data_Z99
#

_chem_comp.id                                   Z99
_chem_comp.name                                 "2-[(1S,2S)-2-carboxycyclopropyl]-3-(9H-xanthen-9-yl)-D-alanine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C20 H19 N O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(1S,2S)-2-[(2S)-2-amino-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-12-01
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       353.369
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z99
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3KS9
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z99  NAA   NAA   N  0  1  N  N  N  -68.454  23.025  17.962  -1.213   0.315  -1.852  NAA   Z99   1  
Z99  OAB   OAB   O  0  1  N  N  N  -71.069  20.079  15.225  -4.763   1.264   1.742  OAB   Z99   2  
Z99  OAC   OAC   O  0  1  N  N  N  -66.918  19.930  18.928  -2.040  -2.033  -0.635  OAC   Z99   3  
Z99  OAD   OAD   O  0  1  N  N  N  -72.492  19.243  16.725  -6.210   0.393   0.317  OAD   Z99   4  
Z99  OAE   OAE   O  0  1  N  N  N  -66.145  21.915  18.200  -0.836  -1.467   1.130  OAE   Z99   5  
Z99  CAF   CAF   C  0  1  Y  N  N  -65.248  20.980  22.955   1.829  -3.745   0.071  CAF   Z99   6  
Z99  CAG   CAG   C  0  1  Y  N  N  -71.960  22.413  23.743   4.698   2.717   0.376  CAG   Z99   7  
Z99  CAH   CAH   C  0  1  Y  N  N  -65.099  21.959  21.963   0.810  -3.320  -0.761  CAH   Z99   8  
Z99  CAI   CAI   C  0  1  Y  N  N  -71.956  23.407  22.753   3.705   3.262  -0.435  CAI   Z99   9  
Z99  CAJ   CAJ   C  0  1  Y  N  N  -66.522  20.511  23.267   2.662  -2.821   0.669  CAJ   Z99  10  
Z99  CAK   CAK   C  0  1  Y  N  N  -70.933  21.463  23.793   4.552   1.436   0.870  CAK   Z99  11  
Z99  CAL   CAL   C  0  1  Y  N  N  -66.224  22.455  21.289   0.625  -1.970  -0.993  CAL   Z99  12  
Z99  CAM   CAM   C  0  1  Y  N  N  -70.917  23.453  21.811   2.595   2.510  -0.768  CAM   Z99  13  
Z99  CAN   CAN   C  0  1  N  N  N  -69.230  21.504  19.763   0.041   0.912   0.165  CAN   Z99  14  
Z99  CAO   CAO   C  0  1  N  N  N  -69.053  19.288  17.300  -3.235   1.902  -0.921  CAO   Z99  15  
Z99  OAP   OAP   O  0  1  N  N  N  -68.896  20.557  22.910   3.310  -0.573   1.032  OAP   Z99  16  
Z99  CAQ   CAQ   C  0  1  N  N  N  -71.401  19.730  16.392  -4.971   0.785   0.653  CAQ   Z99  17  
Z99  CAR   CAR   C  0  1  N  N  N  -67.065  21.107  18.507  -1.359  -1.134   0.093  CAR   Z99  18  
Z99  CAS   CAS   C  0  1  Y  N  N  -67.640  21.018  22.594   2.482  -1.463   0.433  CAS   Z99  19  
Z99  CAT   CAT   C  0  1  Y  N  N  -69.890  21.506  22.856   3.434   0.681   0.535  CAT   Z99  20  
Z99  CAU   CAU   C  0  1  Y  N  N  -67.493  21.990  21.593   1.456  -1.039  -0.396  CAU   Z99  21  
