data_HD9
#

_chem_comp.id                                   HD9
_chem_comp.name                                 "(2R,3R,4S,5R)-2-(2-azanyl-6-methoxy-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H15 N5 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-18
_chem_comp.pdbx_modified_date                   2022-01-28
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       297.267
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    HD9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7DOY
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HD9  C01  C1   C  0  1  N  N  N  18.823  -38.128  2.402   5.709  -1.201  -0.368  C01  HD9   1  
HD9  C03  C2   C  0  1  Y  N  N  18.483  -35.791  2.646   3.414  -0.654  -0.106  C03  HD9   2  
HD9  C05  C3   C  0  1  Y  N  N  18.542  -33.470  2.660   2.891   1.504   0.536  C05  HD9   3  
HD9  C07  C4   C  0  1  Y  N  N  18.810  -34.583  4.701   1.131   0.057   0.208  C07  HD9   4  
HD9  C08  C5   C  0  1  Y  N  N  18.684  -35.817  4.067   2.044  -0.958  -0.126  C08  HD9   5  
HD9  C10  C6   C  0  1  Y  N  N  18.990  -36.101  6.249   0.053  -1.807  -0.273  C10  HD9   6  
HD9  C12  C7   C  0  1  N  N  R  19.165  -33.799  7.004  -1.394   0.162   0.359  C12  HD9   7  
HD9  C13  C8   C  0  1  N  N  R  20.343  -33.261  6.882  -1.902   0.869  -0.923  C13  HD9   8  
HD9  C14  C9   C  0  1  N  N  S  20.118  -31.871  7.505  -3.429   0.936  -0.673  C14  HD9   9  
HD9  C15  C10  C  0  1  N  N  R  18.746  -31.462  6.889  -3.687  -0.159   0.380  C15  HD9  10  
HD9  C17  C11  C  0  1  N  N  N  18.982  -30.738  5.502  -4.692  -1.177  -0.163  C17  HD9  11  
HD9  N04  N1   N  0  1  Y  N  N  18.417  -34.649  2.001   3.787   0.575   0.227  N04  HD9  12  
HD9  N06  N2   N  0  1  Y  N  N  18.734  -33.444  3.951   1.590   1.261   0.530  N06  HD9  13  
HD9  N09  N3   N  0  1  Y  N  N  18.795  -36.728  5.038   1.320  -2.069  -0.409  N09  HD9  14  
HD9  N11  N4   N  0  1  Y  N  N  18.995  -34.802  6.032  -0.116  -0.508   0.107  N11  HD9  15  
HD9  N21  N5   N  0  1  N  N  N  18.470  -32.217  1.897   3.332   2.772   0.878  N21  HD9  16  
HD9  O02  O1   O  0  1  N  N  N  18.327  -36.946  1.839   4.337  -1.596  -0.414  O02  HD9  17  
HD9  O16  O2   O  0  1  N  N  N  18.103  -32.576  6.722  -2.429  -0.803   0.645  O16  HD9  18  
HD9  O18  O3   O  0  1  N  N  N  17.828  -29.948  5.183  -5.014  -2.122   0.859  O18  HD9  19  
HD9  O19  O4   O  0  1  N  N  N  20.011  -31.976  8.811  -3.796   2.219  -0.161  O19  HD9  20  
HD9  O20  O5   O  0  1  N  N  N  21.356  -34.043  7.667  -1.346   2.181  -1.036  O20  HD9  21  
HD9  H1   H1   H  0  1  N  N  N  18.657  -38.964  1.706   5.957  -0.867   0.640  H1   HD9  22  
HD9  H2   H2   H  0  1  N  N  N  19.901  -38.019  2.594   6.340  -2.048  -0.635  H2   HD9  23  
HD9  H3   H3   H  0  1  N  N  N  18.301  -38.330  3.349   5.876  -0.386  -1.072  H3   HD9  24  
HD9  H4   H4   H  0  1  N  N  N  19.116  -36.587  7.205  -0.747  -2.514  -0.437  H4   HD9  25  
HD9  H5   H5   H  0  1  N  N  N  18.974  -34.189  8.015  -1.297   0.875   1.178  H5   HD9  26  
HD9  H6   H6   H  0  1  N  N  N  20.671  -33.152  5.838  -1.679   0.275  -1.809  H6   HD9  27  
