data_G09
#

_chem_comp.id                                   G09
_chem_comp.name                                 "2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H31 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-07-14
_chem_comp.pdbx_modified_date                   2021-04-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       469.578
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    G09
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7CJT
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
G09  C13   C1   C  0  1  N  N  R  -42.659  10.123  -39.894   -0.342   1.484   0.132  C13   G09   1  
G09  C17   C2   C  0  1  N  N  N  -42.211  12.819  -40.667    2.217   1.941  -1.145  C17   G09   2  
G09  C20   C3   C  0  1  Y  N  N  -43.174   6.767  -38.032   -3.617   0.241  -1.274  C20   G09   3  
G09  C21   C4   C  0  1  Y  N  N  -43.452   7.212  -36.742   -4.435   0.289  -0.155  C21   G09   4  
G09  C22   C5   C  0  1  Y  N  N  -43.467   8.567  -36.491   -3.923   0.729   1.057  C22   G09   5  
G09  C26   C6   C  0  1  Y  N  N  -43.864   3.984  -34.780   -7.924  -0.479   0.656  C26   G09   6  
G09  C28   C7   C  0  1  Y  N  N  -45.153   2.734  -33.147  -10.165   0.008  -0.032  C28   G09   7  
G09  C02   C8   C  0  1  N  N  N  -46.049  15.900  -42.900    6.285  -1.483  -0.152  C02   G09   8  
G09  C03   C9   C  0  1  Y  N  N  -45.267  15.669  -44.147    6.782  -0.457   0.674  C03   G09   9  
G09  C05   C10  C  0  1  Y  N  N  -44.384  15.736  -46.154    7.921   0.953   1.968  C05   G09  10  
G09  C06   C11  C  0  1  Y  N  N  -43.786  14.694  -45.478    6.675   1.457   1.860  C06   G09  11  
G09  C07   C12  C  0  1  Y  N  N  -44.361  14.674  -44.219    5.923   0.584   1.043  C07   G09  12  
G09  C09   C13  C  0  1  N  N  N  -44.904  14.031  -41.844    4.202  -0.380  -0.167  C09   G09  13  
G09  C11   C14  C  0  1  N  N  R  -43.566  12.071  -40.858    2.025   0.763  -0.188  C11   G09  14  
G09  C12   C15  C  0  1  N  N  N  -43.713  11.103  -39.831    0.564   0.306  -0.234  C12   G09  15  
G09  C14   C16  C  0  1  N  N  N  -41.278  10.810  -39.648   -0.082   2.642  -0.835  C14   G09  16  
G09  C16   C17  C  0  1  N  N  N  -40.063  12.538  -40.296    1.583   4.240  -1.564  C16   G09  17  
G09  C18   C18  C  0  1  Y  N  N  -42.947   9.044  -38.786   -1.785   1.059   0.032  C18   G09  18  
G09  C19   C19  C  0  1  Y  N  N  -42.920   7.683  -39.054   -2.294   0.626  -1.178  C19   G09  19  
G09  C23   C20  C  0  1  Y  N  N  -43.230   9.473  -37.513   -2.601   1.118   1.147  C23   G09  20  
G09  C25   C21  C  0  1  N  N  N  -43.796   4.975  -35.990   -6.519  -0.018   0.947  C25   G09  21  
G09  C27   C22  C  0  1  Y  N  N  -45.091   3.648  -34.192   -8.878   0.431   0.241  C27   G09  22  
G09  C29   C23  C  0  1  Y  N  N  -43.990   2.133  -32.695  -10.498  -1.326   0.111  C29   G09  23  
G09  C30   C24  C  0  1  Y  N  N  -42.761   2.451  -33.264   -9.544  -2.237   0.525  C30   G09  24  
G09  C31   C25  C  0  1  Y  N  N  -42.706   3.364  -34.299   -8.257  -1.813   0.798  C31   G09  25  
G09  C33   C26  C  0  1  N  N  N  -46.642  15.331  -40.545    4.450  -2.471  -1.415  C33   G09  26  
G09  C34   C27  C  0  1  N  N  N  -47.419  14.071  -40.117    3.867  -3.566  -0.560  C34   G09  27  
G09  C35   C28  C  0  1  N  N  N  -47.790  13.846  -38.852    2.622  -3.938  -0.731  C35   G09  28  
G09  N04   N1   N  0  1  Y  N  N  -45.272  16.319  -45.327    8.006  -0.205   1.257  N04   G09  29  
G09  N08   N2   N  0  1  N  N  N  -44.150  13.819  -43.048    4.649   0.583   0.603  N08   G09  30  
G09  N10   N3   N  0  1  N  N  N  -44.622  13.135  -40.742    2.897  -0.343  -0.592  N10   G09  31  
