data_Z89
#

_chem_comp.id                                   Z89
_chem_comp.name                                 "(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1,2-dihydro-3H-indol-3-ylidene)-4-oxo-2-thioxo-1,3-thiazolidin-3-yl]butanedioic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C15 H9 Br N2 O6 S2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2010-01-24
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       457.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z89
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3LBZ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z89  C     C     C   0  1  N  N  N  -5.864   6.985  20.367  -3.392   1.720  -1.526  C     Z89   1  
Z89  N     N     N   0  1  N  N  N  -5.456   5.267  18.824  -2.141   0.093  -0.232  N     Z89   2  
Z89  O     O     O   0  1  N  N  N  -6.492   6.060  20.968  -3.983   2.907  -1.739  O     Z89   3  
Z89  CA    CA    C   0  1  N  N  R  -4.874   6.584  19.270  -2.693   1.450  -0.219  CA    Z89   4  
Z89  CB    CB    C   0  1  N  N  N  -3.477   6.554  19.925  -3.694   1.582   0.931  CB    Z89   5  
Z89  CG    CG    C   0  1  N  N  N  -2.958   7.974  20.174  -2.971   1.434   2.245  CG    Z89   6  
Z89  CAA   CAA   C   0  1  Y  N  N  -4.138  -0.232  18.950   3.158  -2.214   0.150  CAA   Z89   7  
Z89  CAB   CAB   C   0  1  Y  N  N  -4.109   1.154  19.087   2.135  -1.267   0.001  CAB   Z89   8  
Z89  CAC   CAC   C   0  1  Y  N  N  -2.992   1.817  19.622   2.440   0.087  -0.110  CAC   Z89   9  
Z89  CAD   CAD   C   0  1  Y  N  N  -1.871   1.099  20.047   3.758   0.497  -0.074  CAD   Z89  10  
Z89  BRAE  BRAE  BR  0  0  N  N  N  -0.314   1.925  20.802   4.181   2.334  -0.224  BRAE  Z89  11  
Z89  CAF   CAF   C   0  1  Y  N  N  -1.914  -0.278  19.904   4.772  -0.437   0.074  CAF   Z89  12  
Z89  CAG   CAG   C   0  1  Y  N  N  -3.025  -0.921  19.376   4.479  -1.782   0.185  CAG   Z89  13  
Z89  CAH   CAH   C   0  1  N  N  N  -5.324   1.595  18.578   0.864  -2.021   0.000  CAH   Z89  14  
Z89  CAI   CAI   C   0  1  N  N  N  -6.016   0.474  18.164   1.258  -3.436   0.158  CAI   Z89  15  
Z89  NAJ   NAJ   N   0  1  N  N  N  -5.312  -0.646  18.394   2.599  -3.485   0.234  NAJ   Z89  16  
Z89  OAK   OAK   O   0  1  N  N  N  -7.182   0.455  17.635   0.503  -4.389   0.205  OAK   Z89  17  
Z89  CAL   CAL   C   0  1  N  N  N  -5.746   2.944  18.511  -0.415  -1.513  -0.121  CAL   Z89  18  
Z89  CAM   CAM   C   0  1  N  N  N  -4.935   4.028  18.971  -0.839  -0.096  -0.090  CAM   Z89  19  
Z89  CAW   CAW   C   0  1  N  N  N  -6.700   5.092  18.273  -2.950  -0.961  -0.381  CAW   Z89  20  
Z89  SAX   SAX   S   0  1  N  N  N  -7.656   6.566  17.967  -4.650  -0.918  -0.578  SAX   Z89  21  
Z89  SAY   SAY   S   0  1  N  N  N  -7.299   3.472  17.852  -1.931  -2.410  -0.339  SAY   Z89  22  
Z89  OAZ   OAZ   O   0  1  N  N  N  -3.736   3.904  19.476  -0.054   0.821   0.054  OAZ   Z89  23  
Z89  OD1   OD1   O   0  1  N  N  N  -2.797   8.408  21.347  -3.652   1.515   3.399  OD1   Z89  24  
Z89  OD2   OD2   O   0  1  N  N  N  -2.719   8.703  19.183  -1.778   1.242   2.260  OD2   Z89  25  
Z89  OXT   OXT   O   0  1  N  N  N  -6.080   8.202  20.658  -3.425   0.867  -2.381  OXT   Z89  26  
Z89  HO    HO    H   0  1  N  N  N  -7.085   6.441  21.605  -4.422   3.032  -2.592  HO    Z89  27  
Z89  HA    HA    H   0  1  N  N  N  -4.742   7.238  18.395  -1.886   2.170  -0.083  HA    Z89  28  
