data_RB9
# 
_chem_comp.id                                    RB9 
_chem_comp.name                                  "N-benzyl-2-({N-[2-(1H-indol-3-yl)ethyl]glycyl}amino)-4-phenylthiophene-3-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H28 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-12-16 
_chem_comp.pdbx_modified_date                    2011-12-02 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        508.634 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     RB9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3PSY 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
RB9 C1   C1   C 0 1 Y N N 0.177  8.320  8.696  2.735   1.227  0.191  C1   RB9 1  
RB9 N1   N1   N 0 1 N N N -1.082 6.527  7.753  3.394   -1.099 0.488  N1   RB9 2  
RB9 O1   O1   O 0 1 N N N -1.839 7.624  9.649  3.007   0.191  2.255  O1   RB9 3  
RB9 S1   S1   S 0 1 Y N N 2.616  9.098  8.781  1.472   2.913  -1.227 S1   RB9 4  
RB9 C2   C2   C 0 1 N N N -1.014 7.462  8.748  3.052   0.080  1.044  C2   RB9 5  
RB9 N2   N2   N 0 1 N N N 1.849  6.497  8.738  0.352   0.744  0.015  N2   RB9 6  
RB9 O2   O2   O 0 1 N N N 0.776  5.995  10.716 -0.943  2.090  -1.183 O2   RB9 7  
RB9 C3   C3   C 0 1 N N N -2.306 5.722  7.636  3.711   -2.247 1.341  C3   RB9 8  
RB9 N3   N3   N 0 1 N N N 1.085  3.440  10.605 -3.240  0.870  -0.836 N3   RB9 9  
RB9 C4   C4   C 0 1 Y N N -3.405 6.600  7.049  4.058   -3.434 0.479  C4   RB9 10 
RB9 N4   N4   N 0 1 Y N N -4.771 2.496  10.791 -8.547  -1.532 -1.165 N4   RB9 11 
RB9 C5   C5   C 0 1 Y N N 0.109  9.759  8.727  3.726   2.189  -0.264 C5   RB9 12 
RB9 C6   C6   C 0 1 Y N N -1.089 10.597 8.661  5.165   2.112  0.085  C6   RB9 13 
RB9 C7   C7   C 0 1 Y N N 1.386  10.304 8.740  3.200   3.150  -1.033 C7   RB9 14 
RB9 C8   C8   C 0 1 Y N N 1.464  7.841  8.721  1.476   1.505  -0.267 C8   RB9 15 
RB9 C9   C9   C 0 1 N N N 1.514  5.645  9.776  -0.847  1.102  -0.486 C9   RB9 16 
RB9 C10  C10  C 0 1 N N N 1.774  4.172  9.515  -2.069  0.275  -0.179 C10  RB9 17 
RB9 C11  C11  C 0 1 N N N -0.292 3.093  10.186 -4.453  0.088  -0.558 C11  RB9 18 
RB9 C12  C12  C 0 1 N N N -1.105 2.383  11.237 -5.649  0.737  -1.257 C12  RB9 19 
RB9 C13  C13  C 0 1 Y N N -2.551 2.197  10.889 -6.893  -0.065 -0.973 C13  RB9 20 
RB9 C14  C14  C 0 1 Y N N -2.158 10.360 7.779  6.133   2.203  -0.914 C14  RB9 21 
RB9 C15  C15  C 0 1 Y N N -3.330 11.153 7.698  7.470   2.132  -0.583 C15  RB9 22 
RB9 C16  C16  C 0 1 Y N N -3.376 12.278 8.526  7.852   1.970  0.737  C16  RB9 23 
RB9 C17  C17  C 0 1 Y N N -2.316 12.592 9.373  6.895   1.879  1.732  C17  RB9 24 
RB9 C18  C18  C 0 1 Y N N -1.184 11.781 9.443  5.555   1.955  1.414  C18  RB9 25 
RB9 C19  C19  C 0 1 Y N N -3.245 7.212  5.797  5.369   -3.650 0.097  C19  RB9 26 
RB9 C20  C20  C 0 1 Y N N -4.255 7.971  5.206  5.688   -4.738 -0.694 C20  RB9 27 
RB9 C21  C21  C 0 1 Y N N -5.430 8.160  5.913  4.695   -5.610 -1.102 C21  RB9 28 
RB9 C22  C22  C 0 1 Y N N -5.571 7.612  7.197  3.385   -5.394 -0.719 C22  RB9 29 
RB9 C23  C23  C 0 1 Y N N -4.592 6.827  7.767  3.067   -4.308 0.075  C23  RB9 30 
RB9 C24  C24  C 0 1 Y N N -3.569 3.123  11.004 -7.416  -1.028 -1.747 C24  RB9 31 
RB9 C25  C25  C 0 1 Y N N -4.533 1.179  10.469 -8.785  -0.888 0.029  C25  RB9 32 
RB9 C26  C26  C 0 1 Y N N -3.142 0.981  10.463 -7.760  0.059  0.202  C26  RB9 33 
