data_NE9
# 
_chem_comp.id                                    NE9 
_chem_comp.name                                  "2-chloranyl-N-[7-[4-[(4-chlorophenyl)amino]oxan-4-yl]carbonyl-7-azaspiro[3.5]nonan-2-yl]ethanamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H29 Cl2 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-17 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        454.390 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     NE9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8AQE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
NE9 C1  C1  C  0 1 N N N N N N 21.041 -26.159 -3.472 5.496  -0.338 0.110  C1  NE9 1  
NE9 C5  C2  C  0 1 N N N N N N 23.214 -22.924 -1.968 1.633  -0.448 1.060  C5  NE9 2  
NE9 C4  C3  C  0 1 N N N N N N 22.024 -23.842 -1.592 2.773  0.374  1.676  C4  NE9 3  
NE9 C3  C4  C  0 1 N N N N N N 21.554 -23.755 -3.049 3.633  -0.898 1.578  C3  NE9 4  
NE9 C2  C5  C  0 1 N N N N N N 20.162 -27.078 -4.298 6.232  -0.462 -1.199 C2  NE9 5  
NE9 C6  C6  C  0 1 N N N N N N 24.556 -23.314 -1.335 1.608  -0.405 -0.467 C6  NE9 6  
NE9 C7  C7  C  0 1 N N N N N N 25.637 -22.289 -1.578 1.107  0.971  -0.921 C7  NE9 7  
NE9 C8  C8  C  0 1 N N N N N N 26.021 -20.171 -0.342 -1.266 1.560  -0.964 C8  NE9 8  
NE9 O1  O1  O  0 1 N N N N N N 21.851 -26.597 -2.666 5.930  0.383  0.984  O1  NE9 9  
NE9 O3  O2  O  0 1 N N N N N N 27.564 -16.777 0.507  -4.779 3.664  0.039  O3  NE9 10 
NE9 N1  N1  N  0 1 N N N N N N 20.861 -24.847 -3.692 4.352  -1.023 0.308  N1  NE9 11 
NE9 N2  N2  N  0 1 N N N N N N 25.187 -20.972 -1.114 -0.166 1.258  -0.247 N2  NE9 12 
NE9 O2  O3  O  0 1 N N N N N N 27.164 -20.545 -0.103 -1.224 1.545  -2.176 O2  NE9 13 
NE9 C9  C9  C  0 1 N N N N N N 25.524 -18.855 0.296  -2.550 1.916  -0.259 C9  NE9 14 
NE9 N3  N3  N  0 1 N N N N N N 24.103 -18.944 0.686  -2.834 0.919  0.776  N3  NE9 15 
NE9 C10 C10 C  0 1 Y N N N N N 23.508 -19.950 1.461  -3.008 -0.423 0.426  C10 NE9 16 
NE9 C11 C11 C  0 1 Y N N N N N 24.179 -21.106 1.901  -2.764 -0.839 -0.877 C11 NE9 17 
NE9 C12 C12 C  0 1 Y N N N N N 23.520 -22.053 2.660  -2.937 -2.165 -1.220 C12 NE9 18 
NE9 C13 C13 C  0 1 Y N N N N N 22.187 -21.873 2.966  -3.353 -3.079 -0.268 C13 NE9 19 
NE9 CL2 CL1 CL 0 0 N N N N N N 21.359 -23.064 3.920  -3.569 -4.746 -0.703 CL2 NE9 20 
NE9 C14 C14 C  0 1 Y N N N N N 21.497 -20.758 2.547  -3.597 -2.667 1.030  C14 NE9 21 
NE9 C15 C15 C  0 1 Y N N N N N 22.152 -19.797 1.801  -3.420 -1.343 1.381  C15 NE9 22 
NE9 C16 C16 C  0 1 N N N N N N 26.335 -18.563 1.582  -2.415 3.299  0.384  C16 NE9 23 
NE9 C17 C17 C  0 1 N N N N N N 27.678 -17.916 1.348  -3.749 3.686  1.029  C17 NE9 24 
NE9 C18 C18 C  0 1 N N N N N N 27.100 -17.158 -0.777 -4.983 2.385  -0.563 C18 NE9 25 
NE9 C19 C19 C  0 1 N N N N N N 25.692 -17.690 -0.710 -3.699 1.946  -1.272 C19 NE9 26 
NE9 C20 C20 C  0 1 N N N N N N 24.051 -20.501 -1.917 -0.222 1.210  1.220  C20 NE9 27 
NE9 C21 C21 C  0 1 N N N N N N 22.880 -21.440 -1.746 0.270  -0.164 1.688  C21 NE9 28 
