data_KAA
#

_chem_comp.id                                   KAA
_chem_comp.name                                 "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H26 N8 O7 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2007-04-13
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  ?
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       474.492
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KAA
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       "OpenEye OEToolkits"
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KAA  NZ      NZ    N  0  1  N  N  N  -3.724  -4.239    3.276  -2.763   5.667   7.546  NZ      KAA   1  
KAA  CE      CE    C  0  1  N  N  N  -3.159  -2.883    3.259  -2.073   5.375   6.295  CE      KAA   2  
KAA  CD      CD    C  0  1  N  N  N  -2.290  -2.697    2.013  -2.331   6.483   5.276  CD      KAA   3  
KAA  CG      CG    C  0  1  N  N  N  -3.098  -2.876    0.726  -1.607   6.200   3.957  CG      KAA   4  
KAA  CB      CB    C  0  1  N  N  N  -2.250  -2.479   -0.483  -1.894   7.292   2.919  CB      KAA   5  
KAA  CA      CA    C  0  1  N  N  S  -3.041  -2.578   -1.789  -1.158   7.045   1.596  CA      KAA   6  
KAA  N       N     N  0  1  N  N  N  -3.267  -3.991   -2.128  -1.479   8.090   0.623  N       KAA   7  
KAA  C       C     C  0  1  N  N  N  -2.245  -1.886   -2.897  -1.585   5.728   0.969  C       KAA   8  
KAA  O       O     O  0  1  N  N  N  -1.777  -2.552   -3.819  -2.688   5.224   1.155  O       KAA   9  
KAA  N8      N8    N  0  1  N  N  N  -2.092  -0.569   -2.796  -0.585   5.136   0.130  N8      KAA  10  
KAA  S1      S1    S  0  1  N  N  N  -1.309   0.080   -4.070  -0.781   3.654  -0.709  S1      KAA  11  
KAA  O1S     O1S   O  0  1  N  N  N  -2.027  -0.245   -5.345   0.127   3.669  -1.841  O1S     KAA  12  
KAA  O2S     O2S   O  0  1  N  N  N  -1.265   1.570   -3.901  -2.201   3.432  -0.913  O2S     KAA  13  
KAA  "O5'"   O5*   O  0  1  N  N  N   0.027  -0.433   -4.155  -0.238   2.541   0.360  "O5'"   KAA  14  
KAA  "C5'"   C5*   C  0  1  N  N  N   1.008  -0.096   -3.169  -0.881   2.428   1.621  "C5'"   KAA  15  
KAA  "C4'"   C4*   C  0  1  N  N  R   2.278   0.470   -3.810  -0.199   1.333   2.429  "C4'"   KAA  16  
KAA  "O4'"   O4*   O  0  1  N  N  N   2.742  -0.370   -4.875   1.179   1.716   2.644  "O4'"   KAA  17  
KAA  "C3'"   C3*   C  0  1  N  N  S   2.029   1.803   -4.516  -0.816   1.144   3.811  "C3'"   KAA  18  
KAA  "O3'"   O3*   O  0  1  N  N  N   1.994   2.843   -3.535  -0.579  -0.197   4.241  "O3'"   KAA  19  
KAA  "C2'"   C2*   C  0  1  N  N  R   3.320   1.904   -5.330  -0.001   2.098   4.662  "C2'"   KAA  20  
KAA  "O2'"   O2*   O  0  1  N  N  N   4.402   2.394   -4.531  -0.013   1.764   6.035  "O2'"   KAA  21  
KAA  "C1'"   C1*   C  0  1  N  N  R   3.591   0.443   -5.704   1.384   1.940   4.052  "C1'"   KAA  22  
KAA  N9      N9    N  0  1  Y  N  N   3.208   0.163   -7.104   2.255   3.097   4.246  N9      KAA  23  
KAA  C8      C8    C  0  1  Y  N  N   1.973  -0.065   -7.545   2.314   4.207   3.444  C8      KAA  24  
KAA  N7      N7    N  0  1  Y  N  N   2.011  -0.308   -8.853   3.197   5.084   3.873  N7      KAA  25  
KAA  C5      C5    C  0  1  Y  N  N   3.279  -0.236   -9.248   3.736   4.519   5.001  C5      KAA  26  
KAA  C4      C4    C  0  1  Y  N  N   4.044   0.070   -8.133   3.163   3.282   5.251  C4      KAA  27  
KAA  N3      N3    N  0  1  Y  N  N   5.371   0.211   -8.261   3.443   2.448   6.263  N3      KAA  28  
