data_X99
#

_chem_comp.id                                   X99
_chem_comp.name                                 "2-{3-[(2S)-4,4-difluoro-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]-3-oxopropyl}-isoindole-1,3(2H)-dione"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H21 F2 N3 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-10-09
_chem_comp.pdbx_modified_date                   2020-08-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       405.395
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    X99
_chem_comp.pdbx_model_coordinates_details       "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3EQ7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
X99  C     C1   C  0  1  N  N  N   6.773  38.021  30.682   0.532  -0.192  -0.581  C     X99   1  
X99  O     O1   O  0  1  N  N  N   7.422  37.914  29.634   0.799  -1.128  -1.305  O     X99   2  
X99  C1    C2   C  0  1  N  N  N   7.312  38.436  31.837  -0.900   0.080  -0.199  C1    X99   3  
X99  C2    C3   C  0  1  N  N  N   8.831  38.657  31.684  -1.810  -0.957  -0.859  C2    X99   4  
X99  N3    N1   N  0  1  N  N  N   9.430  38.631  33.006  -3.202  -0.692  -0.488  N3    X99   5  
X99  C4    C4   C  0  1  N  N  N  10.075  37.580  33.534  -4.036   0.105  -1.180  C4    X99   6  
X99  C5    C5   C  0  1  N  N  N   9.440  39.671  33.873  -3.817  -1.218   0.587  C5    X99   7  
X99  O6    O2   O  0  1  N  N  N  10.210  36.482  33.024  -3.758   0.710  -2.196  O6    X99   8  
X99  O7    O3   O  0  1  N  N  N   8.925  40.777  33.704  -3.313  -1.976   1.391  O7    X99   9  
X99  C8    C6   C  0  1  Y  N  N  10.584  37.941  34.905  -5.347   0.122  -0.498  C8    X99  10  
X99  C9    C7   C  0  1  Y  N  N  11.303  37.212  35.868  -6.558   0.749  -0.743  C9    X99  11  
X99  C10   C8   C  0  1  Y  N  N  11.591  37.880  37.073  -7.624   0.547   0.120  C10   X99  12  
X99  C11   C9   C  0  1  Y  N  N  11.187  39.214  37.291  -7.486  -0.275   1.223  C11   X99  13  
X99  C12   C10  C  0  1  Y  N  N  10.470  39.932  36.318  -6.281  -0.909   1.481  C12   X99  14  
X99  C13   C11  C  0  1  Y  N  N  10.184  39.261  35.122  -5.208  -0.720   0.625  C13   X99  15  
X99  N     N2   N  0  1  N  N  N   5.430  38.009  30.683   1.517   0.600  -0.113  N     X99  16  
X99  CD    C12  C  0  1  N  N  N   4.483  38.425  31.731   1.336   1.762   0.776  CD    X99  17  
X99  CA    C13  C  0  1  N  N  S   4.729  37.572  29.472   2.951   0.445  -0.400  CA    X99  18  
X99  CB    C14  C  0  1  N  N  N   3.499  36.895  30.017   3.689   1.590   0.325  CB    X99  19  
X99  CG    C15  C  0  1  N  N  N   3.218  37.631  31.336   2.576   2.654   0.520  CG    X99  20  
X99  C3    C16  C  0  1  N  N  N   4.380  38.725  28.543   3.435  -0.886   0.116  C3    X99  21  
X99  O1    O5   O  0  1  N  N  N   4.702  39.883  28.819   2.664  -1.638   0.671  O1    X99  22  
X99  F1    F1   F  0  1  N  N  N   2.929  36.729  32.305   2.410   3.424  -0.636  F1    X99  23  
