data_JIA
#

_chem_comp.id                                   JIA
_chem_comp.name                                 
;(2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(aminomethyl)-3-azany
l-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C19 H39 N5 O9"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        JI-20A
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-02-02
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       481.541
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    JIA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5Z8A
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JIA  C15  C1   C  0  1  N  N  N  54.518  -10.308  -23.176   4.650   2.978  -1.094  C15  JIA   1  
JIA  C16  C2   C  0  1  N  N  N  52.371   -9.071  -27.144   6.298   1.230   2.148  C16  JIA   2  
JIA  C17  C3   C  0  1  N  N  N  48.827  -10.382  -18.834  -0.415  -3.089   0.640  C17  JIA   3  
JIA  C18  C4   C  0  1  N  N  S  49.749   -9.939  -17.710  -1.501  -2.110   1.093  C18  JIA   4  
JIA  C19  C5   C  0  1  N  N  R  50.484   -8.677  -18.137  -1.344  -0.789   0.338  C19  JIA   5  
JIA  C20  C6   C  0  1  N  N  S  51.299   -8.939  -19.397   0.035  -0.194   0.632  C20  JIA   6  
JIA  C21  C7   C  0  1  N  N  R  53.411   -9.346  -23.618   4.641   1.450  -1.179  C21  JIA   7  
JIA  C22  C8   C  0  1  N  N  N  53.071   -8.113  -22.787   3.280   0.973  -1.691  C22  JIA   8  
JIA  C23  C9   C  0  1  N  N  S  50.386   -9.403  -20.521   1.120  -1.173   0.179  C23  JIA   9  
JIA  C24  C10  C  0  1  N  N  R  52.425   -9.745  -24.740   4.891   0.859   0.213  C24  JIA  10  
JIA  C06  C11  C  0  1  N  N  N  48.878   -5.937  -14.591  -5.298  -0.846  -2.071  C06  JIA  11  
JIA  C07  C12  C  0  1  N  N  R  50.910   -9.017  -22.855   3.435  -1.063  -0.433  C07  JIA  12  
JIA  C08  C13  C  0  1  N  N  R  49.627  -10.654  -20.099   0.963  -2.494   0.934  C08  JIA  13  
JIA  C09  C14  C  0  1  N  N  R  51.534   -6.888  -16.952  -2.708   1.100  -0.223  C09  JIA  14  
JIA  C10  C15  C  0  1  N  N  R  52.775   -6.575  -16.120  -3.585   2.179   0.417  C10  JIA  15  
JIA  C11  C16  C  0  1  N  N  R  52.552   -6.903  -14.660  -4.882   1.540   0.921  C11  JIA  16  
JIA  C12  C17  C  0  1  N  N  R  51.064   -9.934  -24.082   4.803  -0.668   0.130  C12  JIA  17  
JIA  C13  C18  C  0  1  N  N  S  51.308   -6.162  -14.209  -5.582   0.841  -0.249  C13  JIA  18  
JIA  C14  C19  C  0  1  N  N  R  50.150   -6.622  -15.075  -4.628  -0.186  -0.864  C14  JIA  19  
JIA  N01  N1   N  0  1  N  N  N  53.892   -7.333  -16.607  -2.868   2.789   1.546  N01  JIA  20  
JIA  N02  N2   N  0  1  N  N  N  48.890   -4.545  -14.958  -4.432  -1.914  -2.588  N02  JIA  21  
JIA  N03  N3   N  0  1  N  N  N  48.964   -9.660  -16.539  -2.824  -2.682   0.810  N03  JIA  22  
JIA  N04  N4   N  0  1  N  N  N  48.715  -11.016  -21.148   2.005  -3.434   0.499  N04  JIA  23  
JIA  N05  N5   N  0  1  N  N  N  52.190   -8.745  -25.754   6.227   1.250   0.681  N05  JIA  24  
