data_UG9
# 
_chem_comp.id                                    UG9 
_chem_comp.name                                  "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-iodanyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H20 I N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-03 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        509.319 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     UG9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CEV 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
UG9 N   N1  N 0 1 N N N 19.116 13.593 41.576 8.052  -0.127 0.846  N   UG9 1  
UG9 CA  C1  C 0 1 N N S 20.527 13.355 41.162 7.229  -1.183 0.241  CA  UG9 2  
UG9 C   C2  C 0 1 N N N 20.571 12.226 40.125 8.072  -1.993 -0.710 C   UG9 3  
UG9 O   O1  O 0 1 N N N 21.615 11.544 40.056 7.681  -3.225 -1.071 O   UG9 4  
UG9 CB  C3  C 0 1 N N N 21.396 13.016 42.376 6.065  -0.548 -0.522 CB  UG9 5  
UG9 OXT O2  O 0 1 N N N 19.548 12.072 39.415 9.100  -1.533 -1.148 OXT UG9 6  
UG9 C10 C4  C 0 1 Y N N 21.998 22.896 44.052 -4.817 2.392  -1.802 C10 UG9 7  
UG9 C12 C5  C 0 1 Y N N 22.710 21.245 45.349 -2.989 1.404  -0.814 C12 UG9 8  
UG9 C13 C6  C 0 1 Y N N 22.651 22.050 46.497 -3.752 0.237  -0.619 C13 UG9 9  
UG9 C14 C7  C 0 1 Y N N 23.069 21.224 47.580 -2.870 -0.722 0.043  C14 UG9 10 
UG9 C16 C8  C 0 1 Y N N 23.361 19.993 47.086 -1.684 -0.112 0.204  C16 UG9 11 
UG9 C18 C9  C 0 1 N N R 23.317 18.859 44.815 -0.634 2.118  -0.304 C18 UG9 12 
UG9 C19 C10 C 0 1 N N R 24.716 18.259 44.799 -0.684 2.997  0.965  C19 UG9 13 
UG9 C21 C11 C 0 1 N N S 24.438 16.847 44.261 0.801  3.190  1.347  C21 UG9 14 
UG9 C23 C12 C 0 1 N N S 22.971 16.593 44.633 1.572  2.404  0.263  C23 UG9 15 
UG9 C25 C13 C 0 1 N N N 22.774 15.423 45.577 2.793  1.713  0.873  C25 UG9 16 
UG9 C27 C14 C 0 1 N N N 21.780 14.229 43.212 5.141  0.170  0.463  C27 UG9 17 
UG9 C8  C15 C 0 1 Y N N 22.215 23.385 46.297 -5.085 0.224  -1.058 C8  UG9 18 
UG9 I15 I1  I 0 1 N N N 23.161 21.807 49.604 -3.361 -2.672 0.629  I15 UG9 19 
UG9 N11 N2  N 0 1 Y N N 22.392 21.623 44.107 -3.564 2.449  -1.407 N11 UG9 20 
UG9 N17 N3  N 0 1 Y N N 23.143 19.993 45.719 -1.743 1.160  -0.305 N17 UG9 21 
UG9 N7  N4  N 0 1 N N N 22.103 24.281 47.282 -5.875 -0.898 -0.890 N7  UG9 22 
UG9 N9  N5  N 0 1 Y N N 21.892 23.779 45.047 -5.569 1.318  -1.640 N9  UG9 23 
UG9 O20 O3  O 0 1 N N N 25.567 18.996 43.927 -1.298 4.255  0.679  O20 UG9 24 
UG9 O22 O4  O 0 1 N N N 24.619 16.771 42.851 1.152  4.574  1.307  O22 UG9 25 
UG9 O24 O5  O 0 1 N N N 22.478 17.809 45.239 0.630  1.424  -0.223 O24 UG9 26 
UG9 S26 S1  S 0 1 N N N 22.847 13.875 44.636 3.760  0.923  -0.442 S26 UG9 27 
UG9 H1  H1  H 0 1 N N N 19.086 14.329 42.252 8.426  0.490  0.140  H1  UG9 28 
UG9 H2  H2  H 0 1 N N N 18.574 13.852 40.777 7.527  0.390  1.536  H2  UG9 29 
UG9 H4  H4  H 0 1 N N N 20.922 14.270 40.696 6.839  -1.833 1.025  H4  UG9 30 
UG9 H5  H5  H 0 1 N N N 21.519 10.884 39.379 8.254  -3.706 -1.683 H5  UG9 31 
UG9 H6  H6  H 0 1 N N N 20.840 12.315 43.016 6.453  0.169  -1.246 H6  UG9 32 
UG9 H7  H7  H 0 1 N N N 22.318 12.534 42.019 5.506  -1.325 -1.044 H7  UG9 33 
UG9 H8  H8  H 0 1 N N N 21.729 23.261 43.072 -5.251 3.261  -2.275 H8  UG9 34 
UG9 H9  H9  H 0 1 N N N 23.707 19.150 47.666 -0.814 -0.557 0.664  H9  UG9 35 
UG9 H10 H10 H 0 1 N N N 23.054 19.164 43.791 -0.669 2.739  -1.199 H10 UG9 36 
UG9 H11 H11 H 0 1 N N N 25.122 18.204 45.820 -1.220 2.485  1.764  H11 UG9 37 
UG9 H12 H12 H 0 1 N N N 25.080 16.122 44.783 0.999  2.773  2.334  H12 UG9 38 
UG9 H13 H13 H 0 1 N N N 22.411 16.392 43.708 1.876  3.071  -0.545 H13 UG9 39 