G09  N15   N4   N  0  1  N  N  N  -41.079  11.914  -40.556    1.328   3.042  -0.753  N15   G09  32  
G09  N32   N5   N  0  1  N  N  N  -45.865  15.091  -41.760    4.997  -1.419  -0.555  N32   G09  33  
G09  O01   O1   O  0  1  N  N  N  -46.822  16.782  -42.921    7.002  -2.405  -0.501  O01   G09  34  
G09  O24   O2   O  0  1  N  N  N  -43.712   6.345  -35.671   -5.736  -0.094  -0.245  O24   G09  35  
G09  H131  H1   H  0  0  N  N  N  -42.645   9.630  -40.877   -0.127   1.806   1.151  H131  G09  36  
G09  H171  H2   H  0  0  N  N  N  -42.049  13.480  -41.531    3.253   2.278  -1.104  H171  G09  37  
G09  H172  H3   H  0  0  N  N  N  -42.269  13.423  -39.750    1.977   1.626  -2.161  H172  G09  38  
G09  H201  H4   H  0  0  N  N  N  -43.155   5.708  -38.243   -4.013  -0.102  -2.219  H201  G09  39  
G09  H221  H5   H  0  0  N  N  N  -43.665   8.925  -35.492   -4.558   0.768   1.930  H221  G09  40  
G09  H281  H6   H  0  0  N  N  N  -46.102   2.494  -32.690  -10.911   0.719  -0.356  H281  G09  41  
G09  H051  H7   H  0  0  N  N  N  -44.176  16.033  -47.171    8.727   1.398   2.531  H051  G09  42  
G09  H061  H8   H  0  0  N  N  N  -43.023  14.028  -45.854    6.316   2.366   2.318  H061  G09  43  
G09  H111  H9   H  0  0  N  N  N  -43.595  11.610  -41.856    2.278   1.073   0.826  H111  G09  44  
G09  H121  H10  H  0  0  N  N  N  -43.679  11.607  -38.854    0.414  -0.505   0.479  H121  G09  45  
G09  H122  H11  H  0  0  N  N  N  -44.683  10.597  -39.949    0.323  -0.041  -1.238  H122  G09  46  
G09  H142  H12  H  0  0  N  N  N  -40.477  10.071  -39.799   -0.311   2.323  -1.852  H142  G09  47  
G09  H141  H13  H  0  0  N  N  N  -41.242  11.184  -38.614   -0.716   3.487  -0.568  H141  G09  48  
G09  H162  H14  H  0  0  N  N  N  -39.215  11.842  -40.215    1.344   4.030  -2.607  H162  G09  49  
G09  H161  H15  H  0  0  N  N  N  -39.865  13.266  -41.097    0.962   5.061  -1.206  H161  G09  50  
G09  H163  H16  H  0  0  N  N  N  -40.193  13.070  -39.342    2.634   4.517  -1.482  H163  G09  51  
G09  H191  H17  H  0  0  N  N  N  -42.703   7.333  -40.052   -1.654   0.581  -2.047  H191  G09  52  
G09  H231  H18  H  0  0  N  N  N  -43.269  10.532  -37.305   -2.201   1.457   2.091  H231  G09  53  
G09  H251  H19  H  0  0  N  N  N  -44.702   4.827  -36.596   -6.541   1.013   1.303  H251  G09  54  
G09  H252  H20  H  0  0  N  N  N  -42.909   4.715  -36.587   -6.078  -0.657   1.713  H252  G09  55  
G09  H271  H21  H  0  0  N  N  N  -46.000   4.105  -34.555   -8.618   1.474   0.130  H271  G09  56  
G09  H291  H22  H  0  0  N  N  N  -44.038   1.411  -31.893  -11.504  -1.657  -0.102  H291  G09  57  
G09  H301  H23  H  0  0  N  N  N  -41.856   1.987  -32.899   -9.805  -3.279   0.636  H301  G09  58  
G09  H311  H24  H  0  0  N  N  N  -41.752   3.603  -34.745   -7.512  -2.524   1.122  H311  G09  59  
G09  H332  H25  H  0  0  N  N  N  -45.958  15.622  -39.734    5.245  -2.881  -2.038  H332  G09  60  
G09  H331  H26  H  0  0  N  N  N  -47.357  16.146  -40.732    3.670  -2.052  -2.051  H331  G09  61  
G09  H1    H27  H  0  1  N  N  N  -47.674  13.340  -40.869    4.475  -4.045   0.193  H1    G09  62  
G09  H2    H28  H  0  1  N  N  N  -48.334  12.947  -38.600    2.015  -3.460  -1.485  H2    G09  63  
G09  H351  H29  H  0  0  N  N  N  -47.546  14.563  -38.082    2.204  -4.723  -0.118  H351  G09  64  
G09  H041  H30  H  0  0  N  N  N  -45.844  17.108  -45.552    8.796  -0.761   1.174  H041  G09  65  
G09  H101  H31  H  0  0  N  N  N  -45.138  13.225  -39.890    2.552  -1.049  -1.161  H101  G09  66  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
G09  C05  C06   DOUB  Y  N   1  
G09  C05  N04   SING  Y  N   2  
