data_BY9
#

_chem_comp.id                                   BY9
_chem_comp.name                                 "12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C26 H21 N3 O7"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "rebeccamycin analogue"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-11-04
_chem_comp.pdbx_modified_date                   2020-11-20
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       487.461
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    BY9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6UV6
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
BY9  C1   C1   C  0  1  Y  N  N  20.202   8.451  -16.108  -1.918   4.351  -0.237  C1   BY9   1  
BY9  C10  C2   C  0  1  Y  N  N  15.170   9.949  -13.159  -2.593  -1.637  -0.004  C10  BY9   2  
BY9  C11  C3   C  0  1  Y  N  N  15.065   8.570  -12.932  -1.193  -1.635   0.020  C11  BY9   3  
BY9  C12  C4   C  0  1  Y  N  N  14.164   7.695  -12.198  -0.182  -2.703   0.081  C12  BY9   4  
BY9  C13  C5   C  0  1  Y  N  N  13.074   7.905  -11.357  -0.259  -4.094   0.137  C13  BY9   5  
BY9  C14  C6   C  0  1  Y  N  N  12.464   6.826  -10.743   0.898  -4.841   0.187  C14  BY9   6  
BY9  C15  C7   C  0  1  Y  N  N  12.920   5.538  -10.960   2.135  -4.215   0.184  C15  BY9   7  
BY9  C16  C8   C  0  1  Y  N  N  13.992   5.300  -11.803   2.226  -2.841   0.129  C16  BY9   8  
BY9  C17  C9   C  0  1  Y  N  N  14.610   6.380  -12.415   1.070  -2.068   0.077  C17  BY9   9  
BY9  C18  C10  C  0  1  Y  N  N  16.028   7.734  -13.530  -0.487  -0.421  -0.018  C18  BY9  10  
BY9  C19  C11  C  0  1  Y  N  N  17.106   8.261  -14.263  -1.186   0.791  -0.079  C19  BY9  11  
BY9  C2   C12  C  0  1  Y  N  N  20.829   9.579  -16.613  -3.153   4.962  -0.289  C2   BY9  12  
BY9  C20  C13  C  0  1  Y  N  N  19.007   8.608  -15.419  -1.829   2.964  -0.179  C20  BY9  13  
BY9  C21  C14  C  0  1  N  N  R  16.332   5.255  -13.897   1.929   0.304  -0.005  C21  BY9  14  
BY9  C22  C15  C  0  1  N  N  R  16.111   5.268  -15.410   2.533   0.439   1.395  C22  BY9  15  
BY9  C23  C16  C  0  1  N  N  S  16.882   4.125  -16.055   3.685   1.448   1.351  C23  BY9  16  
BY9  C24  C17  C  0  1  N  N  S  18.379   4.278  -15.706   4.715   0.985   0.315  C24  BY9  17  
BY9  C25  C18  C  0  1  N  N  R  18.408   4.150  -14.168   4.027   0.829  -1.043  C25  BY9  18  
BY9  C26  C19  C  0  1  N  N  N  19.807   4.165  -13.589   5.035   0.310  -2.069  C26  BY9  19  
BY9  C3   C20  C  0  1  Y  N  N  20.273  10.836  -16.434  -4.315   4.206  -0.285  C3   BY9  20  
BY9  C4   C21  C  0  1  Y  N  N  19.083  10.994  -15.740  -4.249   2.831  -0.227  C4   BY9  21  
BY9  C5   C22  C  0  1  Y  N  N  18.435   9.879  -15.220  -3.007   2.200  -0.169  C5   BY9  22  
BY9  C6   C23  C  0  1  Y  N  N  17.211   9.660  -14.465  -2.590   0.789  -0.104  C6   BY9  23  
BY9  C7   C24  C  0  1  Y  N  N  16.216  10.484  -13.915  -3.295  -0.421  -0.067  C7   BY9  24  
BY9  C8   C25  C  0  1  N  N  N  16.011  11.952  -14.001  -4.725  -0.777  -0.077  C8   BY9  25  
BY9  C9   C26  C  0  1  N  N  N  14.286  11.073  -12.756  -3.619  -2.695   0.021  C9   BY9  26  
BY9  N1   N1   N  0  1  N  N  N  14.853  12.212  -13.293  -4.833  -2.117  -0.024  N1   BY9  27  
BY9  N2   N2   N  0  1  Y  N  N  15.726   6.409  -13.258   0.865  -0.702   0.017  N2   BY9  28  