NE9 C22 C22 C  0 1 N N N N N N 23.006 -23.433 -3.416 2.320  -1.698 1.626  C22 NE9 29 
NE9 H1  H1  H  0 1 N N N N N N 21.326 -23.407 -0.862 3.120  1.186  1.038  H1  NE9 30 
NE9 H2  H2  H  0 1 N N N N N N 22.313 -24.852 -1.266 2.578  0.693  2.700  H2  NE9 31 
NE9 H3  H3  H  0 1 N N N N N N 20.962 -22.835 -3.161 4.274  -1.059 2.445  H3  NE9 32 
NE9 H4  H4  H  0 1 N N N N N N 19.546 -27.697 -3.629 6.522  -1.501 -1.356 H4  NE9 33 
NE9 H5  H5  H  0 1 N N N N N N 19.508 -26.477 -4.946 5.583  -0.139 -2.013 H5  NE9 34 
NE9 CL1 CL2 CL 0 0 N Y N N N N 20.781 -27.709 -4.901 7.707  0.574  -1.159 CL1 NE9 35 
NE9 H7  H7  H  0 1 N N N N N N 24.414 -23.424 -0.250 2.613  -0.573 -0.853 H7  NE9 36 
NE9 H8  H8  H  0 1 N N N N N N 24.880 -24.275 -1.762 0.939  -1.179 -0.842 H8  NE9 37 
NE9 H9  H9  H  0 1 N N N N N N 26.545 -22.579 -1.029 1.841  1.733  -0.656 H9  NE9 38 
NE9 H10 H10 H  0 1 N N N N N N 25.859 -22.241 -2.654 0.956  0.967  -2.001 H10 NE9 39 
NE9 H11 H11 H  0 1 N N N N N N 20.173 -24.599 -4.374 4.005  -1.599 -0.391 H11 NE9 40 
NE9 H12 H12 H  0 1 N N N N N N 23.916 -18.094 1.178  -2.901 1.190  1.705  H12 NE9 41 
NE9 H13 H13 H  0 1 N N N N N N 25.217 -21.254 1.643  -2.440 -0.126 -1.620 H13 NE9 42 
NE9 H14 H14 H  0 1 N N N N N N 24.045 -22.929 3.012  -2.747 -2.490 -2.233 H14 NE9 43 
NE9 H15 H15 H  0 1 N N N N N N 20.454 -20.636 2.799  -3.922 -3.383 1.771  H15 NE9 44 
NE9 H16 H16 H  0 1 N N N N N N 21.616 -18.918 1.475  -3.607 -1.023 2.395  H16 NE9 45 
NE9 H17 H17 H  0 1 N N N N N N 25.738 -17.893 2.219  -1.636 3.272  1.146  H17 NE9 46 
NE9 H18 H18 H  0 1 N N N N N N 26.501 -19.516 2.106  -2.153 4.032  -0.379 H18 NE9 47 
NE9 H19 H19 H  0 1 N N N N N N 28.349 -18.646 0.873  -3.671 4.688  1.452  H19 NE9 48 
NE9 H20 H20 H  0 1 N N N N N N 28.100 -17.606 2.316  -3.989 2.975  1.820  H20 NE9 49 
NE9 H21 H21 H  0 1 N N N N N N 27.760 -17.940 -1.180 -5.240 1.657  0.207  H21 NE9 50 
NE9 H22 H22 H  0 1 N N N N N N 27.121 -16.281 -1.441 -5.794 2.449  -1.288 H22 NE9 51 
NE9 H23 H23 H  0 1 N N N N N N 25.023 -16.870 -0.409 -3.464 2.651  -2.069 H23 NE9 52 
NE9 H24 H24 H  0 1 N N N N N N 25.406 -18.048 -1.710 -3.838 0.951  -1.695 H24 NE9 53 
NE9 H25 H25 H  0 1 N N N N N N 24.342 -20.469 -2.977 0.418  1.989  1.636  H25 NE9 54 
NE9 H26 H26 H  0 1 N N N N N N 23.762 -19.493 -1.585 -1.249 1.363  1.551  H26 NE9 55 
NE9 H27 H27 H  0 1 N N N N N N 22.101 -21.152 -2.467 -0.441 -0.930 1.379  H27 NE9 56 
NE9 H28 H28 H  0 1 N N N N N N 22.494 -21.324 -0.723 0.361  -0.168 2.775  H28 NE9 57 
NE9 H29 H29 H  0 1 N N N N N N 23.614 -24.311 -3.682 2.000  -1.952 2.636  H29 NE9 58 
NE9 H30 H30 H  0 1 N N N N N N 23.119 -22.660 -4.191 2.302  -2.551 0.947  H30 NE9 59 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
NE9 C2  C1  SING N N 1  
NE9 N1  C1  SING N N 2  
NE9 N1  C3  SING N N 3  
NE9 C1  O1  DOUB N N 4  
NE9 C22 C3  SING N N 5  
NE9 C22 C5  SING N N 6  
NE9 C3  C4  SING N N 7  
NE9 C5  C21 SING N N 8  
NE9 C5  C4  SING N N 9  
NE9 C5  C6  SING N N 10 
NE9 C20 C21 SING N N 11 
NE9 C20 N2  SING N N 12 
