F9 11 
9F9 C20  C20  C 0 1 Y N N -25.124 46.358 3.508  -0.385 -0.059 -0.352 C20  9F9 12 
9F9 C21  C21  C 0 1 Y N N -24.460 45.850 4.628  -0.893 1.227  -0.447 C21  9F9 13 
9F9 C23  C23  C 0 1 Y N N -23.496 46.630 5.246  -2.249 1.450  -0.262 C23  9F9 14 
9F9 N24  N24  N 0 1 N N N -22.696 46.424 6.359  -3.040 2.599  -0.293 N24  9F9 15 
9F9 C25  C25  C 0 1 N N N -22.680 45.229 7.206  -2.566 3.960  -0.555 C25  9F9 16 
9F9 C29  C29  C 0 1 N N N -21.888 47.526 6.556  -4.314 2.243  -0.041 C29  9F9 17 
9F9 O30  O30  O 0 1 N N N -21.060 47.673 7.444  -5.259 3.007  0.004  O30  9F9 18 
9F9 N31  N31  N 0 1 N N N -22.202 48.423 5.557  -4.383 0.912  0.151  N31  9F9 19 
9F9 C32  C32  C 0 1 N N N -21.556 49.741 5.401  -5.600 0.151  0.448  C32  9F9 20 
9F9 C36  C36  C 0 1 Y N N -23.193 47.886 4.742  -3.101 0.381  0.019  C36  9F9 21 
9F9 C37  C37  C 0 1 Y N N -23.854 48.362 3.633  -2.592 -0.906 0.114  C37  9F9 22 
9F9 C39  C39  C 0 1 Y N N -24.841 47.615 2.946  -1.238 -1.128 -0.077 C39  9F9 23 
9F9 N40  N40  N 0 1 N N N -25.447 48.085 1.791  -0.723 -2.428 0.013  N40  9F9 24 
9F9 C41  C41  C 0 1 N N N -24.916 47.463 0.571  -1.342 -3.310 -0.985 C41  9F9 25 
9F9 C44  C44  C 0 1 N N N -25.798 47.695 -0.633 -0.656 -4.677 -0.957 C44  9F9 26 
9F9 C47  C47  C 0 1 N N N -26.147 49.171 -0.762 -0.795 -5.283 0.442  C47  9F9 27 
9F9 C50  C50  C 0 1 N N N -26.738 49.694 0.522  -0.185 -4.324 1.468  C50  9F9 28 
9F9 C53  C53  C 0 1 N N N -25.787 49.500 1.662  -0.885 -2.967 1.369  C53  9F9 29 
9F9 H011 H011 H 0 0 N N N -29.135 47.548 0.799  5.493  3.660  0.272  H011 9F9 30 
9F9 H012 H012 H 0 0 N N N -29.170 46.312 -0.505 4.391  4.310  1.510  H012 9F9 31 
9F9 H013 H013 H 0 0 N N N -30.221 46.124 0.941  5.465  2.947  1.903  H013 9F9 32 
9F9 H07  H07  H 0 1 N N N -29.775 44.303 -0.362 6.345  1.753  0.424  H07  9F9 33 
9F9 H09  H09  H 0 1 N N N -29.642 41.854 -0.610 7.099  -0.394 -0.502 H09  9F9 34 
9F9 H11  H11  H 0 1 N N N -28.047 40.563 0.725  5.461  -2.065 -1.261 H11  9F9 35 
9F9 H13  H13  H 0 1 N N N -26.504 41.692 2.257  3.054  -1.600 -1.099 H13  9F9 36 
9F9 H18  H18  H 0 1 N N N -26.718 46.061 2.243  1.289  -1.104 -0.964 H18  9F9 37 
9F9 H21  H21  H 0 1 N N N -24.694 44.866 5.006  -0.233 2.055  -0.665 H21  9F9 38 
9F9 H251 H251 H 0 0 N N N -21.942 45.359 8.011  -2.610 4.161  -1.625 H251 9F9 39 
9F9 H252 H252 H 0 0 N N N -23.677 45.077 7.644  -3.199 4.673  -0.026 H252 9F9 40 
9F9 H253 H253 H 0 0 N N N -22.409 44.353 6.599  -1.538 4.060  -0.207 H253 9F9 41 
9F9 H321 H321 H 0 0 N N N -21.985 50.259 4.531  -6.451 0.830  0.491  H321 9F9 42 
9F9 H322 H322 H 0 0 N N N -21.726 50.342 6.306  -5.765 -0.589 -0.335 H322 9F9 43 
9F9 H323 H323 H 0 0 N N N -20.475 49.604 5.250  -5.488 -0.353 1.408  H323 9F9 44 
9F9 H37  H37  H 0 1 N N N -23.609 49.349 3.271  -3.251 -1.733 0.331  H37  9F9 45 
9F9 H411 H411 H 0 0 N N N -23.921 47.885 0.365  -2.401 -3.430 -0.757 H411 9F9 46 
9F9 H412 H412 H 0 0 N N N -24.827 46.379 0.738  -1.233 -2.869 -1.977 H412 9F9 47 
9F9 H531 H531 H 0 0 N N N -26.258 49.848 2.593  -0.444 -2.277 2.089  H531 9F9 48 
9F9 H532 H532 H 0 0 N N N -24.871 50.080 1.475  -1.946 -3.088 1.587  H532 9F9 49 
9F9 H441 H441 H 0 0 N N N -25.267 47.368 -1.539 -1.126 -5.336 -1.687 H441 9F9 50 
9F9 H442 H442 H 0 0 N N N -26.724 47.113 -0.521 0.400  -4.559 -1.199 H442 9F9 51 
9F9 H471 H471 H 0 0 N N N -25.234 49.738 -0.997 -1.849 -5.437 0.670  H471 9F9 52 
9F9 H472 H472 H 0 0 N N N -26.878 49.299 -1.574 -0.270 -6.238 0.480  H472 9F9 53 
9F9 H501 H501 H 0 0 N N N -26.952 50.767 0.410  -0.319 -4.730 2.471  H501 9F9 54 