UG9 H14 H14 H 0 1 N N N 23.568 15.428 46.339 3.411  2.452  1.384  H14 UG9 40 
UG9 H15 H15 H 0 1 N N N 21.794 15.508 46.068 2.464  0.958  1.586  H15 UG9 41 
UG9 H16 H16 H 0 1 N N N 22.308 14.940 42.559 4.753  -0.547 1.187  H16 UG9 42 
UG9 H17 H17 H 0 1 N N N 20.855 14.692 43.586 5.700  0.947  0.985  H17 UG9 43 
UG9 H18 H18 H 0 1 N N N 21.778 25.150 46.908 -5.510 -1.689 -0.464 H18 UG9 44 
UG9 H19 H19 H 0 1 N N N 21.452 23.947 47.963 -6.795 -0.894 -1.198 H19 UG9 45 
UG9 H20 H20 H 0 1 N N N 25.718 19.862 44.288 -1.355 4.847  1.441  H20 UG9 46 
UG9 H21 H21 H 0 1 N N N 25.531 16.931 42.639 0.697  5.115  1.967  H21 UG9 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
UG9 OXT C   DOUB N N 1  
UG9 O   C   SING N N 2  
UG9 C   CA  SING N N 3  
UG9 CA  N   SING N N 4  
UG9 CA  CB  SING N N 5  
UG9 CB  C27 SING N N 6  
UG9 O22 C21 SING N N 7  
UG9 C27 S26 SING N N 8  
UG9 O20 C19 SING N N 9  
UG9 C10 N11 DOUB Y N 10 
UG9 C10 N9  SING Y N 11 
UG9 N11 C12 SING Y N 12 
UG9 C21 C23 SING N N 13 
UG9 C21 C19 SING N N 14 
UG9 C23 O24 SING N N 15 
UG9 C23 C25 SING N N 16 
UG9 S26 C25 SING N N 17 
UG9 C19 C18 SING N N 18 
UG9 C18 O24 SING N N 19 
UG9 C18 N17 SING N N 20 
UG9 N9  C8  DOUB Y N 21 
UG9 C12 N17 SING Y N 22 
UG9 C12 C13 DOUB Y N 23 
UG9 N17 C16 SING Y N 24 
UG9 C8  C13 SING Y N 25 
UG9 C8  N7  SING N N 26 
UG9 C13 C14 SING Y N 27 
UG9 C16 C14 DOUB Y N 28 
UG9 C14 I15 SING N N 29 
UG9 N   H1  SING N N 30 
UG9 N   H2  SING N N 31 
UG9 CA  H4  SING N N 32 
UG9 O   H5  SING N N 33 
UG9 CB  H6  SING N N 34 
UG9 CB  H7  SING N N 35 
UG9 C10 H8  SING N N 36 
UG9 C16 H9  SING N N 37 
UG9 C18 H10 SING N N 38 
UG9 C19 H11 SING N N 39 
UG9 C21 H12 SING N N 40 
UG9 C23 H13 SING N N 41 
UG9 C25 H14 SING N N 42 
UG9 C25 H15 SING N N 43 
UG9 C27 H16 SING N N 44 
UG9 C27 H17 SING N N 45 
UG9 N7  H18 SING N N 46 
UG9 N7  H19 SING N N 47 
UG9 O20 H20 SING N N 48 
UG9 O22 H21 SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
UG9 InChI            InChI                1.06  "InChI=1S/C15H20IN5O5S/c16-6-3-21(13-9(6)12(18)19-5-20-13)14-11(23)10(22)8(26-14)4-27-2-1-7(17)15(24)25/h3,5,7-8,10-11,14,22-23H,1-2,4,17H2,(H,24,25)(H2,18,19,20)/t7-,8+,10+,11+,14+/m0/s1" 
UG9 InChIKey         InChI                1.06  KWPUSSSCXHTEIW-TWBCTODHSA-N                                                                                                                                                                  
UG9 SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cc(I)c3c(N)ncnc23)C(O)=O"                                                                                                                       
UG9 SMILES           CACTVS               3.385 "N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cc(I)c3c(N)ncnc23)C(O)=O"                                                                                                                              
UG9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CSCC[C@@H](C(=O)O)N)O)O)N)I"                                                                                                                    
UG9 SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(c2c(ncnc2n1C3C(C(C(O3)CSCCC(C(=O)O)N)O)O)N)I"                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           UG9 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(4-azanyl-5-iodanyl-pyrrolo[2,3-d]pyrimidin-7-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
UG9 "Create component" 2023-02-03 PDBE 
UG9 "Initial release"  2023-04-05 RCSB 
# 
