data_XF9
# 
_chem_comp.id                                    XF9 
_chem_comp.name                                  "[3-chloro-5-(methanesulfonyl)phenyl]methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H26 Cl N5 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-06 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        532.012 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XF9 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4R 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XF9 C02  C1  C  0 1 N N N N N N 14.691 10.317 -49.641 -1.306 3.743  -0.718 C02  XF9 1  
XF9 C04  C2  C  0 1 N N N N N N 12.512 9.941  -48.368 0.384  3.352  1.090  C04  XF9 2  
XF9 C05  C3  C  0 1 N N N N N N 11.535 9.941  -49.501 -0.778 3.405  2.088  C05  XF9 3  
XF9 C06  C4  C  0 1 N N R N N N 12.845 11.822 -50.593 -2.998 2.845  0.993  C06  XF9 4  
XF9 C07  C5  C  0 1 N N S N N N 11.526 11.272 -50.263 -1.798 2.322  1.889  C07  XF9 5  
XF9 N09  N1  N  0 1 N N N N N N 11.256 12.388 -52.305 -2.760 0.474  0.764  N09  XF9 6  
XF9 C10  C6  C  0 1 N N N N N N 12.568 12.814 -51.729 -3.806 1.491  1.033  C10  XF9 7  
XF9 C13  C7  C  0 1 N N N N N N 10.496 13.070 -53.366 -2.956 -0.722 0.174  C13  XF9 8  
XF9 C16  C8  C  0 1 Y N N N N N 9.013  11.190 -54.187 -4.530 -2.102 -1.179 C16  XF9 9  
XF9 C17  C9  C  0 1 Y N N N N N 7.770  10.717 -54.638 -5.788 -2.523 -1.490 C17  XF9 10 
XF9 C18  C10 C  0 1 Y N N N N N 8.103  13.414 -54.024 -5.406 -0.667 0.562  C18  XF9 11 
XF9 C19  C11 C  0 1 Y N N N N N 6.835  12.930 -54.500 -6.700 -1.087 0.242  C19  XF9 12 
XF9 C20  C12 C  0 1 Y N N N N N 6.676  11.602 -54.798 -6.885 -2.026 -0.789 C20  XF9 13 
XF9 C24  C13 C  0 1 N N N N N N 14.102 8.140  -48.237 0.595  2.267  -1.097 C24  XF9 14 
XF9 C27  C14 C  0 1 N N N N N N 13.217 6.204  -47.141 2.508  0.964  -1.681 C27  XF9 15 
XF9 C28  C15 C  0 1 Y N N N N N 12.391 6.017  -45.906 3.733  0.373  -1.032 C28  XF9 16 
XF9 N01  N2  N  0 1 N N N N N N 13.833 9.493  -48.782 -0.086 3.090  -0.276 N01  XF9 17 
XF9 C03  C16 C  0 1 N N N N N N 13.923 10.732 -50.884 -2.506 2.873  -0.449 C03  XF9 18 
XF9 C08  C17 C  0 1 N N N N N N 10.879 11.143 -51.605 -1.461 0.999  1.256  C08  XF9 19 
XF9 C14  C18 C  0 1 Y N N N N N 9.180  12.543 -53.863 -4.326 -1.170 -0.152 C14  XF9 20 
XF9 O15  O1  O  0 1 N N N N N N 10.960 14.104 -53.834 -2.005 -1.432 -0.091 O15  XF9 21 
XF9 N21  N3  N  0 1 Y N N N N N 5.368  11.407 -55.235 -8.238 -2.248 -0.863 N21  XF9 22 
XF9 N22  N4  N  0 1 Y N N N N N 4.730  12.619 -55.189 -8.832 -1.442 0.118  N22  XF9 23 
XF9 N23  N5  N  0 1 Y N N N N N 5.635  13.562 -54.741 -7.921 -0.783 0.743  N23  XF9 24 
XF9 O25  O2  O  0 1 N N N N N N 15.183 7.568  -48.462 0.144  1.990  -2.190 O25  XF9 25 
XF9 O26  O3  O  0 1 N N N N N N 13.120 7.541  -47.468 1.776  1.752  -0.705 O26  XF9 26 
XF9 C29  C19 C  0 1 Y N N N N N 12.085 4.710  -45.482 3.691  -0.909 -0.517 C29  XF9 27 
XF9 C30  C20 C  0 1 Y N N N N N 11.316 4.534  -44.330 4.815  -1.453 0.077  C30  XF9 28 
XF9 C31  C21 C  0 1 Y N N N N N 10.823 5.592  -43.598 5.980  -0.714 0.158  C31  XF9 29 
XF9 C32  C22 C  0 1 Y N N N N N 11.138 6.908  -44.035 6.022  0.570  -0.358 C32  XF9 30 
XF9 C33  C23 C  0 1 Y N N N N N 11.922 7.106  -45.185 4.899  1.111  -0.958 C33  XF9 31 
XF9 CL34 CL1 CL 0 0 N N N N N N 10.544 8.269  -43.176 7.485  1.498  -0.257 CL34 XF9 32 