Z89  HB    HB    H   0  1  N  N  N  -3.544   6.024  20.886  -4.170   2.562   0.887  HB    Z89  29  
Z89  HBA   HBA   H   0  1  N  N  N  -2.779   6.030  19.255  -4.452   0.805   0.844  HBA   Z89  30  
Z89  HAC   HAC   H   0  1  N  N  N  -3.000   2.894  19.706   1.649   0.814  -0.225  HAC   Z89  31  
Z89  HAF   HAF   H   0  1  N  N  N  -1.062  -0.866  20.211   5.800  -0.110   0.102  HAF   Z89  32  
Z89  HAG   HAG   H   0  1  N  N  N  -3.016  -1.998  19.297   5.278  -2.499   0.299  HAG   Z89  33  
Z89  HNAJ  HNAJ  H   0  0  N  N  N  -5.590  -1.586  18.199   3.112  -4.301   0.339  HNAJ  Z89  34  
Z89  HOD1  HOD1  H   0  0  N  N  N  -2.490   9.306  21.313  -3.146   1.413   4.216  HOD1  Z89  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z89  CA   C     SING  N  N   1  
Z89  C    OXT   DOUB  N  N   2  
Z89  C    O     SING  N  N   3  
Z89  CAW  N     SING  N  N   4  
Z89  N    CAM   SING  N  N   5  
Z89  N    CA    SING  N  N   6  
Z89  O    HO    SING  N  N   7  
Z89  CA   CB    SING  N  N   8  
Z89  CA   HA    SING  N  N   9  
Z89  CB   CG    SING  N  N  10  
Z89  CB   HB    SING  N  N  11  
Z89  CB   HBA   SING  N  N  12  
Z89  OD2  CG    DOUB  N  N  13  
Z89  CG   OD1   SING  N  N  14  
Z89  NAJ  CAA   SING  N  N  15  
Z89  CAA  CAB   DOUB  Y  N  16  
Z89  CAA  CAG   SING  Y  N  17  
Z89  CAH  CAB   SING  N  N  18  
Z89  CAB  CAC   SING  Y  N  19  
Z89  CAC  CAD   DOUB  Y  N  20  
Z89  CAC  HAC   SING  N  N  21  
Z89  CAF  CAD   SING  Y  N  22  
Z89  CAD  BRAE  SING  N  N  23  
Z89  CAG  CAF   DOUB  Y  N  24  
Z89  CAF  HAF   SING  N  N  25  
Z89  CAG  HAG   SING  N  N  26  
Z89  CAI  CAH   SING  N  N  27  
Z89  CAL  CAH   DOUB  N  N  28  
Z89  OAK  CAI   DOUB  N  Z  29  
Z89  CAI  NAJ   SING  N  N  30  
Z89  NAJ  HNAJ  SING  N  N  31  
Z89  SAY  CAL   SING  N  N  32  
Z89  CAL  CAM   SING  N  N  33  
Z89  CAM  OAZ   DOUB  N  N  34  
Z89  SAY  CAW   SING  N  N  35  
Z89  SAX  CAW   DOUB  N  N  36  
Z89  OD1  HOD1  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z89  SMILES_CANONICAL  CACTVS                3.352  "OC(=O)C[C@@H](N1C(=S)SC(/C1=O)=C/2C(=O)Nc3ccc(Br)cc/23)C(O)=O"  
Z89  SMILES            CACTVS                3.352  "OC(=O)C[CH](N1C(=S)SC(C1=O)=C2C(=O)Nc3ccc(Br)cc23)C(O)=O"  
Z89  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1cc2c(cc1Br)/C(=C/3\C(=O)N(C(=S)S3)[C@H](CC(=O)O)C(=O)O)/C(=O)N2"  
Z89  SMILES            "OpenEye OEToolkits"  1.7.0  "c1cc2c(cc1Br)C(=C3C(=O)N(C(=S)S3)C(CC(=O)O)C(=O)O)C(=O)N2"  
Z89  InChI             InChI                 1.03   "InChI=1S/C15H9BrN2O6S2/c16-5-1-2-7-6(3-5)10(12(21)17-7)11-13(22)18(15(25)26-11)8(14(23)24)4-9(19)20/h1-3,8H,4H2,(H,17,21)(H,19,20)(H,23,24)/b11-10-/t8-/m1/s1"  
Z89  InChIKey          InChI                 1.03   QGNRETMYLHRUBB-OZEWEUHLSA-N  
#
_pdbx_chem_comp_identifier.comp_id          Z89
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "(2R)-2-[(5Z)-5-(5-bromo-2-oxo-1H-indol-3-ylidene)-4-oxo-2-sulfanylidene-1,3-thiazolidin-3-yl]butanedioic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z89  "Create component"      2010-01-24  RCSB  
Z89  "Modify aromatic_flag"  2011-06-04  RCSB  
Z89  "Modify descriptor"     2011-06-04  RCSB  
Z89  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Z89
_pdbx_chem_comp_synonyms.name        "N-[(1S)-2-AMINO-1-(2,4-DICHLOROBENZYL)ETHYL]-5-[2-(METHYLAMINO)PYRIMIDIN-4-YL]THIOPHENE-2-CARBOXAMIDE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