JIA  O25  O1   O  0  1  N  N  N  51.014   -6.451  -12.873  -6.757   0.179   0.223  O25  JIA  25  
JIA  O26  O2   O  0  1  N  N  N  53.668   -6.460  -13.945  -5.738   2.552   1.455  O26  JIA  26  
JIA  O27  O3   O  0  1  N  N  N  50.914  -11.279  -23.722   4.962  -1.227   1.435  O27  JIA  27  
JIA  O28  O4   O  0  1  N  N  N  51.179   -9.673  -21.644   2.408  -0.617   0.454  O28  JIA  28  
JIA  O29  O5   O  0  1  N  N  N  51.705   -7.861  -23.002   3.255  -0.455  -1.714  O29  JIA  29  
JIA  O30  O6   O  0  1  N  N  N  50.394   -6.264  -16.410  -3.429   0.470  -1.283  O30  JIA  30  
JIA  O31  O7   O  0  1  N  N  N  51.922   -7.759  -19.819   0.182   1.040  -0.073  O31  JIA  31  
JIA  O32  O8   O  0  1  N  N  N  51.332   -8.266  -17.105  -2.357   0.125   0.761  O32  JIA  32  
JIA  O33  O9   O  0  1  N  N  N  54.392   -8.643  -24.340   5.667   1.016  -2.074  O33  JIA  33  
JIA  H1   H1   H  0  1  N  N  N  55.109   -9.844  -22.373   3.868   3.308  -0.409  H1   JIA  34  
JIA  H2   H2   H  0  1  N  N  N  54.067  -11.241  -22.807   5.619   3.316  -0.729  H2   JIA  35  
JIA  H3   H3   H  0  1  N  N  N  55.173  -10.531  -24.031   4.467   3.397  -2.083  H3   JIA  36  
JIA  H4   H4   H  0  1  N  N  N  52.147   -8.188  -27.760   5.567   1.927   2.556  H4   JIA  37  
JIA  H5   H5   H  0  1  N  N  N  53.412   -9.382  -27.315   6.082   0.224   2.508  H5   JIA  38  
JIA  H6   H6   H  0  1  N  N  N  51.693   -9.892  -27.419   7.298   1.523   2.467  H6   JIA  39  
JIA  H7   H7   H  0  1  N  N  N  48.092   -9.589  -19.034  -0.528  -4.030   1.178  H7   JIA  40  
JIA  H8   H8   H  0  1  N  N  N  48.303  -11.301  -18.532  -0.512  -3.269  -0.431  H8   JIA  41  
JIA  H9   H9   H  0  1  N  N  N  50.480  -10.734  -17.503  -1.404  -1.931   2.163  H9   JIA  42  
JIA  H10  H10  H  0  1  N  N  N  49.742   -7.895  -18.356  -1.440  -0.969  -0.733  H10  JIA  43  
JIA  H11  H11  H  0  1  N  N  N  52.043   -9.723  -19.189   0.132  -0.014   1.703  H11  JIA  44  
JIA  H12  H12  H  0  1  N  N  N  53.260   -8.307  -21.721   2.494   1.340  -1.030  H12  JIA  45  
JIA  H13  H13  H  0  1  N  N  N  53.674   -7.253  -23.115   3.116   1.356  -2.698  H13  JIA  46  
JIA  H14  H14  H  0  1  N  N  N  49.661   -8.606  -20.743   1.023  -1.352  -0.891  H14  JIA  47  
JIA  H15  H15  H  0  1  N  N  N  52.752  -10.692  -25.193   4.137   1.230   0.907  H15  JIA  48  
JIA  H16  H16  H  0  1  N  N  N  48.006   -6.426  -15.049  -6.256  -1.269  -1.769  H16  JIA  49  
JIA  H17  H17  H  0  1  N  N  N  48.813   -6.023  -13.496  -5.459  -0.100  -2.850  H17  JIA  50  
JIA  H18  H18  H  0  1  N  N  N  49.857   -8.700  -22.839   3.383  -2.147  -0.534  H18  JIA  51  
JIA  H19  H19  H  0  1  N  N  N  50.342  -11.468  -19.911   1.060  -2.314   2.005  H19  JIA  52  
JIA  H20  H20  H  0  1  N  N  N  51.712   -6.459  -17.949  -1.802   1.557  -0.622  H20  JIA  53  
JIA  H21  H21  H  0  1  N  N  N  52.991   -5.500  -16.209  -3.819   2.945  -0.322  H21  JIA  54  
JIA  H22  H22  H  0  1  N  N  N  52.402   -7.986  -14.541  -4.652   0.809   1.696  H22  JIA  55  
