data_S59
# 
_chem_comp.id                                    S59 
_chem_comp.name                                  Ilginatinib 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H20 F N7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "~{N}6-[(1~{S})-1-(4-fluorophenyl)ethyl]-4-(1-methylpyrazol-4-yl)-~{N}2-pyrazin-2-yl-pyridine-2,6-diamine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-13 
_chem_comp.pdbx_modified_date                    2023-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        389.429 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S59 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8BX9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S59 C13  C1  C 0 1 Y N N N N N 4.216 -14.754 5.205  -2.308 0.908  0.019  C13  S59 1  
S59 C15  C2  C 0 1 Y N N N N N 4.112 -13.193 7.073  -1.909 -1.459 0.017  C15  S59 2  
S59 C20  C3  C 0 1 Y N N N N N 4.444 -9.617  10.207 0.651  -4.631 0.071  C20  S59 3  
S59 C21  C4  C 0 1 Y N N N N N 3.671 -10.218 11.211 0.185  -5.917 -0.125 C21  S59 4  
S59 C24  C5  C 0 1 Y N N N N N 4.646 -15.101 3.846  -3.224 2.072  -0.076 C24  S59 5  
S59 C28  C6  C 0 1 Y N N N N N 4.573 -16.375 3.177  -2.857 3.429  0.009  C28  S59 6  
S59 C01  C7  C 0 1 N N N N N N 1.389 -17.018 10.124 1.691  1.979  2.065  C01  S59 7  
S59 C02  C8  C 0 1 N N S N N N 2.373 -15.980 9.609  1.813  1.495  0.618  C02  S59 8  
S59 C03  C9  C 0 1 Y N N N N N 3.608 -15.891 10.591 3.265  1.469  0.217  C03  S59 9  
S59 C04  C10 C 0 1 Y N N N N N 4.753 -16.717 10.428 4.068  0.410  0.597  C04  S59 10 
S59 C05  C11 C 0 1 Y N N N N N 5.828 -16.669 11.317 5.400  0.384  0.230  C05  S59 11 
S59 C06  C12 C 0 1 Y N N N N N 5.785 -15.784 12.433 5.931  1.421  -0.519 C06  S59 12 
S59 C07  C13 C 0 1 Y N N N N N 4.655 -14.953 12.585 5.126  2.482  -0.899 C07  S59 13 
S59 C08  C14 C 0 1 Y N N N N N 3.613 -15.019 11.688 3.793  2.502  -0.535 C08  S59 14 
S59 C11  C15 C 0 1 Y N N N N N 3.346 -15.394 7.392  -0.115 -0.023 0.307  C11  S59 15 
S59 C12  C16 C 0 1 Y N N N N N 3.666 -15.727 6.073  -0.938 1.090  0.218  C12  S59 16 
S59 C14  C17 C 0 1 Y N N N N N 4.462 -13.476 5.759  -2.796 -0.396 -0.083 C14  S59 17 
S59 C18  C18 C 0 1 Y N N N N N 4.115 -11.391 8.777  -1.492 -3.830 -0.093 C18  S59 18 
S59 C23  C19 C 0 1 Y N N N N N 3.338 -12.027 9.810  -1.956 -5.127 -0.301 C23  S59 19 
S59 C25  C20 C 0 1 Y N N N N N 5.335 -14.296 2.918  -4.574 2.022  -0.269 C25  S59 20 
S59 C29  C21 C 0 1 N N N N N N 6.368 -14.537 0.486  -6.424 3.698  -0.479 C29  S59 21 
S59 F09  F1  F 0 1 N N N N N N 6.777 -15.692 13.278 7.233  1.398  -0.878 F09  S59 22 
S59 N10  N1  N 0 1 N N N N N N 2.787 -16.282 8.246  1.251  0.147  0.505  N10  S59 23 
S59 N16  N2  N 0 1 Y N N N N N 3.574 -14.132 7.870  -0.614 -1.246 0.206  N16  S59 24 