Z99  CAV   CAV   C  0  1  Y  N  N  -69.886  22.507  21.876   2.455   1.221  -0.286  CAV   Z99  22  
Z99  CAW   CAW   C  0  1  N  N  N  -68.766  22.513  20.858   1.235   0.425  -0.660  CAW   Z99  23  
Z99  CAX   CAX   C  0  1  N  N  S  -70.404  19.937  17.534  -3.839   0.627  -0.329  CAX   Z99  24  
Z99  CAY   CAY   C  0  1  N  N  S  -68.495  21.615  18.380  -1.245   0.291  -0.384  CAY   Z99  25  
Z99  CAZ   CAZ   C  0  1  N  N  S  -69.180  20.818  17.218  -2.450   1.093   0.113  CAZ   Z99  26  
Z99  HNAA  HNAA  H  0  0  N  N  N  -67.986  23.099  17.081  -1.229   1.262  -2.199  HNAA  Z99  27  
Z99  HNAB  HNAB  H  0  0  N  N  N  -69.387  23.374  17.874  -0.410  -0.185  -2.204  HNAB  Z99  28  
Z99  HOAC  HOAC  H  0  0  N  N  N  -65.992  19.727  18.985  -2.085  -2.934  -0.288  HOAC  Z99  29  
Z99  HOAD  HOAD  H  0  0  N  N  N  -73.052  19.169  15.962  -6.903   0.514   0.980  HOAD  Z99  30  
Z99  HAF   HAF   H  0  1  N  N  N  -64.383  20.593  23.473   1.971  -4.800   0.256  HAF   Z99  31  
Z99  HAG   HAG   H  0  1  N  N  N  -72.759  22.381  24.469   5.567   3.302   0.639  HAG   Z99  32  
Z99  HAH   HAH   H  0  1  N  N  N  -64.116  22.332  21.717   0.158  -4.042  -1.230  HAH   Z99  33  
Z99  HAI   HAI   H  0  1  N  N  N  -72.752  24.136  22.716   3.815   4.264  -0.823  HAI   Z99  34  
Z99  HAJ   HAJ   H  0  1  N  N  N  -66.647  19.756  24.029   3.455  -3.155   1.322  HAJ   Z99  35  
Z99  HAK   HAK   H  0  1  N  N  N  -70.944  20.696  24.554   5.309   1.020   1.519  HAK   Z99  36  
Z99  HAL   HAL   H  0  1  N  N  N  -66.100  23.208  20.525  -0.171  -1.640  -1.644  HAL   Z99  37  
Z99  HAM   HAM   H  0  1  N  N  N  -70.912  24.212  21.042   1.827   2.935  -1.398  HAM   Z99  38  
Z99  HAN   HAN   H  0  1  N  N  N  -70.300  21.682  19.583   0.174   0.614   1.205  HAN   Z99  39  
Z99  HANA  HANA  H  0  0  N  N  N  -69.051  20.490  20.151  -0.024   1.998   0.103  HANA  Z99  40  
Z99  HAO   HAO   H  0  1  N  N  N  -68.733  18.555  16.545  -2.892   1.864  -1.956  HAO   Z99  41  
Z99  HAOA  HAOA  H  0  0  N  N  N  -68.440  18.655  17.959  -3.656   2.855  -0.601  HAOA  Z99  42  
Z99  HAW   HAW   H  0  1  N  N  N  -68.545  23.496  20.418   1.022   0.571  -1.720  HAW   Z99  43  
Z99  HAX   HAX   H  0  1  N  N  N  -71.155  19.931  18.338  -3.894  -0.250  -0.974  HAX   Z99  44  
Z99  HAZ   HAZ   H  0  1  N  N  N  -68.976  21.604  16.476  -2.355   1.513   1.114  HAZ   Z99  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z99  NAA  CAY   SING  N  N   1  
Z99  NAA  HNAA  SING  N  N   2  
Z99  NAA  HNAB  SING  N  N   3  
Z99  OAB  CAQ   DOUB  N  N   4  
Z99  CAR  OAC   SING  N  N   5  
Z99  OAC  HOAC  SING  N  N   6  
Z99  CAQ  OAD   SING  N  N   7  
