data_JR9
#

_chem_comp.id                                   JR9
_chem_comp.name                                 "N~3~-benzyl-2-[(6-bromo-1,3-benzodioxol-5-yl)methyl]imidazo[1,2-a]pyrazine-3,8-diamine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H18 Br N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-08-26
_chem_comp.pdbx_modified_date                   2020-06-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       452.304
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JR9
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4R3M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JR9  N01  N01  N   0  1  Y  N  N  -34.999  -10.508  -26.389   0.955   4.567  -1.674  N01  JR9   1  
JR9  C02  C02  C   0  1  Y  N  N  -34.202   -9.830  -27.271   2.130   3.924  -1.703  C02  JR9   2  
JR9  C03  C03  C   0  1  Y  N  N  -32.871   -9.569  -26.985   2.304   2.752  -1.066  C03  JR9   3  
JR9  N04  N04  N   0  1  Y  N  N  -32.381  -10.037  -25.783   1.261   2.191  -0.366  N04  JR9   4  
JR9  C05  C05  C   0  1  Y  N  N  -33.110  -10.713  -24.917   0.049   2.845  -0.331  C05  JR9   5  
JR9  C06  C06  C   0  1  Y  N  N  -34.486  -10.945  -25.228  -0.079   4.077  -1.020  C06  JR9   6  
JR9  C07  C07  C   0  1  Y  N  N  -31.122   -9.900  -25.297   1.122   1.050   0.362  C07  JR9   7  
JR9  C08  C08  C   0  1  Y  N  N  -31.074  -10.543  -24.064  -0.158   1.027   0.825  C08  JR9   8  
JR9  N09  N09  N   0  1  Y  N  N  -32.324  -11.063  -23.834  -0.786   2.122   0.393  N09  JR9   9  
JR9  N10  N10  N   0  1  N  N  N  -35.316  -11.621  -24.341  -1.283   4.762  -1.005  N10  JR9  10  
JR9  N11  N11  N   0  1  N  N  N  -30.132   -9.176  -26.047   2.106   0.086   0.591  N11  JR9  11  
JR9  C12  C12  C   0  1  N  N  N  -28.729   -9.307  -25.876   3.366   0.452  -0.069  C12  JR9  12  
JR9  C13  C13  C   0  1  Y  N  N  -27.877   -8.490  -26.833   4.401  -0.610   0.200  C13  JR9  13  
JR9  C14  C14  C   0  1  Y  N  N  -27.078   -7.450  -26.360   4.531  -1.683  -0.661  C14  JR9  14  
JR9  C15  C15  C   0  1  Y  N  N  -26.287   -6.744  -27.254   5.480  -2.657  -0.414  C15  JR9  15  
JR9  C16  C16  C   0  1  Y  N  N  -26.319   -7.060  -28.605   6.300  -2.558   0.694  C16  JR9  16  
JR9  C17  C17  C   0  1  Y  N  N  -27.122   -8.088  -29.085   6.170  -1.485   1.556  C17  JR9  17  
JR9  C18  C18  C   0  1  Y  N  N  -27.905   -8.811  -28.184   5.225  -0.507   1.306  C18  JR9  18  
JR9  C19  C19  C   0  1  N  N  N  -29.859  -10.627  -23.206  -0.765  -0.055   1.682  C19  JR9  19  
JR9  C20  C20  C   0  1  Y  N  N  -28.991  -11.817  -23.598  -1.488  -1.044   0.804  C20  JR9  20  
JR9  C21  C21  C   0  1  Y  N  N  -27.625  -11.810  -23.386  -2.799  -0.807   0.432  C21  JR9  21  
JR9  C22  C22  C   0  1  Y  N  N  -26.783  -12.868  -23.699  -3.467  -1.712  -0.373  C22  JR9  22  