X99  F2    F2   F  0  1  N  N  N   2.178  38.481  31.155   2.847   3.467   1.626  F2    X99  24  
X99  N1    N3   N  0  1  N  N  N   3.697  38.426  27.426   4.727  -1.239  -0.040  N1    X99  25  
X99  CD1   C17  C  0  1  N  N  N   3.222  37.069  27.098   5.331  -2.500   0.413  CD1   X99  26  
X99  CA1   C18  C  0  1  N  N  N   3.288  39.404  26.421   5.766  -0.426  -0.698  CA1   X99  27  
X99  CB1   C19  C  0  1  N  N  N   2.840  38.522  25.254   7.102  -0.928  -0.096  CB1   X99  28  
X99  CG1   C20  C  0  1  N  N  N   2.344  37.288  25.900   6.828  -2.451   0.042  CG1   X99  29  
X99  H1    H1   H  0  1  N  N  N   6.840  39.384  32.133  -1.005   0.020   0.884  H1    X99  30  
X99  H1A   H2   H  0  1  N  N  N   7.142  37.665  32.603  -1.182   1.078  -0.536  H1A   X99  31  
X99  H2    H3   H  0  1  N  N  N   9.264  37.860  31.062  -1.705  -0.896  -1.942  H2    X99  32  
X99  H2A   H4   H  0  1  N  N  N   9.026  39.625  31.199  -1.528  -1.955  -0.522  H2A   X99  33  
X99  H9    H5   H  0  1  N  N  N  11.618  36.194  35.693  -6.671   1.393  -1.603  H9    X99  34  
X99  H10   H6   H  0  1  N  N  N  12.134  37.360  37.848  -8.568   1.036  -0.070  H10   X99  35  
X99  H11   H7   H  0  1  N  N  N  11.434  39.694  38.226  -8.324  -0.424   1.888  H11   X99  36  
X99  H12   H8   H  0  1  N  N  N  10.155  40.952  36.484  -6.179  -1.550   2.344  H12   X99  37  
X99  HD    H11  H  0  1  N  N  N   4.838  38.166  32.739   0.423   2.298   0.518  HD    X99  38  
X99  HDA   H12  H  0  1  N  N  N   4.328  39.513  31.785   1.305   1.441   1.818  HDA   X99  39  
X99  HA    H13  H  0  1  N  N  N   5.346  36.913  28.844   3.123   0.514  -1.474  HA    X99  40  
X99  HB    H14  H  0  1  N  N  N   2.652  36.986  29.321   4.070   1.253   1.289  HB    X99  41  
X99  HBA   H15  H  0  1  N  N  N   3.645  35.814  30.162   4.496   1.981  -0.294  HBA   X99  42  
X99  HD1   H18  H  0  1  N  N  N   4.058  36.393  26.868   5.219  -2.598   1.492  HD1   X99  43  
X99  HDA1  H19  H  0  0  N  N  N   2.692  36.588  27.934   4.852  -3.341  -0.089  HDA1  X99  44  
X99  HA1   H20  H  0  1  N  N  N   2.472  40.046  26.784   5.750  -0.591  -1.776  HA1   X99  45  
X99  HAA   H21  H  0  1  N  N  N   4.089  40.107  26.150   5.622   0.630  -0.473  HAA   X99  46  
X99  HB1   H22  H  0  1  N  N  N   2.049  39.010  24.666   7.932  -0.742  -0.778  HB1   X99  47  
X99  HBA1  H23  H  0  0  N  N  N   3.655  38.323  24.542   7.288  -0.473   0.877  HBA1  X99  48  
X99  HG    H24  H  0  1  N  N  N   2.410  36.435  25.209   7.436  -2.884   0.835  HG    X99  49  
X99  HGA   H25  H  0  1  N  N  N   1.287  37.382  26.188   7.008  -2.960  -0.905  HGA   X99  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
X99  C    C1    SING  N  N   1  
X99  O    C     DOUB  N  N   2  
X99  C1   H1    SING  N  N   3  
X99  C1   H1A   SING  N  N   4  
X99  C2   C1    SING  N  N   5  
X99  C2   N3    SING  N  N   6  
X99  C2   H2    SING  N  N   7  
X99  C2   H2A   SING  N  N   8  
X99  N3   C4    SING  N  N   9  
X99  N3   C5    SING  N  N  10  