9F9 H502 H502 H 0 0 N N N -27.672 49.154 0.736  0.878  -4.200 1.264  H502 9F9 55 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
9F9 C01 O05  SING N N 1  
9F9 O05 C06  SING N N 2  
9F9 C06 C07  SING Y N 3  
9F9 C06 C15  DOUB Y N 4  
9F9 C07 C09  DOUB Y N 5  
9F9 C09 C11  SING Y N 6  
9F9 C11 C13  DOUB Y N 7  
9F9 C13 C15  SING Y N 8  
9F9 C15 C16  SING N N 9  
9F9 C16 O17  DOUB N N 10 
9F9 C16 N18  SING N N 11 
9F9 N18 C20  SING N N 12 
9F9 C20 C21  SING Y N 13 
9F9 C20 C39  DOUB Y N 14 
9F9 C21 C23  DOUB Y N 15 
9F9 C23 N24  SING N N 16 
9F9 C23 C36  SING Y N 17 
9F9 N24 C25  SING N N 18 
9F9 N24 C29  SING N N 19 
9F9 C29 O30  DOUB N N 20 
9F9 C29 N31  SING N N 21 
9F9 N31 C32  SING N N 22 
9F9 N31 C36  SING N N 23 
9F9 C36 C37  DOUB Y N 24 
9F9 C37 C39  SING Y N 25 
9F9 C39 N40  SING N N 26 
9F9 N40 C41  SING N N 27 
9F9 N40 C53  SING N N 28 
9F9 C41 C44  SING N N 29 
9F9 C44 C47  SING N N 30 
9F9 C47 C50  SING N N 31 
9F9 C50 C53  SING N N 32 
9F9 C01 H011 SING N N 33 
9F9 C01 H012 SING N N 34 
9F9 C01 H013 SING N N 35 
9F9 C07 H07  SING N N 36 
9F9 C09 H09  SING N N 37 
9F9 C11 H11  SING N N 38 
9F9 C13 H13  SING N N 39 
9F9 N18 H18  SING N N 40 
9F9 C21 H21  SING N N 41 
9F9 C25 H251 SING N N 42 
9F9 C25 H252 SING N N 43 
9F9 C25 H253 SING N N 44 
9F9 C32 H321 SING N N 45 
9F9 C32 H322 SING N N 46 
9F9 C32 H323 SING N N 47 
9F9 C37 H37  SING N N 48 
9F9 C41 H411 SING N N 49 
9F9 C41 H412 SING N N 50 
9F9 C53 H531 SING N N 51 
9F9 C53 H532 SING N N 52 
9F9 C44 H441 SING N N 53 
9F9 C44 H442 SING N N 54 
9F9 C47 H471 SING N N 55 
9F9 C47 H472 SING N N 56 
9F9 C50 H501 SING N N 57 
9F9 C50 H502 SING N N 58 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
9F9 SMILES           ACDLabs              12.01 "O=C(c1ccccc1OC)Nc2cc4c(cc2N3CCCCC3)N(C(=O)N4C)C"                                                                                                               
9F9 InChI            InChI                1.03  "InChI=1S/C22H26N4O3/c1-24-18-13-16(23-21(27)15-9-5-6-10-20(15)29-3)17(26-11-7-4-8-12-26)14-19(18)25(2)22(24)28/h5-6,9-10,13-14H,4,7-8,11-12H2,1-3H3,(H,23,27)" 
9F9 InChIKey         InChI                1.03  LTUGYAOMCKNTGG-UHFFFAOYSA-N                                                                                                                                     
9F9 SMILES_CANONICAL CACTVS               3.385 "COc1ccccc1C(=O)Nc2cc3N(C)C(=O)N(C)c3cc2N4CCCCC4"                                                                                                               
9F9 SMILES           CACTVS               3.385 "COc1ccccc1C(=O)Nc2cc3N(C)C(=O)N(C)c3cc2N4CCCCC4"                                                                                                               
9F9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1c2cc(c(cc2N(C1=O)C)N3CCCCC3)NC(=O)c4ccccc4OC"                                                                                                               
9F9 SMILES           "OpenEye OEToolkits" 1.7.6 "CN1c2cc(c(cc2N(C1=O)C)N3CCCCC3)NC(=O)c4ccccc4OC"                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
9F9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-[1,3-dimethyl-2-oxo-6-(piperidin-1-yl)-2,3-dihydro-1H-benzimidazol-5-yl]-2-methoxybenzamide" 
9F9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-(1,3-dimethyl-2-oxidanylidene-6-piperidin-1-yl-benzimidazol-5-yl)-2-methoxy-benzamide"       
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
9F9 "Create component" 2014-08-30 EBI  
9F9 "Initial release"  2014-09-17 RCSB 
# 