KAA  C2      C2    C  0  1  Y  N  N   5.950   0.060   -9.439   4.398   2.975   7.060  C2      KAA  29  
KAA  N1      N1    N  0  1  Y  N  N   5.255  -0.237  -10.522   5.043   4.161   6.942  N1      KAA  30  
KAA  C6      C6    C  0  1  Y  N  N   3.925  -0.395  -10.468   4.710   4.953   5.894  C6      KAA  31  
KAA  N6      N6    N  0  1  N  N  N   3.239  -0.712  -11.563   5.344   6.195   5.717  N6      KAA  32  
KAA  HNZ1    1HNZ  H  0  0  N  N  N  -3.852  -4.559    2.337  -2.477   5.178   8.367  HNZ1    KAA  33  
KAA  HNZ2    2HNZ  H  0  0  N  N  N  -3.098  -4.855    3.755  -3.616   6.183   7.504  HNZ2    KAA  34  
KAA  HE1     1HE   H  0  1  N  N  N  -3.977  -2.148    3.246  -2.429   4.415   5.907  HE1     KAA  35  
KAA  HE2     2HE   H  0  1  N  N  N  -2.541  -2.736    4.157  -0.998   5.280   6.487  HE2     KAA  36  
KAA  HD1     1HD   H  0  1  N  N  N  -1.867  -1.682    2.026  -1.992   7.446   5.678  HD1     KAA  37  
KAA  HD2     2HD   H  0  1  N  N  N  -1.497  -3.460    2.030  -3.409   6.572   5.089  HD2     KAA  38  
KAA  HG1     1HG   H  0  1  N  N  N  -3.399  -3.930    0.629  -0.529   6.136   4.144  HG1     KAA  39  
KAA  HG2     2HG   H  0  1  N  N  N  -3.991  -2.235    0.768  -1.927   5.228   3.564  HG2     KAA  40  
KAA  HB1     1HB   H  0  1  N  N  N  -1.914  -1.440   -0.352  -2.975   7.325   2.732  HB1     KAA  41  
KAA  HB2     2HB   H  0  1  N  N  N  -1.397  -3.170   -0.545  -1.613   8.267   3.337  HB2     KAA  42  
KAA  HA      HA    H  0  1  N  N  N  -4.019  -2.087   -1.677  -0.074   7.054   1.759  HA      KAA  43  
KAA  HN1     1HN   H  0  1  N  N  N  -3.318  -4.092   -3.122  -2.437   8.330   0.497  HN1     KAA  44  
KAA  HN2     2HN   H  0  1  N  N  N  -2.511  -4.543   -1.776  -0.766   8.370  -0.012  HN2     KAA  45  
KAA  HN8     HN8   H  0  1  N  N  N  -2.423  -0.033   -2.020   0.308   5.633   0.024  HN8     KAA  46  
KAA  "H5'1"  1H5*  H  0  0  N  N  N   0.585   0.661   -2.493  -0.810   3.389   2.140  "H5'1"  KAA  47  
KAA  "H5'2"  2H5*  H  0  0  N  N  N   1.276  -1.011   -2.621  -1.935   2.186   1.458  "H5'2"  KAA  48  
KAA  "H4'"   H4*   H  0  1  N  N  N   2.988   0.559   -2.975  -0.198   0.404   1.850  "H4'"   KAA  49  
KAA  "H3'"   H3*   H  0  1  N  N  N   1.099   1.877   -5.099  -1.893   1.322   3.856  "H3'"   KAA  50  
KAA  "HO3'"  HO3*  H  0  0  N  N  N   1.986   2.459   -2.666  -0.576  -0.744   3.441  "HO3'"  KAA  51  
KAA  "H2'"   H2*   H  0  1  N  N  N   3.230   2.589   -6.186  -0.369   3.124   4.543  "H2'"   KAA  52  
KAA  "HO2'"  HO2*  H  0  0  N  N  N   5.174   2.503   -5.074   0.470   2.465   6.507  "HO2'"  KAA  53  
KAA  "H1'"   H1*   H  0  1  N  N  N   4.663   0.235   -5.572   1.934   1.090   4.471  "H1'"   KAA  54  
KAA  H8      H8    H  0  1  N  N  N   1.080  -0.054   -6.937   1.691   4.319   2.567  H8      KAA  55  
KAA  H2      H2    H  0  1  N  N  N   7.020   0.183   -9.518   4.690   2.366   7.909  H2      KAA  56  
KAA  HN61    1HN6  H  0  0  N  N  N   2.268  -0.794  -11.337   5.438   6.573   4.794  HN61    KAA  57  
KAA  HN62    2HN6  H  0  0  N  N  N   3.633  -0.847  -12.472   5.777   6.643   6.502  HN62    KAA  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KAA  NZ     CE      SING  N  N   1  
KAA  NZ     HNZ1    SING  N  N   2  
KAA  NZ     HNZ2    SING  N  N   3  
KAA  CE     CD      SING  N  N   4  
KAA  CE     HE1     SING  N  N   5  
KAA  CE     HE2     SING  N  N   6  
KAA  CD     CG      SING  N  N   7  