X99  C4   C8    SING  N  N  11  
X99  C5   C13   SING  N  N  12  
X99  O6   C4    DOUB  N  N  13  
X99  O7   C5    DOUB  N  N  14  
X99  C8   C13   DOUB  Y  N  15  
X99  C8   C9    SING  Y  N  16  
X99  C9   C10   DOUB  Y  N  17  
X99  C9   H9    SING  N  N  18  
X99  C10  C11   SING  Y  N  19  
X99  C10  H10   SING  N  N  20  
X99  C11  H11   SING  N  N  21  
X99  C12  C11   DOUB  Y  N  22  
X99  C12  H12   SING  N  N  23  
X99  C13  C12   SING  Y  N  24  
X99  N    CD    SING  N  N  25  
X99  CD   HD    SING  N  N  26  
X99  CD   HDA   SING  N  N  27  
X99  CA   N     SING  N  N  28  
X99  CA   CB    SING  N  N  29  
X99  CA   HA    SING  N  N  30  
X99  CB   CG    SING  N  N  31  
X99  CB   HB    SING  N  N  32  
X99  CB   HBA   SING  N  N  33  
X99  CG   CD    SING  N  N  34  
X99  CG   F1    SING  N  N  35  
X99  C3   CA    SING  N  N  36  
X99  C3   O1    DOUB  N  N  37  
X99  F2   CG    SING  N  N  38  
X99  N1   CD1   SING  N  N  39  
X99  N1   CA1   SING  N  N  40  
X99  CD1  CG1   SING  N  N  41  
X99  CA1  CB1   SING  N  N  42  
X99  CB1  CG1   SING  N  N  43  
X99  CD1  HD1   SING  N  N  44  
X99  CD1  HDA1  SING  N  N  45  
X99  CA1  HA1   SING  N  N  46  
X99  CA1  HAA   SING  N  N  47  
X99  CB1  HB1   SING  N  N  48  
X99  CB1  HBA1  SING  N  N  49  
X99  CG1  HG    SING  N  N  50  
X99  CG1  HGA   SING  N  N  51  
X99  C    N     SING  N  N  52  
X99  C3   N1    SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
X99  SMILES            ACDLabs               10.04  "FC4(F)CC(C(=O)N1CCCC1)N(C(=O)CCN3C(=O)c2ccccc2C3=O)C4"  
X99  SMILES_CANONICAL  CACTVS                3.341  "FC1(F)C[C@H](N(C1)C(=O)CCN2C(=O)c3ccccc3C2=O)C(=O)N4CCCC4"  
X99  SMILES            CACTVS                3.341  "FC1(F)C[CH](N(C1)C(=O)CCN2C(=O)c3ccccc3C2=O)C(=O)N4CCCC4"  
X99  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1ccc2c(c1)C(=O)N(C2=O)CCC(=O)N3CC(C[C@H]3C(=O)N4CCCC4)(F)F"  
X99  SMILES            "OpenEye OEToolkits"  1.5.0  "c1ccc2c(c1)C(=O)N(C2=O)CCC(=O)N3CC(CC3C(=O)N4CCCC4)(F)F"  
X99  InChI             InChI                 1.03   "InChI=1S/C20H21F2N3O4/c21-20(22)11-15(19(29)23-8-3-4-9-23)25(12-20)16(26)7-10-24-17(27)13-5-1-2-6-14(13)18(24)28/h1-2,5-6,15H,3-4,7-12H2/t15-/m0/s1"  
X99  InChIKey          InChI                 1.03   ZSXNPAWXICXNGZ-HNNXBMFYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
X99  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-{3-[(2S)-4,4-difluoro-2-(pyrrolidin-1-ylcarbonyl)pyrrolidin-1-yl]-3-oxopropyl}-1H-isoindole-1,3(2H)-dione"  
X99  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[3-[(2S)-4,4-difluoro-2-pyrrolidin-1-ylcarbonyl-pyrrolidin-1-yl]-3-oxo-propyl]isoindole-1,3-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
X99  "Create component"          2008-10-09  RCSB  
X99  "Modify aromatic_flag"      2011-06-04  RCSB  
X99  "Modify descriptor"         2011-06-04  RCSB  
X99  "Modify subcomponent list"  2012-01-11  RCSB  
X99  "Other modification"        2020-08-12  RCSB  
##