RB9 C27  C27  C 0 1 Y N N -2.660 -0.313 10.183 -7.743  0.868  1.339  C27  RB9 34 
RB9 C28  C28  C 0 1 Y N N -3.557 -1.308 9.802  -8.725  0.736  2.280  C28  RB9 35 
RB9 C29  C29  C 0 1 Y N N -4.939 -1.082 9.723  -9.739  -0.197 2.114  C29  RB9 36 
RB9 C30  C30  C 0 1 Y N N -5.441 0.187  10.038 -9.775  -1.005 0.999  C30  RB9 37 
RB9 HN1  HN1  H 0 1 N N N -0.318 6.394  7.121  3.430   -1.188 -0.477 HN1  RB9 38 
RB9 HN2  HN2  H 0 1 N N N 2.385  6.139  7.974  0.429   -0.046 0.572  HN2  RB9 39 
RB9 H3   H3   H 0 1 N N N -2.124 4.861  6.977  4.559   -2.002 1.980  H3   RB9 40 
RB9 H3A  H3A  H 0 1 N N N -2.610 5.358  8.629  2.847   -2.489 1.961  H3A  RB9 41 
RB9 HN3  HN3  H 0 1 N N N 1.590  2.602  10.811 -3.360  1.833  -0.559 HN3  RB9 42 
RB9 HN4  HN4  H 0 1 N N N -5.672 2.925  10.859 -9.101  -2.234 -1.539 HN4  RB9 43 
RB9 H7   H7   H 0 1 N N N 1.586  11.365 8.726  3.761   3.962  -1.471 H7   RB9 44 
RB9 H10  H10  H 0 1 N N N 2.853  3.960  9.526  -2.230  0.250  0.899  H10  RB9 45 
RB9 H10A H10A H 0 0 N N N 1.375  3.875  8.534  -1.922  -0.740 -0.548 H10A RB9 46 
RB9 H11  H11  H 0 1 N N N -0.813 4.028  9.932  -4.322  -0.928 -0.930 H11  RB9 47 
RB9 H11A H11A H 0 0 N N N -0.221 2.430  9.311  -4.630  0.062  0.517  H11A RB9 48 
RB9 H12  H12  H 0 1 N N N -0.664 1.386  11.386 -5.779  1.754  -0.886 H12  RB9 49 
RB9 H12A H12A H 0 0 N N N -1.056 2.980  12.160 -5.471  0.763  -2.332 H12A RB9 50 
RB9 H14  H14  H 0 1 N N N -2.080 9.512  7.115  5.836   2.329  -1.945 H14  RB9 51 
RB9 H15  H15  H 0 1 N N N -4.143 10.902 7.033  8.222   2.202  -1.356 H15  RB9 52 
RB9 H16  H16  H 0 1 N N N -4.248 12.915 8.509  8.900   1.915  0.991  H16  RB9 53 
RB9 H17  H17  H 0 1 N N N -2.372 13.479 9.986  7.199   1.752  2.761  H17  RB9 54 
RB9 H18  H18  H 0 1 N N N -0.370 12.055 10.098 4.809   1.888  2.192  H18  RB9 55 
RB9 H19  H19  H 0 1 N N N -2.308 7.091  5.273  6.144   -2.969 0.416  H19  RB9 56 
RB9 H20  H20  H 0 1 N N N -4.124 8.400  4.223  6.711   -4.907 -0.993 H20  RB9 57 
RB9 H21  H21  H 0 1 N N N -6.238 8.729  5.477  4.944   -6.460 -1.721 H21  RB9 58 
RB9 H22  H22  H 0 1 N N N -6.474 7.811  7.755  2.610   -6.075 -1.038 H22  RB9 59 
RB9 H23  H23  H 0 1 N N N -4.734 6.395  8.746  2.044   -4.142 0.378  H23  RB9 60 
RB9 H24  H24  H 0 1 N N N -3.440 4.172  11.226 -7.005  -1.357 -2.690 H24  RB9 61 
RB9 H27  H27  H 0 1 N N N -1.605 -0.531 10.263 -6.957  1.596  1.475  H27  RB9 62 
RB9 H28  H28  H 0 1 N N N -3.175 -2.288 9.559  -8.711  1.362  3.160  H28  RB9 63 
RB9 H29  H29  H 0 1 N N N -5.607 -1.876 9.423  -10.508 -0.290 2.867  H29  RB9 64 
RB9 H30  H30  H 0 1 N N N -6.496 0.402  9.953  -10.569 -1.728 0.879  H30  RB9 65 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
RB9 C1  C2   SING N N 1  
RB9 C1  C5   SING Y N 2  
RB9 C1  C8   DOUB Y N 3  
RB9 N1  C2   SING N N 4  
RB9 N1  C3   SING N N 5  
RB9 O1  C2   DOUB N N 6  
RB9 S1  C7   SING Y N 7  
RB9 S1  C8   SING Y N 8  
RB9 N2  C8   SING N N 9  
RB9 N2  C9   SING N N 10 
RB9 O2  C9   DOUB N N 11 
RB9 C3  C4   SING N N 12 
RB9 N3  C10  SING N N 13 
RB9 N3  C11  SING N N 14 
RB9 C4  C19  DOUB Y N 15 
RB9 C4  C23  SING Y N 16 
RB9 N4  C24  SING Y N 17 
RB9 N4  C25  SING Y N 18 
RB9 C5  C6   SING Y N 19 
RB9 C5  C7   DOUB Y N 20 
RB9 C6  C14  DOUB Y N 21 
RB9 C6  C18  SING Y N 22 
RB9 C9  C10  SING N N 23 
RB9 C11 C12  SING N N 24 