JR9  C23  C23  C   0  1  Y  N  N  -27.361  -14.045  -24.276  -2.823  -2.859  -0.808  C23  JR9  23  
JR9  C24  C24  C   0  1  Y  N  N  -28.705  -14.073  -24.498  -1.503  -3.097  -0.433  C24  JR9  24  
JR9  C25  C25  C   0  1  Y  N  N  -29.553  -12.956  -24.155  -0.839  -2.183   0.368  C25  JR9  25  
JR9  O26  O26  O   0  1  N  N  N  -26.780  -15.240  -24.693  -3.247  -3.891  -1.593  O26  JR9  26  
JR9  C27  C27  C   0  1  N  N  N  -27.858  -16.049  -25.105  -2.049  -4.559  -2.031  C27  JR9  27  
JR9  O28  O28  O   0  1  N  N  N  -29.039  -15.287  -25.090  -1.100  -4.279  -0.984  O28  JR9  28  
JR9  BR   BR   BR  0  0  N  N  N  -26.754  -10.274  -22.608  -3.681   0.758   1.026  BR   JR9  29  
JR9  H1   H1   H   0  1  N  N  N  -34.618   -9.492  -28.208   2.955   4.357  -2.249  H1   JR9  30  
JR9  H2   H2   H   0  1  N  N  N  -32.244   -9.022  -27.674   3.261   2.252  -1.104  H2   JR9  31  
JR9  H3   H3   H   0  1  N  N  N  -36.236  -11.685  -24.728  -1.367   5.605  -1.478  H3   JR9  32  
JR9  H4   H4   H   0  1  N  N  N  -34.956  -12.540  -24.183  -2.042   4.398  -0.523  H4   JR9  33  
JR9  H5   H5   H   0  1  N  N  N  -28.468  -10.367  -26.010   3.203   0.536  -1.143  H5   JR9  34  
JR9  H6   H6   H   0  1  N  N  N  -27.075   -7.197  -25.310   3.890  -1.760  -1.527  H6   JR9  35  
JR9  H7   H7   H   0  1  N  N  N  -25.647   -5.950  -26.899   5.581  -3.496  -1.087  H7   JR9  36  
JR9  H8   H8   H   0  1  N  N  N  -25.709   -6.497  -29.296   7.041  -3.319   0.887  H8   JR9  37  
JR9  H9   H9   H   0  1  N  N  N  -27.140   -8.324  -30.139   6.811  -1.407   2.422  H9   JR9  38  
JR9  H10  H10  H   0  1  N  N  N  -28.531   -9.618  -28.536   5.124   0.331   1.979  H10  JR9  39  
JR9  H11  H11  H   0  1  N  N  N  -29.274   -9.703  -23.320   0.024  -0.567   2.233  H11  JR9  40  
JR9  H12  H12  H   0  1  N  N  N  -30.168  -10.738  -22.156  -1.469   0.391   2.384  H12  JR9  41  
JR9  H13  H13  H   0  1  N  N  N  -25.721  -12.806  -23.513  -4.491  -1.524  -0.662  H13  JR9  42  
JR9  H14  H14  H   0  1  N  N  N  -30.617  -13.007  -24.331   0.185  -2.366   0.660  H14  JR9  43  
JR9  H15  H15  H   0  1  N  N  N  -27.962  -16.902  -24.418  -2.218  -5.632  -2.117  H15  JR9  44  
JR9  H16  H16  H   0  1  N  N  N  -27.672  -16.419  -26.124  -1.705  -4.147  -2.979  H16  JR9  45  
JR9  H17  H17  H   0  1  N  N  N  -30.331   -8.209  -25.889   1.794  -0.827   0.294  H17  JR9  46  
JR9  H18  H18  H   0  1  N  N  N  -28.481   -8.995  -24.851   3.716   1.408   0.321  H18  JR9  47  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JR9  C17  C16  DOUB  Y  N   1  
JR9  C17  C18  SING  Y  N   2  
JR9  C16  C15  SING  Y  N   3  
JR9  C18  C13  DOUB  Y  N   4  
JR9  C02  C03  DOUB  Y  N   5  
JR9  C02  N01  SING  Y  N   6  
JR9  C15  C14  DOUB  Y  N   7  