KAA  CD     HD1     SING  N  N   8  
KAA  CD     HD2     SING  N  N   9  
KAA  CG     CB      SING  N  N  10  
KAA  CG     HG1     SING  N  N  11  
KAA  CG     HG2     SING  N  N  12  
KAA  CB     CA      SING  N  N  13  
KAA  CB     HB1     SING  N  N  14  
KAA  CB     HB2     SING  N  N  15  
KAA  CA     C       SING  N  N  16  
KAA  CA     N       SING  N  N  17  
KAA  CA     HA      SING  N  N  18  
KAA  N      HN1     SING  N  N  19  
KAA  N      HN2     SING  N  N  20  
KAA  C      O       DOUB  N  N  21  
KAA  C      N8      SING  N  N  22  
KAA  N8     S1      SING  N  N  23  
KAA  N8     HN8     SING  N  N  24  
KAA  S1     O1S     DOUB  N  N  25  
KAA  S1     "O5'"   SING  N  N  26  
KAA  S1     O2S     DOUB  N  N  27  
KAA  "O5'"  "C5'"   SING  N  N  28  
KAA  "C5'"  "C4'"   SING  N  N  29  
KAA  "C5'"  "H5'1"  SING  N  N  30  
KAA  "C5'"  "H5'2"  SING  N  N  31  
KAA  "C4'"  "O4'"   SING  N  N  32  
KAA  "C4'"  "C3'"   SING  N  N  33  
KAA  "C4'"  "H4'"   SING  N  N  34  
KAA  "O4'"  "C1'"   SING  N  N  35  
KAA  "C3'"  "C2'"   SING  N  N  36  
KAA  "C3'"  "O3'"   SING  N  N  37  
KAA  "C3'"  "H3'"   SING  N  N  38  
KAA  "O3'"  "HO3'"  SING  N  N  39  
KAA  "C2'"  "C1'"   SING  N  N  40  
KAA  "C2'"  "O2'"   SING  N  N  41  
KAA  "C2'"  "H2'"   SING  N  N  42  
KAA  "O2'"  "HO2'"  SING  N  N  43  
KAA  "C1'"  N9      SING  N  N  44  
KAA  "C1'"  "H1'"   SING  N  N  45  
KAA  N9     C4      SING  Y  N  46  
KAA  N9     C8      SING  Y  N  47  
KAA  C8     N7      DOUB  Y  N  48  
KAA  C8     H8      SING  N  N  49  
KAA  N7     C5      SING  Y  N  50  
KAA  C5     C6      SING  Y  N  51  
KAA  C5     C4      DOUB  Y  N  52  
KAA  C4     N3      SING  Y  N  53  
KAA  N3     C2      DOUB  Y  N  54  
KAA  C2     N1      SING  Y  N  55  
KAA  C2     H2      SING  N  N  56  
KAA  N1     C6      DOUB  Y  N  57  
KAA  C6     N6      SING  N  N  58  
KAA  N6     HN61    SING  N  N  59  
KAA  N6     HN62    SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KAA  SMILES            ACDLabs               10.04  "O=C(NS(=O)(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C(N)CCCCN"  
KAA  SMILES_CANONICAL  CACTVS                3.341  "NCCCC[C@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23"  
KAA  SMILES            CACTVS                3.341  "NCCCC[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23"  
KAA  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)NC(=O)[C@H](CCCCN)N)O)O)N"  
KAA  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COS(=O)(=O)NC(=O)C(CCCCN)N)O)O)N"  
KAA  InChI             InChI                 1.03   "InChI=1S/C16H26N8O7S/c17-4-2-1-3-8(18)15(27)23-32(28,29)30-5-9-11(25)12(26)16(31-9)24-7-22-10-13(19)20-6-21-14(10)24/h6-9,11-12,16,25-26H,1-5,17-18H2,(H,23,27)(H2,19,20,21)/t8-,9+,11+,12+,16+/m0/s1"  
KAA  InChIKey          InChI                 1.03   NARKTLKJPPMFJF-LEJQEAHTSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KAA  "SYSTEMATIC NAME"  ACDLabs               10.04  "5'-O-(L-lysylsulfamoyl)adenosine"  
KAA  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl N-[(2S)-2,6-diaminohexanoyl]sulfamate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KAA  "Create component"   2007-04-13  RCSB  
KAA  "Modify descriptor"  2011-06-04  RCSB  
KAA  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     KAA
_pdbx_chem_comp_synonyms.name        "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