NE9 C7  C6  SING N N 13 
NE9 C7  N2  SING N N 14 
NE9 N2  C8  SING N N 15 
NE9 C18 C19 SING N N 16 
NE9 C18 O3  SING N N 17 
NE9 C19 C9  SING N N 18 
NE9 C8  O2  DOUB N N 19 
NE9 C8  C9  SING N N 20 
NE9 C9  N3  SING N N 21 
NE9 C9  C16 SING N N 22 
NE9 O3  C17 SING N N 23 
NE9 N3  C10 SING N N 24 
NE9 C17 C16 SING N N 25 
NE9 C10 C15 DOUB Y N 26 
NE9 C10 C11 SING Y N 27 
NE9 C15 C14 SING Y N 28 
NE9 C11 C12 DOUB Y N 29 
NE9 C14 C13 DOUB Y N 30 
NE9 C12 C13 SING Y N 31 
NE9 C13 CL2 SING N N 32 
NE9 C4  H1  SING N N 33 
NE9 C4  H2  SING N N 34 
NE9 C3  H3  SING N N 35 
NE9 C2  H4  SING N N 36 
NE9 C2  H5  SING N N 37 
NE9 C2  CL1 SING N N 38 
NE9 C6  H7  SING N N 39 
NE9 C6  H8  SING N N 40 
NE9 C7  H9  SING N N 41 
NE9 C7  H10 SING N N 42 
NE9 N1  H11 SING N N 43 
NE9 N3  H12 SING N N 44 
NE9 C11 H13 SING N N 45 
NE9 C12 H14 SING N N 46 
NE9 C14 H15 SING N N 47 
NE9 C15 H16 SING N N 48 
NE9 C16 H17 SING N N 49 
NE9 C16 H18 SING N N 50 
NE9 C17 H19 SING N N 51 
NE9 C17 H20 SING N N 52 
NE9 C18 H21 SING N N 53 
NE9 C18 H22 SING N N 54 
NE9 C19 H23 SING N N 55 
NE9 C19 H24 SING N N 56 
NE9 C20 H25 SING N N 57 
NE9 C20 H26 SING N N 58 
NE9 C21 H27 SING N N 59 
NE9 C21 H28 SING N N 60 
NE9 C22 H29 SING N N 61 
NE9 C22 H30 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
NE9 InChI            InChI                1.06  "InChI=1S/C22H29Cl2N3O3/c23-15-19(28)25-18-13-21(14-18)5-9-27(10-6-21)20(29)22(7-11-30-12-8-22)26-17-3-1-16(24)2-4-17/h1-4,18,26H,5-15H2,(H,25,28)" 
NE9 InChIKey         InChI                1.06  BCCVMEZMRYSIML-UHFFFAOYSA-N                                                                                                                         
NE9 SMILES_CANONICAL CACTVS               3.385 "ClCC(=O)NC1CC2(CCN(CC2)C(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C1"                                                                                            
NE9 SMILES           CACTVS               3.385 "ClCC(=O)NC1CC2(CCN(CC2)C(=O)C3(CCOCC3)Nc4ccc(Cl)cc4)C1"                                                                                            
NE9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCOCC2)C(=O)N3CCC4(CC3)CC(C4)NC(=O)CCl)Cl"                                                                                            
NE9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1NC2(CCOCC2)C(=O)N3CCC4(CC3)CC(C4)NC(=O)CCl)Cl"                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           NE9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "2-chloranyl-~{N}-[7-[4-[(4-chlorophenyl)amino]oxan-4-yl]carbonyl-7-azaspiro[3.5]nonan-2-yl]ethanamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
NE9 "Create component"  2022-08-17 PDBE 
NE9 "Initial release"   2023-09-20 RCSB 
NE9 "Modify descriptor" 2023-09-23 RCSB 
NE9 "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            NE9 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C2 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