JR9  C03  N04  SING  Y  N   8  
JR9  C13  C14  SING  Y  N   9  
JR9  C13  C12  SING  N  N  10  
JR9  N01  C06  DOUB  Y  N  11  
JR9  N11  C12  SING  N  N  12  
JR9  N11  C07  SING  N  N  13  
JR9  N04  C07  SING  Y  N  14  
JR9  N04  C05  SING  Y  N  15  
JR9  C07  C08  DOUB  Y  N  16  
JR9  C06  C05  SING  Y  N  17  
JR9  C06  N10  SING  N  N  18  
JR9  C27  O28  SING  N  N  19  
JR9  C27  O26  SING  N  N  20  
JR9  O28  C24  SING  N  N  21  
JR9  C05  N09  DOUB  Y  N  22  
JR9  O26  C23  SING  N  N  23  
JR9  C24  C23  DOUB  Y  N  24  
JR9  C24  C25  SING  Y  N  25  
JR9  C23  C22  SING  Y  N  26  
JR9  C25  C20  DOUB  Y  N  27  
JR9  C08  N09  SING  Y  N  28  
JR9  C08  C19  SING  N  N  29  
JR9  C22  C21  DOUB  Y  N  30  
JR9  C20  C21  SING  Y  N  31  
JR9  C20  C19  SING  N  N  32  
JR9  C21  BR   SING  N  N  33  
JR9  C02  H1   SING  N  N  34  
JR9  C03  H2   SING  N  N  35  
JR9  N10  H3   SING  N  N  36  
JR9  N10  H4   SING  N  N  37  
JR9  C12  H5   SING  N  N  38  
JR9  C14  H6   SING  N  N  39  
JR9  C15  H7   SING  N  N  40  
JR9  C16  H8   SING  N  N  41  
JR9  C17  H9   SING  N  N  42  
JR9  C18  H10  SING  N  N  43  
JR9  C19  H11  SING  N  N  44  
JR9  C19  H12  SING  N  N  45  
JR9  C22  H13  SING  N  N  46  
JR9  C25  H14  SING  N  N  47  
JR9  C27  H15  SING  N  N  48  
JR9  C27  H16  SING  N  N  49  
JR9  N11  H17  SING  N  N  50  
JR9  C12  H18  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JR9  SMILES            ACDLabs               12.01  "Brc1c(cc2OCOc2c1)Cc4nc5c(nccn5c4NCc3ccccc3)N"  
JR9  InChI             InChI                 1.03   "InChI=1S/C21H18BrN5O2/c22-15-10-18-17(28-12-29-18)9-14(15)8-16-20(25-11-13-4-2-1-3-5-13)27-7-6-24-19(23)21(27)26-16/h1-7,9-10,25H,8,11-12H2,(H2,23,24)"  
JR9  InChIKey          InChI                 1.03   QOEANVPMVDTINQ-UHFFFAOYSA-N  
JR9  SMILES_CANONICAL  CACTVS                3.385  "Nc1nccn2c(NCc3ccccc3)c(Cc4cc5OCOc5cc4Br)nc12"  
JR9  SMILES            CACTVS                3.385  "Nc1nccn2c(NCc3ccccc3)c(Cc4cc5OCOc5cc4Br)nc12"  
JR9  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1ccc(cc1)CNc2c(nc3n2ccnc3N)Cc4cc5c(cc4Br)OCO5"  
JR9  SMILES            "OpenEye OEToolkits"  1.7.6  "c1ccc(cc1)CNc2c(nc3n2ccnc3N)Cc4cc5c(cc4Br)OCO5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
JR9  "SYSTEMATIC NAME"  ACDLabs               12.01  "N~3~-benzyl-2-[(6-bromo-1,3-benzodioxol-5-yl)methyl]imidazo[1,2-a]pyrazine-3,8-diamine"  
JR9  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[(6-bromanyl-1,3-benzodioxol-5-yl)methyl]-N3-(phenylmethyl)imidazo[1,2-a]pyrazine-3,8-diamine"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JR9  "Create component"    2014-08-26  PDBJ  
JR9  "Initial release"     2014-11-05  RCSB  
JR9  "Other modification"  2020-06-27  RCSB  
##