Z99  OAD  HOAD  SING  N  N   8  
Z99  OAE  CAR   DOUB  N  N   9  
Z99  CAH  CAF   DOUB  Y  N  10  
Z99  CAF  CAJ   SING  Y  N  11  
Z99  CAF  HAF   SING  N  N  12  
Z99  CAI  CAG   DOUB  Y  N  13  
Z99  CAG  CAK   SING  Y  N  14  
Z99  CAG  HAG   SING  N  N  15  
Z99  CAL  CAH   SING  Y  N  16  
Z99  CAH  HAH   SING  N  N  17  
Z99  CAM  CAI   SING  Y  N  18  
Z99  CAI  HAI   SING  N  N  19  
Z99  CAS  CAJ   DOUB  Y  N  20  
Z99  CAJ  HAJ   SING  N  N  21  
Z99  CAT  CAK   DOUB  Y  N  22  
Z99  CAK  HAK   SING  N  N  23  
Z99  CAL  CAU   DOUB  Y  N  24  
Z99  CAL  HAL   SING  N  N  25  
Z99  CAM  CAV   DOUB  Y  N  26  
Z99  CAM  HAM   SING  N  N  27  
Z99  CAY  CAN   SING  N  N  28  
Z99  CAN  CAW   SING  N  N  29  
Z99  CAN  HAN   SING  N  N  30  
Z99  CAN  HANA  SING  N  N  31  
Z99  CAZ  CAO   SING  N  N  32  
Z99  CAO  CAX   SING  N  N  33  
Z99  CAO  HAO   SING  N  N  34  
Z99  CAO  HAOA  SING  N  N  35  
Z99  CAS  OAP   SING  N  N  36  
Z99  CAT  OAP   SING  N  N  37  
Z99  CAQ  CAX   SING  N  N  38  
Z99  CAY  CAR   SING  N  N  39  
Z99  CAU  CAS   SING  Y  N  40  
Z99  CAV  CAT   SING  Y  N  41  
Z99  CAW  CAU   SING  N  N  42  
Z99  CAW  CAV   SING  N  N  43  
Z99  CAW  HAW   SING  N  N  44  
Z99  CAZ  CAX   SING  N  N  45  
Z99  CAX  HAX   SING  N  N  46  
Z99  CAZ  CAY   SING  N  N  47  
Z99  CAZ  HAZ   SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z99  SMILES_CANONICAL  CACTVS                3.352  "N[C@@](CC1c2ccccc2Oc3ccccc13)([C@H]4C[C@@H]4C(O)=O)C(O)=O"  
Z99  SMILES            CACTVS                3.352  "N[C](CC1c2ccccc2Oc3ccccc13)([CH]4C[CH]4C(O)=O)C(O)=O"  
Z99  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1ccc2c(c1)C(c3ccccc3O2)C[C@]([C@H]4C[C@@H]4C(=O)O)(C(=O)O)N"  
Z99  SMILES            "OpenEye OEToolkits"  1.7.0  "c1ccc2c(c1)C(c3ccccc3O2)CC(C4CC4C(=O)O)(C(=O)O)N"  
Z99  InChI             InChI                 1.03   "InChI=1S/C20H19NO5/c21-20(19(24)25,15-9-13(15)18(22)23)10-14-11-5-1-3-7-16(11)26-17-8-4-2-6-12(14)17/h1-8,13-15H,9-10,21H2,(H,22,23)(H,24,25)/t13-,15-,20-/m0/s1"  
Z99  InChIKey          InChI                 1.03   VLZBRVJVCCNPRJ-KPHUOKFYSA-N  
#
_pdbx_chem_comp_identifier.comp_id          Z99
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "(1S,2S)-2-[(2S)-2-azanyl-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z99  "Create component"      2009-12-01  RCSB  
Z99  "Modify aromatic_flag"  2011-06-04  RCSB  
Z99  "Modify descriptor"     2011-06-04  RCSB  
Z99  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Z99
_pdbx_chem_comp_synonyms.name        "(1S,2S)-2-[(2S)-2-amino-1-hydroxy-1-oxo-3-(9H-xanthen-9-yl)propan-2-yl]cyclopropane-1-carboxylic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