XF9 S35  S1  S  0 1 N N N N N N 10.942 2.846  -43.828 4.761  -3.087 0.733  S35  XF9 33 
XF9 O36  O4  O  0 1 N N N N N N 12.060 1.930  -44.110 5.757  -3.090 1.747  O36  XF9 34 
XF9 O37  O5  O  0 1 N N N N N N 10.637 2.929  -42.380 3.392  -3.293 1.051  O37  XF9 35 
XF9 C38  C24 C  0 1 N N N N N N 9.495  2.355  -44.805 5.260  -4.147 -0.651 C38  XF9 36 
XF9 H40  H1  H  0 1 N N N N N N 15.006 11.215 -49.089 -1.421 4.687  -0.186 H40  XF9 37 
XF9 H39  H2  H  0 1 N N N N N N 15.578 9.737  -49.936 -1.239 3.940  -1.788 H39  XF9 38 
XF9 H44  H3  H  0 1 N N N N N N 12.141 9.269  -47.580 0.912  4.305  1.108  H44  XF9 39 
XF9 H43  H4  H  0 1 N N N N N N 12.593 10.963 -47.970 1.071  2.560  1.387  H43  XF9 40 
XF9 H45  H5  H  0 1 N N N N N N 11.804 9.135  -50.200 -0.375 3.322  3.097  H45  XF9 41 
XF9 H46  H6  H  0 1 N N N N N N 10.528 9.757  -49.099 -1.274 4.372  1.994  H46  XF9 42 
XF9 H11  H7  H  0 1 N N N N N N 13.200 12.403 -49.729 -3.514 3.737  1.349  H11  XF9 43 
XF9 H12  H8  H  0 1 N N N N N N 10.965 12.008 -49.668 -2.222 2.096  2.867  H12  XF9 44 
XF9 H50  H9  H  0 1 N N N N N N 12.504 13.840 -51.339 -4.251 1.336  2.016  H50  XF9 45 
XF9 H49  H10 H  0 1 N N N N N N 13.360 12.760 -52.491 -4.570 1.474  0.256  H49  XF9 46 
XF9 H51  H11 H  0 1 N N N N N N 9.844  10.508 -54.089 -3.684 -2.491 -1.726 H51  XF9 47 
XF9 H52  H12 H  0 1 N N N N N N 7.647  9.668  -54.865 -5.936 -3.244 -2.280 H52  XF9 48 
XF9 H53  H13 H  0 1 N N N N N N 8.222  14.461 -53.789 -5.248 0.053  1.352  H53  XF9 49 
XF9 H55  H14 H  0 1 N N N N N N 12.826 5.582  -47.959 2.808  1.603  -2.511 H55  XF9 50 
XF9 H56  H15 H  0 1 N N N N N N 14.265 5.934  -46.944 1.870  0.162  -2.052 H56  XF9 51 
XF9 H41  H16 H  0 1 N N N N N N 14.636 11.131 -51.621 -3.324 3.216  -1.081 H41  XF9 52 
XF9 H42  H17 H  0 1 N N N N N N 13.423 9.845  -51.300 -2.260 1.853  -0.744 H42  XF9 53 
XF9 H47  H18 H  0 1 N N N N N N 11.262 10.262 -52.141 -0.770 1.140  0.425  H47  XF9 54 
XF9 H48  H19 H  0 1 N N N N N N 9.786  11.066 -51.506 -1.034 0.322  1.995  H48  XF9 55 
XF9 H54  H20 H  0 1 N N N N N N 4.967  10.539 -55.529 -8.694 -2.846 -1.476 H54  XF9 56 
XF9 H57  H21 H  0 1 N N N N N N 12.440 3.856  -46.040 2.781  -1.487 -0.579 H57  XF9 57 
XF9 H58  H22 H  0 1 N N N N N N 10.216 5.427  -42.720 6.858  -1.138 0.623  H58  XF9 58 
XF9 H59  H23 H  0 1 N N N N N N 12.160 8.109  -45.508 4.933  2.111  -1.364 H59  XF9 59 
XF9 H62  H24 H  0 1 N N N N N N 9.210  1.325  -44.546 6.263  -3.872 -0.977 H62  XF9 60 
XF9 H61  H25 H  0 1 N N N N N N 8.657  3.033  -44.586 5.255  -5.189 -0.332 H61  XF9 61 
XF9 H60  H26 H  0 1 N N N N N N 9.740  2.410  -45.876 4.562  -4.017 -1.478 H60  XF9 62 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XF9 N01 C02  SING N N 1  
XF9 C02 C03  SING N N 2  
XF9 N01 C04  SING N N 3  
XF9 C04 C05  SING N N 4  
XF9 C03 C06  SING N N 5  
XF9 C05 C07  SING N N 6  
XF9 C06 C07  SING N N 7  
XF9 C07 C08  SING N N 8  
XF9 C08 N09  SING N N 9  
XF9 C06 C10  SING N N 10 
XF9 N09 C10  SING N N 11 
XF9 N09 C13  SING N N 12 
XF9 C13 C14  SING N N 13 
XF9 C13 O15  DOUB N N 14 
XF9 C14 C16  DOUB Y N 15 
XF9 C16 C17  SING Y N 16 
XF9 C14 C18  SING Y N 17 
XF9 C18 C19  DOUB Y N 18 
XF9 C17 C20  DOUB Y N 19 
XF9 C19 C20  SING Y N 20 
XF9 C20 N21  SING Y N 21 
XF9 N21 N22  SING Y N 22 
XF9 C19 N23  SING Y N 23 
XF9 N22 N23  DOUB Y N 24 
XF9 N01 C24  SING N N 25 
XF9 C24 O25  DOUB N N 26 