S59 N17  N3  N 0 1 N N N N N N 4.361 -11.926 7.549  -2.385 -2.763 -0.082 N17  S59 25 
S59 N19  N4  N 0 1 Y N N N N N 4.643 -10.187 9.028  -0.195 -3.614 0.083  N19  S59 26 
S59 N22  N5  N 0 1 Y N N N N N 3.144 -11.446 11.003 -1.107 -6.136 -0.306 N22  S59 27 
S59 N26  N6  N 0 1 Y N N N N N 5.608 -15.065 1.793  -5.029 3.290  -0.297 N26  S59 28 
S59 N27  N7  N 0 1 Y N N N N N 5.139 -16.313 1.959  -3.938 4.151  -0.121 N27  S59 29 
S59 H201 H1  H 0 0 N N N N N N 4.893 -8.655  10.402 1.706  -4.456 0.219  H201 S59 30 
S59 H211 H2  H 0 0 N N N N N N 3.498 -9.703  12.145 0.878  -6.745 -0.130 H211 S59 31 
S59 H281 H3  H 0 0 N N N N N N 4.123 -17.262 3.598  -1.856 3.808  0.157  H281 S59 32 
S59 H012 H4  H 0 0 N N N N N N 1.094 -16.765 11.153 2.109  2.982  2.148  H012 S59 33 
S59 H013 H5  H 0 0 N N N N N N 0.498 -17.030 9.480  0.641  1.998  2.354  H013 S59 34 
S59 H011 H6  H 0 0 N N N N N N 1.863 -18.010 10.112 2.237  1.302  2.721  H011 S59 35 
S59 H021 H7  H 0 0 N N N N N N 1.873 -15.000 9.621  1.267  2.172  -0.039 H021 S59 36 
S59 H041 H8  H 0 0 N N N N N N 4.792 -17.401 9.593  3.654  -0.399 1.182  H041 S59 37 
S59 H051 H9  H 0 0 N N N N N N 6.690 -17.301 11.160 6.027  -0.443 0.527  H051 S59 38 
S59 H071 H10 H 0 0 N N N N N N 4.607 -14.260 13.412 5.539  3.291  -1.483 H071 S59 39 
S59 H081 H11 H 0 0 N N N N N N 2.762 -14.370 11.836 3.164  3.327  -0.835 H081 S59 40 
S59 H121 H12 H 0 0 N N N N N N 3.493 -16.731 5.715  -0.524 2.084  0.300  H121 S59 41 
S59 H141 H13 H 0 0 N N N N N N 4.927 -12.712 5.154  -3.850 -0.576 -0.236 H141 S59 42 
S59 H231 H14 H 0 0 N N N N N N 2.901 -12.996 9.619  -3.011 -5.307 -0.445 H231 S59 43 
S59 H251 H15 H 0 0 N N N N N N 5.605 -13.259 3.057  -5.170 1.128  -0.379 H251 S59 44 
S59 H293 H16 H 0 0 N N N N N N 6.445 -15.352 -0.249 -6.628 3.827  -1.542 H293 S59 45 
S59 H292 H17 H 0 0 N N N N N N 5.805 -13.700 0.048  -7.083 2.931  -0.073 H292 S59 46 
S59 H291 H18 H 0 0 N N N N N N 7.377 -14.196 0.761  -6.598 4.640  0.041  H291 S59 47 
S59 H101 H19 H 0 0 N N N N N N 1.965 -16.615 7.785  1.832  -0.627 0.569  H101 S59 48 
S59 H171 H20 H 0 0 N N N N N N 4.788 -11.303 6.893  -3.339 -2.928 -0.142 H171 S59 49 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S59 C29 N26  SING N N 1  
S59 N26 N27  SING Y N 2  
S59 N26 C25  SING Y N 3  
S59 N27 C28  DOUB Y N 4  
S59 C25 C24  DOUB Y N 5  
S59 C28 C24  SING Y N 6  
S59 C24 C13  SING N N 7  
S59 C13 C14  DOUB Y N 8  
S59 C13 C12  SING Y N 9  
S59 C14 C15  SING Y N 10 
S59 C12 C11  DOUB Y N 11 
S59 C15 N17  SING N N 12 
S59 C15 N16  DOUB Y N 13 
S59 C11 N16  SING Y N 14 
S59 C11 N10  SING N N 15 
S59 N17 C18  SING N N 16 
S59 N10 C02  SING N N 17 
S59 C18 N19  DOUB Y N 18 