BY9  N3   N3   N  0  1  Y  N  N  18.198   7.646  -14.843  -0.751   2.101  -0.124  N3   BY9  29  
BY9  O1   O1   O  0  1  N  N  N  16.702  12.793  -14.568  -5.651   0.008  -0.125  O1   BY9  30  
BY9  O2   O2   O  0  1  N  N  N  13.253  11.039  -12.090  -3.405  -3.890   0.074  O2   BY9  31  
BY9  O3   O3   O  0  1  N  N  N  14.720   5.115  -15.677   1.531   0.896   2.306  O3   BY9  32  
BY9  O4   O4   O  0  1  N  N  N  16.818   4.246  -17.471   4.302   1.526   2.637  O4   BY9  33  
BY9  O5   O5   O  0  1  N  N  N  19.113   3.220  -16.211   5.758   1.957   0.213  O5   BY9  34  
BY9  O6   O6   O  0  1  N  N  N  17.719   5.275  -13.602   2.947  -0.099  -0.924  O6   BY9  35  
BY9  O7   O7   O  0  1  N  N  N  20.587   5.195  -14.157   4.425   0.275  -3.361  O7   BY9  36  
BY9  H20  H1   H  0  1  N  N  N  20.634   7.471  -16.247  -1.019   4.950  -0.245  H20  BY9  37  
BY9  H5   H2   H  0  1  N  N  N  12.707   8.906  -11.185  -1.221  -4.584   0.141  H5   BY9  38  
BY9  H6   H4   H  0  1  N  N  N  11.622   6.991  -10.087   0.841  -5.919   0.230  H6   BY9  39  
BY9  H7   H5   H  0  1  N  N  N  12.434   4.709  -10.466   3.036  -4.810   0.224  H7   BY9  40  
BY9  H21  H6   H  0  1  N  N  N  14.340   4.293  -11.980   3.195  -2.364   0.128  H21  BY9  41  
BY9  H1   H8   H  0  1  N  N  N  21.760   9.478  -17.151  -3.215   6.040  -0.334  H1   BY9  42  
BY9  H9   H9   H  0  1  N  N  N  15.880   4.338  -13.492   1.516   1.263  -0.317  H9   BY9  43  
BY9  H10  H10  H  0  1  N  N  N  16.477   6.222  -15.816   2.910  -0.530   1.724  H10  BY9  44  
BY9  H11  H11  H  0  1  N  N  N  16.504   3.154  -15.703   3.300   2.428   1.070  H11  BY9  45  
BY9  H12  H12  H  0  1  N  N  N  18.756   5.261  -16.024   5.136   0.028   0.623  H12  BY9  46  
BY9  H13  H13  H  0  1  N  N  N  17.908   3.213  -13.881   3.641   1.796  -1.368  H13  BY9  47  
BY9  H14  H14  H  0  1  N  N  N  19.743   4.322  -12.502   5.901   0.972  -2.095  H14  BY9  48  
BY9  H15  H15  H  0  1  N  N  N  20.289   3.197  -13.792   5.353  -0.694  -1.790  H15  BY9  49  
BY9  H2   H16  H  0  1  N  N  N  20.773  11.703  -16.840  -5.276   4.697  -0.326  H2   BY9  50  
BY9  H3   H17  H  0  1  N  N  N  18.661  11.979  -15.604  -5.155   2.244  -0.223  H3   BY9  51  
BY9  H4   H18  H  0  1  N  N  N  14.467  13.128  -13.181  -5.673  -2.601  -0.019  H4   BY9  52  
BY9  H8   H19  H  0  1  N  N  N  18.375   6.662  -14.846   0.179   2.377  -0.118  H8   BY9  53  
BY9  H22  H20  H  0  1  N  N  N  14.239   5.829  -15.274   1.845   1.004   3.214  H22  BY9  54  
BY9  H16  H21  H  0  1  N  N  N  15.916   4.161  -17.756   5.046   2.143   2.680  H16  BY9  55  
BY9  H18  H22  H  0  1  N  N  N  20.029   3.333  -15.986   6.235   2.110   1.041  H18  BY9  56  
BY9  H23  H23  H  0  1  N  N  N  21.457   5.181  -13.776   5.009  -0.045  -4.063  H23  BY9  57  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
BY9  O4   C23  SING  N  N   1  
BY9  C2   C3   DOUB  Y  N   2  
BY9  C2   C1   SING  Y  N   3  
BY9  C3   C4   SING  Y  N   4  
BY9  O5   C24  SING  N  N   5  
BY9  C1   C20  DOUB  Y  N   6  
BY9  C23  C24  SING  N  N   7  
BY9  C23  C22  SING  N  N   8  
BY9  C4   C5   DOUB  Y  N   9  
BY9  C24  C25  SING  N  N  10  
BY9  O3   C22  SING  N  N  11  
BY9  C20  C5   SING  Y  N  12  