JIA  H23  H23  H  0  1  N  N  N  50.290   -9.656  -24.812   5.589  -1.043  -0.525  H23  JIA  56  
JIA  H24  H24  H  0  1  N  N  N  51.459   -5.082  -14.352  -5.858   1.580  -1.002  H24  JIA  57  
JIA  H25  H25  H  0  1  N  N  N  50.034   -7.711  -14.976  -4.386  -0.947  -0.122  H25  JIA  58  
JIA  H26  H26  H  0  1  N  N  N  54.702   -7.124  -16.059  -2.005   3.213   1.239  H26  JIA  59  
JIA  H27  H27  H  0  1  N  N  N  53.687   -8.309  -16.540  -3.450   3.459   2.025  H27  JIA  60  
JIA  H29  H29  H  0  1  N  N  N  48.051   -4.107  -14.635  -4.853  -2.366  -3.387  H29  JIA  61  
JIA  H30  H30  H  0  1  N  N  N  49.681   -4.097  -14.541  -3.516  -1.559  -2.815  H30  JIA  62  
JIA  H32  H32  H  0  1  N  N  N  49.566   -9.368  -15.796  -2.916  -3.601   1.216  H32  JIA  63  
JIA  H33  H33  H  0  1  N  N  N  48.309   -8.933  -16.743  -3.559  -2.069   1.132  H33  JIA  64  
JIA  H35  H35  H  0  1  N  N  N  48.210  -11.837  -20.883   1.923  -4.315   0.984  H35  JIA  65  
JIA  H36  H36  H  0  1  N  N  N  48.073  -10.266  -21.305   1.977  -3.567  -0.500  H36  JIA  66  
JIA  H38  H38  H  0  1  N  N  N  52.805   -7.982  -25.554   6.487   2.155   0.318  H38  JIA  67  
JIA  H40  H40  H  0  1  N  N  N  51.733   -6.167  -12.321  -7.405   0.771   0.631  H40  JIA  68  
JIA  H41  H41  H  0  1  N  N  N  53.552   -6.655  -13.023  -6.580   2.217   1.793  H41  JIA  69  
JIA  H42  H42  H  0  1  N  N  N  50.067  -11.405  -23.311   4.917  -2.193   1.457  H42  JIA  70  
JIA  H43  H43  H  0  1  N  N  N  52.501   -7.444  -19.135   0.989   1.524   0.146  H43  JIA  71  
JIA  H44  H44  H  0  1  N  N  N  55.068   -8.341  -23.745   5.570   1.352  -2.975  H44  JIA  72  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JIA  C16  N05  SING  N  N   1  
JIA  N05  C24  SING  N  N   2  
JIA  C24  C12  SING  N  N   3  
JIA  C24  C21  SING  N  N   4  
JIA  O33  C21  SING  N  N   5  
JIA  C12  O27  SING  N  N   6  
JIA  C12  C07  SING  N  N   7  
JIA  C21  C15  SING  N  N   8  
JIA  C21  C22  SING  N  N   9  
JIA  O29  C07  SING  N  N  10  
JIA  O29  C22  SING  N  N  11  
JIA  C07  O28  SING  N  N  12  
JIA  O28  C23  SING  N  N  13  
JIA  N04  C08  SING  N  N  14  
JIA  C23  C08  SING  N  N  15  
JIA  C23  C20  SING  N  N  16  
JIA  C08  C17  SING  N  N  17  
JIA  O31  C20  SING  N  N  18  
JIA  C20  C19  SING  N  N  19  
JIA  C17  C18  SING  N  N  20  
JIA  C19  C18  SING  N  N  21  
JIA  C19  O32  SING  N  N  22  
JIA  C18  N03  SING  N  N  23  
JIA  O32  C09  SING  N  N  24  
JIA  C09  O30  SING  N  N  25  
JIA  C09  C10  SING  N  N  26  
JIA  N01  C10  SING  N  N  27  
JIA  O30  C14  SING  N  N  28  
JIA  C10  C11  SING  N  N  29  
JIA  C14  C06  SING  N  N  30  
JIA  C14  C13  SING  N  N  31  
JIA  N02  C06  SING  N  N  32  
JIA  C11  C13  SING  N  N  33  
JIA  C11  O26  SING  N  N  34  
JIA  C13  O25  SING  N  N  35  
JIA  C15  H1   SING  N  N  36  
JIA  C15  H2   SING  N  N  37  
JIA  C15  H3   SING  N  N  38  