S59 C18 C23  SING Y N 19 
S59 N19 C20  SING Y N 20 
S59 C02 C01  SING N N 21 
S59 C02 C03  SING N N 22 
S59 C23 N22  DOUB Y N 23 
S59 C20 C21  DOUB Y N 24 
S59 C04 C03  DOUB Y N 25 
S59 C04 C05  SING Y N 26 
S59 C03 C08  SING Y N 27 
S59 N22 C21  SING Y N 28 
S59 C05 C06  DOUB Y N 29 
S59 C08 C07  DOUB Y N 30 
S59 C06 C07  SING Y N 31 
S59 C06 F09  SING N N 32 
S59 C20 H201 SING N N 33 
S59 C21 H211 SING N N 34 
S59 C28 H281 SING N N 35 
S59 C01 H012 SING N N 36 
S59 C01 H013 SING N N 37 
S59 C01 H011 SING N N 38 
S59 C02 H021 SING N N 39 
S59 C04 H041 SING N N 40 
S59 C05 H051 SING N N 41 
S59 C07 H071 SING N N 42 
S59 C08 H081 SING N N 43 
S59 C12 H121 SING N N 44 
S59 C14 H141 SING N N 45 
S59 C23 H231 SING N N 46 
S59 C25 H251 SING N N 47 
S59 C29 H293 SING N N 48 
S59 C29 H292 SING N N 49 
S59 C29 H291 SING N N 50 
S59 N10 H101 SING N N 51 
S59 N17 H171 SING N N 52 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S59 InChI            InChI                1.06    "InChI=1S/C21H20FN7/c1-14(15-3-5-18(22)6-4-15)26-19-9-16(17-11-25-29(2)13-17)10-20(27-19)28-21-12-23-7-8-24-21/h3-14H,1-2H3,(H2,24,26,27,28)/t14-/m0/s1" 
S59 InChIKey         InChI                1.06    UQTPDWDAYHAZNT-AWEZNQCLSA-N                                                                                                                              
S59 SMILES_CANONICAL CACTVS               3.385   "C[C@H](Nc1cc(cc(Nc2cnccn2)n1)c3cnn(C)c3)c4ccc(F)cc4"                                                                                                    
S59 SMILES           CACTVS               3.385   "C[CH](Nc1cc(cc(Nc2cnccn2)n1)c3cnn(C)c3)c4ccc(F)cc4"                                                                                                     
S59 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@@H](c1ccc(cc1)F)Nc2cc(cc(n2)Nc3cnccn3)c4cnn(c4)C"                                                                                                   
S59 SMILES           "OpenEye OEToolkits" 3.1.0.0 "CC(c1ccc(cc1)F)Nc2cc(cc(n2)Nc3cnccn3)c4cnn(c4)C"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           S59 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   3.1.0.0 
_pdbx_chem_comp_identifier.identifier        "~{N}6-[(1~{S})-1-(4-fluorophenyl)ethyl]-4-(1-methylpyrazol-4-yl)-~{N}2-pyrazin-2-yl-pyridine-2,6-diamine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S59 "Create component" 2022-12-13 PDBE 
S59 "Initial release"  2023-12-20 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      S59 
_pdbx_chem_comp_synonyms.name         "~{N}6-[(1~{S})-1-(4-fluorophenyl)ethyl]-4-(1-methylpyrazol-4-yl)-~{N}2-pyrazin-2-yl-pyridine-2,6-diamine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
