data_D2A
#

_chem_comp.id                                   D2A
_chem_comp.name                                 "2-(4'-AMIDINOBIPHENYL-4-YL)-1H-BENZIMIDAZOLE-5-AMIDINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H18 N6"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DB921
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2005-09-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       354.408
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    D2A
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2B0K
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
D2A  C1    C1    C  0  1  Y  N  N   6.946  17.451  15.354  -5.932  -0.600  -1.002  C1    D2A   1  
D2A  C2    C2    C  0  1  Y  N  N   7.003  18.262  14.231  -4.556  -0.654  -0.983  C2    D2A   2  
D2A  C3    C3    C  0  1  Y  N  N   8.200  18.898  13.835  -3.845   0.015   0.014  C3    D2A   3  
D2A  C4    C4    C  0  1  Y  N  N   9.339  18.654  14.636  -4.528   0.744   0.988  C4    D2A   4  
D2A  C5    C5    C  0  1  Y  N  N   9.282  17.842  15.759  -5.904   0.804   0.965  C5    D2A   5  
D2A  C6    C6    C  0  1  Y  N  N   8.082  17.210  16.159  -6.615   0.134  -0.032  C6    D2A   6  
D2A  C7    C7    C  0  1  Y  N  N   8.266  19.720  12.691  -2.365  -0.048   0.038  C7    D2A   7  
D2A  C8    C8    C  0  1  Y  N  N   7.154  20.439  12.202  -1.713  -1.245  -0.261  C8    D2A   8  
D2A  C9    C9    C  0  1  Y  N  N   7.240  21.241  11.070  -0.338  -1.305  -0.239  C9    D2A   9  
D2A  C10   C10   C  0  1  Y  N  N   8.445  21.373  10.356   0.405  -0.167   0.083  C10   D2A  10  
D2A  C11   C11   C  0  1  Y  N  N   9.559  20.655  10.838  -0.248   1.031   0.383  C11   D2A  11  
D2A  C12   C12   C  0  1  Y  N  N   9.473  19.855  11.967  -1.623   1.090   0.355  C12   D2A  12  
D2A  C13   C13   C  0  1  Y  N  N   8.564  22.198   9.177   1.881  -0.231   0.108  C13   D2A  13  
D2A  N14   N14   N  0  1  Y  N  N   7.490  22.953   8.658   2.586  -1.233   0.576  N14   D2A  14  
D2A  C15   C15   C  0  1  Y  N  N   8.084  23.549   7.564   3.901  -0.969   0.444  C15   D2A  15  
D2A  C16   C16   C  0  1  Y  N  N   9.441  23.155   7.453   4.012   0.305  -0.146  C16   D2A  16  
D2A  N17   N17   N  0  1  Y  N  N   9.787  22.288   8.469   2.719   0.750  -0.349  N17   D2A  17  
D2A  C18   C18   C  0  1  Y  N  N  10.240  23.649   6.401   5.262   0.844  -0.398  C18   D2A  18  
D2A  C19   C19   C  0  1  Y  N  N   7.523  24.431   6.629   5.060  -1.683   0.773  C19   D2A  19  
D2A  C20   C20   C  0  1  Y  N  N   8.324  24.910   5.595   6.287  -1.147   0.522  C20   D2A  20  
D2A  C21   C21   C  0  1  Y  N  N   9.694  24.545   5.439   6.404   0.119  -0.064  C21   D2A  21  
D2A  C22   C22   C  0  1  N  N  N  10.477  25.047   4.382   7.743   0.688  -0.331  C22   D2A  22  
D2A  N23   N23   N  0  1  N  N  N  10.489  26.334   4.014   8.874  -0.028  -0.002  N23   D2A  23  
D2A  N24   N24   N  0  1  N  N  N  11.294  24.281   3.643   7.853   1.866  -0.878  N24   D2A  24  
D2A  C25   C25   C  0  1  N  N  N   8.020  16.386  17.300  -8.093   0.198  -0.056  C25   D2A  25  
D2A  N26   N26   N  0  1  N  N  N   6.928  16.277  18.072  -8.795  -0.463  -1.041  N26   D2A  26  
D2A  N27   N27   N  0  1  N  N  N   9.045  15.636  17.727  -8.731   0.880   0.853  N27   D2A  27  
D2A  H1    H1    H  0  1  N  N  N   5.978  16.988  15.611  -6.482  -1.119  -1.774  H1    D2A  28  
D2A  H2    H2    H  0  1  N  N  N   6.080  18.403  13.642  -4.027  -1.218  -1.737  H2    D2A  29  
D2A  H4    H4    H  0  1  N  N  N  10.307  19.113  14.375  -3.978   1.263   1.759  H4    D2A  30  
D2A  H5    H5    H  0  1  N  N  N  10.206  17.696  16.343  -6.432   1.369   1.719  H5    D2A  31  
D2A  H8    H8    H  0  1  N  N  N   6.183  20.371  12.722  -2.288  -2.125  -0.511  H8    D2A  32  
D2A  H9    H9    H  0  1  N  N  N   6.338  21.780  10.733   0.166  -2.232  -0.470  H9    D2A  33  
D2A  H11   H11   H  0  1  N  N  N  10.528  20.721  10.315   0.326   1.911   0.632  H11   D2A  34  
D2A  H12   H12   H  0  1  N  N  N  10.378  19.317  12.294  -2.128   2.016   0.586  H12   D2A  35  
D2A  H17   H17   H  0  1  N  N  N  10.186  21.398   8.169   2.456   1.597  -0.740  H17   D2A  36  