HD9  H7   H7   H  0  1  N  N  N  20.902  -31.174  7.175  -3.976   0.722  -1.591  H7   HD9  28  
HD9  H8   H8   H  0  1  N  N  N  18.237  -30.766  7.572  -4.073   0.290   1.295  H8   HD9  29  
HD9  H9   H9   H  0  1  N  N  N  19.142  -31.491  4.716  -5.598  -0.660  -0.479  H9   HD9  30  
HD9  H10  H10  H  0  1  N  N  N  19.866  -30.087  5.572  -4.255  -1.698  -1.015  H10  HD9  31  
HD9  H11  H11  H  0  1  N  N  N  18.329  -32.423  0.929   2.692   3.464   1.107  H11  HD9  32  
HD9  H12  H12  H  0  1  N  N  N  17.708  -31.665  2.235   4.282   2.968   0.888  H12  HD9  33  
HD9  H13  H13  H  0  1  N  N  N  17.963  -29.510  4.351  -5.647  -2.799   0.584  H13  HD9  34  
HD9  H14  H14  H  0  1  N  N  N  19.872  -31.115  9.188  -4.742   2.316   0.014  H14  HD9  35  
HD9  H15  H15  H  0  1  N  N  N  22.211  -33.641  7.570  -1.635   2.664  -1.823  H15  HD9  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HD9  O02  C01  SING  N  N   1  
HD9  O02  C03  SING  N  N   2  
HD9  N21  C05  SING  N  N   3  
HD9  N04  C03  DOUB  Y  N   4  
HD9  N04  C05  SING  Y  N   5  
HD9  C03  C08  SING  Y  N   6  
HD9  C05  N06  DOUB  Y  N   7  
HD9  N06  C07  SING  Y  N   8  
HD9  C08  C07  DOUB  Y  N   9  
HD9  C08  N09  SING  Y  N  10  
HD9  C07  N11  SING  Y  N  11  
HD9  N09  C10  DOUB  Y  N  12  
HD9  O18  C17  SING  N  N  13  
HD9  C17  C15  SING  N  N  14  
HD9  N11  C10  SING  Y  N  15  
HD9  N11  C12  SING  N  N  16  
HD9  O16  C15  SING  N  N  17  
HD9  O16  C12  SING  N  N  18  
HD9  C13  C12  SING  N  N  19  
HD9  C13  C14  SING  N  N  20  
HD9  C13  O20  SING  N  N  21  
HD9  C15  C14  SING  N  N  22  
HD9  C14  O19  SING  N  N  23  
HD9  C01  H1   SING  N  N  24  
HD9  C01  H2   SING  N  N  25  
HD9  C01  H3   SING  N  N  26  
HD9  C10  H4   SING  N  N  27  
HD9  C12  H5   SING  N  N  28  
HD9  C13  H6   SING  N  N  29  
HD9  C14  H7   SING  N  N  30  
HD9  C15  H8   SING  N  N  31  
HD9  C17  H9   SING  N  N  32  
HD9  C17  H10  SING  N  N  33  
HD9  N21  H11  SING  N  N  34  
HD9  N21  H12  SING  N  N  35  
HD9  O18  H13  SING  N  N  36  
HD9  O19  H14  SING  N  N  37  
HD9  O20  H15  SING  N  N  38  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HD9  InChI             InChI                 1.03   "InChI=1S/C11H15N5O5/c1-20-9-5-8(14-11(12)15-9)16(3-13-5)10-7(19)6(18)4(2-17)21-10/h3-4,6-7,10,17-19H,2H2,1H3,(H2,12,14,15)/t4-,6-,7-,10-/m1/s1"  
HD9  InChIKey          InChI                 1.03   IXOXBSCIXZEQEQ-KQYNXXCUSA-N  
HD9  SMILES_CANONICAL  CACTVS                3.385  "COc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O"  
HD9  SMILES            CACTVS                3.385  "COc1nc(N)nc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O"  
HD9  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "COc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O"  
HD9  SMILES            "OpenEye OEToolkits"  2.0.7  "COc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)CO)O)O"  
#
_pdbx_chem_comp_identifier.comp_id          HD9
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{S},5~{R})-2-(2-azanyl-6-methoxy-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HD9  "Create component"  2020-12-18  PDBJ  
HD9  "Initial release"   2022-02-02  RCSB  
##