RB9 C12 C13  SING N N 25 
RB9 C13 C24  DOUB Y N 26 
RB9 C13 C26  SING Y N 27 
RB9 C14 C15  SING Y N 28 
RB9 C15 C16  DOUB Y N 29 
RB9 C16 C17  SING Y N 30 
RB9 C17 C18  DOUB Y N 31 
RB9 C19 C20  SING Y N 32 
RB9 C20 C21  DOUB Y N 33 
RB9 C21 C22  SING Y N 34 
RB9 C22 C23  DOUB Y N 35 
RB9 C25 C26  DOUB Y N 36 
RB9 C25 C30  SING Y N 37 
RB9 C26 C27  SING Y N 38 
RB9 C27 C28  DOUB Y N 39 
RB9 C28 C29  SING Y N 40 
RB9 C29 C30  DOUB Y N 41 
RB9 N1  HN1  SING N N 42 
RB9 N2  HN2  SING N N 43 
RB9 C3  H3   SING N N 44 
RB9 C3  H3A  SING N N 45 
RB9 N3  HN3  SING N N 46 
RB9 N4  HN4  SING N N 47 
RB9 C7  H7   SING N N 48 
RB9 C10 H10  SING N N 49 
RB9 C10 H10A SING N N 50 
RB9 C11 H11  SING N N 51 
RB9 C11 H11A SING N N 52 
RB9 C12 H12  SING N N 53 
RB9 C12 H12A SING N N 54 
RB9 C14 H14  SING N N 55 
RB9 C15 H15  SING N N 56 
RB9 C16 H16  SING N N 57 
RB9 C17 H17  SING N N 58 
RB9 C18 H18  SING N N 59 
RB9 C19 H19  SING N N 60 
RB9 C20 H20  SING N N 61 
RB9 C21 H21  SING N N 62 
RB9 C22 H22  SING N N 63 
RB9 C23 H23  SING N N 64 
RB9 C24 H24  SING N N 65 
RB9 C27 H27  SING N N 66 
RB9 C28 H28  SING N N 67 
RB9 C29 H29  SING N N 68 
RB9 C30 H30  SING N N 69 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
RB9 SMILES           ACDLabs              12.01 "O=C(Nc2scc(c1ccccc1)c2C(=O)NCc3ccccc3)CNCCc5c4ccccc4nc5"                                                                                                                                     
RB9 SMILES_CANONICAL CACTVS               3.370 "O=C(CNCCc1c[nH]c2ccccc12)Nc3scc(c4ccccc4)c3C(=O)NCc5ccccc5"                                                                                                                                  
RB9 SMILES           CACTVS               3.370 "O=C(CNCCc1c[nH]c2ccccc12)Nc3scc(c4ccccc4)c3C(=O)NCc5ccccc5"                                                                                                                                  
RB9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CNC(=O)c2c(csc2NC(=O)CNCCc3c[nH]c4c3cccc4)c5ccccc5"                                                                                                                                
RB9 SMILES           "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)CNC(=O)c2c(csc2NC(=O)CNCCc3c[nH]c4c3cccc4)c5ccccc5"                                                                                                                                
RB9 InChI            InChI                1.03  "InChI=1S/C30H28N4O2S/c35-27(19-31-16-15-23-18-32-26-14-8-7-13-24(23)26)34-30-28(25(20-37-30)22-11-5-2-6-12-22)29(36)33-17-21-9-3-1-4-10-21/h1-14,18,20,31-32H,15-17,19H2,(H,33,36)(H,34,35)" 
RB9 InChIKey         InChI                1.03  NZMGUKNNKODUOD-UHFFFAOYSA-N                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
RB9 "SYSTEMATIC NAME" ACDLabs              12.01 "N-benzyl-2-({N-[2-(1H-indol-3-yl)ethyl]glycyl}amino)-4-phenylthiophene-3-carboxamide"              
RB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[2-[2-(1H-indol-3-yl)ethylamino]ethanoylamino]-4-phenyl-N-(phenylmethyl)thiophene-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
RB9 "Create component"     2010-12-16 PDBJ 
RB9 "Modify aromatic_flag" 2011-06-04 RCSB 
RB9 "Modify descriptor"    2011-06-04 RCSB 
# 