D2A  H18   H18   H  0  1  N  N  N  11.294  23.333   6.330   5.351   1.820  -0.851  H18   D2A  37  
D2A  H19   H19   H  0  1  N  N  N   6.467  24.743   6.705   4.981  -2.661   1.226  H19   D2A  38  
D2A  H20   H20   H  0  1  N  N  N   7.857  25.602   4.874   7.177  -1.703   0.778  H20   D2A  39  
D2A  H231  1H23  H  0  0  N  N  N  11.056  26.697   3.248   8.791  -0.905   0.405  H231  D2A  40  
D2A  H232  2H23  H  0  0  N  N  N  10.715  26.882   4.843   9.752   0.345  -0.177  H232  D2A  41  
D2A  H24   H24   H  0  1  N  N  N  11.100  23.452   4.204   8.731   2.239  -1.052  H24   D2A  42  
D2A  H261  1H26  H  0  0  N  N  N   6.883  15.680  18.898  -8.320  -0.970  -1.718  H261  D2A  43  
D2A  H262  2H26  H  0  0  N  N  N   6.152  16.012  17.464  -9.764  -0.424  -1.055  H262  D2A  44  
D2A  H27   H27   H  0  1  N  N  N   8.940  14.674  17.402  -9.700   0.922   0.836  H27   D2A  45  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
D2A  C1   C2    DOUB  Y  N   1  
D2A  C1   C6    SING  Y  N   2  
D2A  C1   H1    SING  N  N   3  
D2A  C2   C3    SING  Y  N   4  
D2A  C2   H2    SING  N  N   5  
D2A  C3   C4    DOUB  Y  N   6  
D2A  C3   C7    SING  Y  N   7  
D2A  C4   C5    SING  Y  N   8  
D2A  C4   H4    SING  N  N   9  
D2A  C5   C6    DOUB  Y  N  10  
D2A  C5   H5    SING  N  N  11  
D2A  C6   C25   SING  N  N  12  
D2A  C7   C8    DOUB  Y  N  13  
D2A  C7   C12   SING  Y  N  14  
D2A  C8   C9    SING  Y  N  15  
D2A  C8   H8    SING  N  N  16  
D2A  C9   C10   DOUB  Y  N  17  
D2A  C9   H9    SING  N  N  18  
D2A  C10  C11   SING  Y  N  19  
D2A  C10  C13   SING  Y  N  20  
D2A  C11  C12   DOUB  Y  N  21  
D2A  C11  H11   SING  N  N  22  
D2A  C12  H12   SING  N  N  23  
D2A  C13  N14   DOUB  Y  N  24  
D2A  C13  N17   SING  Y  N  25  
D2A  N14  C15   SING  Y  N  26  
D2A  C15  C16   DOUB  Y  N  27  
D2A  C15  C19   SING  Y  N  28  
D2A  C16  N17   SING  Y  N  29  
D2A  C16  C18   SING  Y  N  30  
D2A  N17  H17   SING  N  N  31  
D2A  C18  C21   DOUB  Y  N  32  
D2A  C18  H18   SING  N  N  33  
D2A  C19  C20   DOUB  Y  N  34  
D2A  C19  H19   SING  N  N  35  
D2A  C20  C21   SING  Y  N  36  
D2A  C20  H20   SING  N  N  37  
D2A  C21  C22   SING  N  N  38  
D2A  C22  N23   SING  N  N  39  
D2A  C22  N24   DOUB  N  E  40  
D2A  N23  H231  SING  N  N  41  
D2A  N23  H232  SING  N  N  42  
D2A  N24  H24   SING  N  N  43  
D2A  C25  N26   SING  N  N  44  
D2A  C25  N27   DOUB  N  N  45  
D2A  N26  H261  SING  N  N  46  
D2A  N26  H262  SING  N  N  47  
D2A  N27  H27   SING  N  N  48  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
D2A  SMILES            ACDLabs               10.04  "[N@H]=C(N)c1ccc(cc1)c4ccc(c3nc2ccc(cc2n3)C(=[N@H])N)cc4"  
D2A  SMILES_CANONICAL  CACTVS                3.341  "NC(=N)c1ccc(cc1)c2ccc(cc2)c3[nH]c4cc(ccc4n3)C(N)=N"  
D2A  SMILES            CACTVS                3.341  "NC(=N)c1ccc(cc1)c2ccc(cc2)c3[nH]c4cc(ccc4n3)C(N)=N"  
D2A  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "[H]/N=C(\c1ccc2c(c1)[nH]c(n2)c3ccc(cc3)c4ccc(cc4)C(=N)N)/N"  
D2A  SMILES            "OpenEye OEToolkits"  1.5.0  "[H]N=C(c1ccc2c(c1)[nH]c(n2)c3ccc(cc3)c4ccc(cc4)C(=N)N)N"  
D2A  InChI             InChI                 1.03   "InChI=1S/C21H18N6/c22-19(23)14-5-1-12(2-6-14)13-3-7-15(8-4-13)21-26-17-10-9-16(20(24)25)11-18(17)27-21/h1-11H,(H3,22,23)(H3,24,25)(H,26,27)"  
D2A  InChIKey          InChI                 1.03   MIMVUHYHAXPADM-UHFFFAOYSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
D2A  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-(4'-carbamimidoylbiphenyl-4-yl)-1H-benzimidazole-6-carboximidamide"  
D2A  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[4-(4-carbamimidoylphenyl)phenyl]-3H-benzimidazole-5-carboximidamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
D2A  "Create component"      2005-09-16  RCSB  
D2A  "Modify aromatic_flag"  2011-06-04  RCSB  
D2A  "Modify descriptor"     2011-06-04  RCSB  
D2A  "Modify synonyms"       2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     D2A
_pdbx_chem_comp_synonyms.name        DB921
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