BY9  C20  N3   SING  Y  N  13  
BY9  C22  C21  SING  N  N  14  
BY9  C5   C6   SING  Y  N  15  
BY9  N3   C19  SING  Y  N  16  
BY9  O1   C8   DOUB  N  N  17  
BY9  C6   C19  DOUB  Y  N  18  
BY9  C6   C7   SING  Y  N  19  
BY9  C19  C18  SING  Y  N  20  
BY9  C25  O6   SING  N  N  21  
BY9  C25  C26  SING  N  N  22  
BY9  O7   C26  SING  N  N  23  
BY9  C8   C7   SING  N  N  24  
BY9  C8   N1   SING  N  N  25  
BY9  C7   C10  DOUB  Y  N  26  
BY9  C21  O6   SING  N  N  27  
BY9  C21  N2   SING  N  N  28  
BY9  C18  N2   SING  Y  N  29  
BY9  C18  C11  DOUB  Y  N  30  
BY9  N1   C9   SING  N  N  31  
BY9  N2   C17  SING  Y  N  32  
BY9  C10  C11  SING  Y  N  33  
BY9  C10  C9   SING  N  N  34  
BY9  C11  C12  SING  Y  N  35  
BY9  C9   O2   DOUB  N  N  36  
BY9  C17  C12  DOUB  Y  N  37  
BY9  C17  C16  SING  Y  N  38  
BY9  C12  C13  SING  Y  N  39  
BY9  C16  C15  DOUB  Y  N  40  
BY9  C13  C14  DOUB  Y  N  41  
BY9  C15  C14  SING  Y  N  42  
BY9  C1   H20  SING  N  N  43  
BY9  C13  H5   SING  N  N  44  
BY9  C14  H6   SING  N  N  45  
BY9  C15  H7   SING  N  N  46  
BY9  C16  H21  SING  N  N  47  
BY9  C2   H1   SING  N  N  48  
BY9  C21  H9   SING  N  N  49  
BY9  C22  H10  SING  N  N  50  
BY9  C23  H11  SING  N  N  51  
BY9  C24  H12  SING  N  N  52  
BY9  C25  H13  SING  N  N  53  
BY9  C26  H14  SING  N  N  54  
BY9  C26  H15  SING  N  N  55  
BY9  C3   H2   SING  N  N  56  
BY9  C4   H3   SING  N  N  57  
BY9  N1   H4   SING  N  N  58  
BY9  N3   H8   SING  N  N  59  
BY9  O3   H22  SING  N  N  60  
BY9  O4   H16  SING  N  N  61  
BY9  O5   H18  SING  N  N  62  
BY9  O7   H23  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
BY9  SMILES            ACDLabs               12.01  "c1c7c(ccc1)c3c(c5c(c2C(=O)NC(c23)=O)c4ccccc4n5C6OC(C(C(C6O)O)O)CO)n7"  
BY9  InChI             InChI                 1.03   "InChI=1S/C26H21N3O7/c30-9-14-21(31)22(32)23(33)26(36-14)29-13-8-4-2-6-11(13)16-18-17(24(34)28-25(18)35)15-10-5-1-3-7-12(10)27-19(15)20(16)29/h1-8,14,21-23,26-27,30-33H,9H2,(H,28,34,35)/t14-,21-,22+,23-,26-/m1/s1"  
BY9  InChIKey          InChI                 1.03   FAKJOUAYZNXZGV-QCUUGYDUSA-N  
BY9  SMILES_CANONICAL  CACTVS                3.385  "OC[C@H]1O[C@H]([C@H](O)[C@@H](O)[C@@H]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7C(=O)NC(=O)c47"  
BY9  SMILES            CACTVS                3.385  "OC[CH]1O[CH]([CH](O)[CH](O)[CH]1O)n2c3ccccc3c4c2c5[nH]c6ccccc6c5c7C(=O)NC(=O)c47"  
BY9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c3c4c(c5c6ccccc6n(c5c3[nH]2)[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O)C(=O)NC4=O"  
BY9  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)c3c4c(c5c6ccccc6n(c5c3[nH]2)C7C(C(C(C(O7)CO)O)O)O)C(=O)NC4=O"  
#
_pdbx_chem_comp_identifier.comp_id          BY9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  12.01
_pdbx_chem_comp_identifier.identifier       "12-beta-D-glucopyranosyl-12,13-dihydro-5H-indolo[2,3-a]pyrrolo[3,4-c]carbazole-5,7(6H)-dione"
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     BY9
_pdbx_chem_comp_synonyms.name        "rebeccamycin analogue"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
BY9  "Create component"  2019-11-04  RCSB  
BY9  "Modify synonyms"   2020-06-05  PDBE  
BY9  "Initial release"   2020-11-25  RCSB  
##