XF9 C24 O26  SING N N 27 
XF9 O26 C27  SING N N 28 
XF9 C27 C28  SING N N 29 
XF9 C28 C29  DOUB Y N 30 
XF9 C29 C30  SING Y N 31 
XF9 C30 C31  DOUB Y N 32 
XF9 C31 C32  SING Y N 33 
XF9 C28 C33  SING Y N 34 
XF9 C32 C33  DOUB Y N 35 
XF9 C32 CL34 SING N N 36 
XF9 C30 S35  SING N N 37 
XF9 S35 O36  DOUB N N 38 
XF9 S35 O37  DOUB N N 39 
XF9 S35 C38  SING N N 40 
XF9 C02 H40  SING N N 41 
XF9 C02 H39  SING N N 42 
XF9 C04 H44  SING N N 43 
XF9 C04 H43  SING N N 44 
XF9 C05 H45  SING N N 45 
XF9 C05 H46  SING N N 46 
XF9 C06 H11  SING N N 47 
XF9 C07 H12  SING N N 48 
XF9 C10 H50  SING N N 49 
XF9 C10 H49  SING N N 50 
XF9 C16 H51  SING N N 51 
XF9 C17 H52  SING N N 52 
XF9 C18 H53  SING N N 53 
XF9 C27 H55  SING N N 54 
XF9 C27 H56  SING N N 55 
XF9 C03 H41  SING N N 56 
XF9 C03 H42  SING N N 57 
XF9 C08 H47  SING N N 58 
XF9 C08 H48  SING N N 59 
XF9 N21 H54  SING N N 60 
XF9 C29 H57  SING N N 61 
XF9 C31 H58  SING N N 62 
XF9 C33 H59  SING N N 63 
XF9 C38 H62  SING N N 64 
XF9 C38 H61  SING N N 65 
XF9 C38 H60  SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XF9 SMILES           ACDLabs              12.01 "CS(=O)(=O)c1cc(cc(Cl)c1)COC(=O)N1CCC2CN(CC2CC1)C(=O)c1cc2nn[NH]c2cc1"                                                                                                                    
XF9 InChI            InChI                1.06  "InChI=1S/C24H26ClN5O5S/c1-36(33,34)20-9-15(8-19(25)11-20)14-35-24(32)29-6-4-17-12-30(13-18(17)5-7-29)23(31)16-2-3-21-22(10-16)27-28-26-21/h2-3,8-11,17-18H,4-7,12-14H2,1H3,(H,26,27,28)" 
XF9 InChIKey         InChI                1.06  PRIDUUZUQRLXCV-UHFFFAOYSA-N                                                                                                                                                               
XF9 SMILES_CANONICAL CACTVS               3.385 "C[S](=O)(=O)c1cc(Cl)cc(COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1"                                                                                                        
XF9 SMILES           CACTVS               3.385 "C[S](=O)(=O)c1cc(Cl)cc(COC(=O)N2CC[CH]3CN(C[CH]3CC2)C(=O)c4ccc5[nH]nnc5c4)c1"                                                                                                            
XF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1cc(cc(c1)Cl)COC(=O)N2CC[C@@H]3CN(C[C@@H]3CC2)C(=O)c4ccc5c(c4)nn[nH]5"                                                                                                        
XF9 SMILES           "OpenEye OEToolkits" 2.0.7 "CS(=O)(=O)c1cc(cc(c1)Cl)COC(=O)N2CCC3CN(CC3CC2)C(=O)c4ccc5c(c4)nn[nH]5"                                                                                                                  
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XF9 "SYSTEMATIC NAME" ACDLabs              12.01 "[3-chloro-5-(methanesulfonyl)phenyl]methyl (3aR,8aS)-2-(1H-benzotriazole-5-carbonyl)octahydropyrrolo[3,4-d]azepine-6(1H)-carboxylate"                                       
XF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3-chloranyl-5-methylsulfonyl-phenyl)methyl (3~{a}~{R},8~{a}~{S})-2-(1~{H}-benzotriazol-5-ylcarbonyl)-1,3,3~{a},4,5,7,8,8~{a}-octahydropyrrolo[3,4-d]azepine-6-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XF9 "Create component" 2023-06-06 RCSB 
XF9 "Initial release"  2024-12-18 RCSB 
# 