G09  C06  C07   SING  Y  N   3  
G09  N04  C03   SING  Y  N   4  
G09  C07  C03   DOUB  Y  N   5  
G09  C07  N08   SING  N  N   6  
G09  C03  C02   SING  N  N   7  
G09  N08  C09   DOUB  N  N   8  
G09  O01  C02   DOUB  N  N   9  
G09  C02  N32   SING  N  N  10  
G09  C09  N32   SING  N  N  11  
G09  C09  N10   SING  N  N  12  
G09  N32  C33   SING  N  N  13  
G09  C11  N10   SING  N  N  14  
G09  C11  C17   SING  N  N  15  
G09  C11  C12   SING  N  N  16  
G09  C17  N15   SING  N  N  17  
G09  N15  C16   SING  N  N  18  
G09  N15  C14   SING  N  N  19  
G09  C33  C34   SING  N  N  20  
G09  C34  C35   DOUB  N  N  21  
G09  C13  C12   SING  N  N  22  
G09  C13  C14   SING  N  N  23  
G09  C13  C18   SING  N  N  24  
G09  C19  C18   DOUB  Y  N  25  
G09  C19  C20   SING  Y  N  26  
G09  C18  C23   SING  Y  N  27  
G09  C20  C21   DOUB  Y  N  28  
G09  C23  C22   DOUB  Y  N  29  
G09  C21  C22   SING  Y  N  30  
G09  C21  O24   SING  N  N  31  
G09  C25  O24   SING  N  N  32  
G09  C25  C26   SING  N  N  33  
G09  C26  C31   DOUB  Y  N  34  
G09  C26  C27   SING  Y  N  35  
G09  C31  C30   SING  Y  N  36  
G09  C27  C28   DOUB  Y  N  37  
G09  C30  C29   DOUB  Y  N  38  
G09  C28  C29   SING  Y  N  39  
G09  C13  H131  SING  N  N  40  
G09  C17  H171  SING  N  N  41  
G09  C17  H172  SING  N  N  42  
G09  C20  H201  SING  N  N  43  
G09  C22  H221  SING  N  N  44  
G09  C28  H281  SING  N  N  45  
G09  C05  H051  SING  N  N  46  
G09  C06  H061  SING  N  N  47  
G09  C11  H111  SING  N  N  48  
G09  C12  H121  SING  N  N  49  
G09  C12  H122  SING  N  N  50  
G09  C14  H142  SING  N  N  51  
G09  C14  H141  SING  N  N  52  
G09  C16  H162  SING  N  N  53  
G09  C16  H161  SING  N  N  54  
G09  C16  H163  SING  N  N  55  
G09  C19  H191  SING  N  N  56  
G09  C23  H231  SING  N  N  57  
G09  C25  H251  SING  N  N  58  
G09  C25  H252  SING  N  N  59  
G09  C27  H271  SING  N  N  60  
G09  C29  H291  SING  N  N  61  
G09  C30  H301  SING  N  N  62  
G09  C31  H311  SING  N  N  63  
G09  C33  H332  SING  N  N  64  
G09  C33  H331  SING  N  N  65  
G09  C34  H1    SING  N  N  66  
G09  C35  H2    SING  N  N  67  
G09  C35  H351  SING  N  N  68  
G09  N04  H041  SING  N  N  69  
G09  N10  H101  SING  N  N  70  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
G09  InChI             InChI                 1.03   "InChI=1S/C28H31N5O2/c1-3-15-33-27(34)26-25(13-14-29-26)31-28(33)30-23-16-22(17-32(2)18-23)21-9-11-24(12-10-21)35-19-20-7-5-4-6-8-20/h3-14,22-23,29H,1,15-19H2,2H3,(H,30,31)/t22-,23+/m0/s1"  
G09  InChIKey          InChI                 1.03   NBDJDKAXIGWAIM-XZOQPEGZSA-N  
G09  SMILES_CANONICAL  CACTVS                3.385  "CN1C[C@@H](C[C@@H](C1)c2ccc(OCc3ccccc3)cc2)NC4=Nc5cc[nH]c5C(=O)N4CC=C"  
G09  SMILES            CACTVS                3.385  "CN1C[CH](C[CH](C1)c2ccc(OCc3ccccc3)cc2)NC4=Nc5cc[nH]c5C(=O)N4CC=C"  
G09  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CN1C[C@H](C[C@H](C1)NC2=Nc3cc[nH]c3C(=O)N2CC=C)c4ccc(cc4)OCc5ccccc5"  
G09  SMILES            "OpenEye OEToolkits"  2.0.7  "CN1CC(CC(C1)NC2=Nc3cc[nH]c3C(=O)N2CC=C)c4ccc(cc4)OCc5ccccc5"  
#
_pdbx_chem_comp_identifier.comp_id          G09
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "2-[[(3~{R},5~{R})-1-methyl-5-(4-phenylmethoxyphenyl)piperidin-3-yl]amino]-3-prop-2-enyl-5~{H}-pyrrolo[3,2-d]pyrimidin-4-one"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
G09  "Create component"     2020-07-14  PDBJ  
G09  "Modify linking type"  2021-04-02  PDBJ  
G09  "Modify formula"       2021-04-02  PDBJ  
G09  "Modify name"          2021-04-02  PDBJ  
G09  "Initial release"      2021-04-14  RCSB  
##