JIA  C16  H4   SING  N  N  39  
JIA  C16  H5   SING  N  N  40  
JIA  C16  H6   SING  N  N  41  
JIA  C17  H7   SING  N  N  42  
JIA  C17  H8   SING  N  N  43  
JIA  C18  H9   SING  N  N  44  
JIA  C19  H10  SING  N  N  45  
JIA  C20  H11  SING  N  N  46  
JIA  C22  H12  SING  N  N  47  
JIA  C22  H13  SING  N  N  48  
JIA  C23  H14  SING  N  N  49  
JIA  C24  H15  SING  N  N  50  
JIA  C06  H16  SING  N  N  51  
JIA  C06  H17  SING  N  N  52  
JIA  C07  H18  SING  N  N  53  
JIA  C08  H19  SING  N  N  54  
JIA  C09  H20  SING  N  N  55  
JIA  C10  H21  SING  N  N  56  
JIA  C11  H22  SING  N  N  57  
JIA  C12  H23  SING  N  N  58  
JIA  C13  H24  SING  N  N  59  
JIA  C14  H25  SING  N  N  60  
JIA  N01  H26  SING  N  N  61  
JIA  N01  H27  SING  N  N  62  
JIA  N02  H29  SING  N  N  63  
JIA  N02  H30  SING  N  N  64  
JIA  N03  H32  SING  N  N  65  
JIA  N03  H33  SING  N  N  66  
JIA  N04  H35  SING  N  N  67  
JIA  N04  H36  SING  N  N  68  
JIA  N05  H38  SING  N  N  69  
JIA  O25  H40  SING  N  N  70  
JIA  O26  H41  SING  N  N  71  
JIA  O27  H42  SING  N  N  72  
JIA  O31  H43  SING  N  N  73  
JIA  O33  H44  SING  N  N  74  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JIA  InChI             InChI                 1.03   "InChI=1S/C19H39N5O9/c1-19(29)5-30-18(13(28)16(19)24-2)33-15-7(22)3-6(21)14(12(15)27)32-17-9(23)11(26)10(25)8(4-20)31-17/h6-18,24-29H,3-5,20-23H2,1-2H3/t6-,7+,8+,9+,10+,11+,12-,13+,14+,15-,16+,17+,18+,19-/m0/s1"  
JIA  InChIKey          InChI                 1.03   YQGZDAPJXRYYLX-ZFAMMYHGSA-N  
JIA  SMILES_CANONICAL  CACTVS                3.385  "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](N)C[C@H](N)[C@@H](O[C@H]3O[C@H](CN)[C@@H](O)[C@H](O)[C@H]3N)[C@@H]2O"  
JIA  SMILES            CACTVS                3.385  "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](N)C[CH](N)[CH](O[CH]3O[CH](CN)[CH](O)[CH](O)[CH]3N)[CH]2O"  
JIA  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@]1(CO[C@@H]([C@@H]([C@H]1NC)O)O[C@H]2[C@@H](C[C@@H]([C@H]([C@@H]2O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CN)O)O)N)N)N)O"  
JIA  SMILES            "OpenEye OEToolkits"  2.0.6  "CC1(COC(C(C1NC)O)OC2C(CC(C(C2O)OC3C(C(C(C(O3)CN)O)O)N)N)N)O"  
#
_pdbx_chem_comp_identifier.comp_id          JIA
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "(2~{R},3~{R},4~{R},5~{R})-2-[(1~{S},2~{S},3~{R},4~{S},6~{R})-3-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(aminomethyl)-3-azanyl-4,5-bis(oxidanyl)oxan-2-yl]oxy-4,6-bis(azanyl)-2-oxidanyl-cyclohexyl]oxy-5-methyl-4-(methylamino)oxane-3,5-diol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JIA  "Create component"               2018-02-02  RCSB  
JIA  "Modify model coordinates code"  2018-02-21  RCSB  
JIA  "Initial release"                2019-01-16  RCSB  
JIA  "Modify synonyms"                2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     JIA
_pdbx_chem_comp_synonyms.name        JI-20A
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
