data_62B
# 
_chem_comp.id                                    62B 
_chem_comp.name                                  Lefamulin 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C28 H45 N O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-01-15 
_chem_comp.pdbx_modified_date                    2016-12-16 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        507.726 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     62B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5HL7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
62B C10  C10  C 0 1 N N R 17.580 -81.693 -4.195 3.798  0.860  0.790  C10  62B 1  
62B C11  C11  C 0 1 N N S 16.023 -81.356 -4.286 3.722  1.704  -0.454 C11  62B 2  
62B C12  C12  C 0 1 N N S 15.528 -79.965 -3.786 2.373  2.102  -0.895 C12  62B 3  
62B C13  C13  C 0 1 N N N 15.692 -79.663 -2.332 1.557  0.860  -1.318 C13  62B 4  
62B C14  C14  C 0 1 N N R 17.138 -79.413 -1.946 1.272  -0.123 -0.169 C14  62B 5  
62B C15  C15  C 0 1 N N N 16.829 -80.195 0.280  1.645  -2.267 -1.094 C15  62B 6  
62B C16  C16  C 0 1 N N N 19.742 -79.323 -0.018 0.826  -2.174 1.765  C16  62B 7  
62B C17  C17  C 0 1 N N N 17.983 -82.600 -5.353 4.572  1.651  1.865  C17  62B 8  
62B C18  C18  C 0 1 N N N 14.080 -79.608 -4.144 2.524  3.024  -2.121 C18  62B 9  
62B C19  C19  C 0 1 N N N 16.448 -78.901 -4.335 1.661  2.876  0.183  C19  62B 10 
62B C20  C20  C 0 1 N N N 17.100 -78.886 -5.467 1.263  4.102  -0.047 C20  62B 11 
62B C21  C21  C 0 1 N N N 17.823 -77.150 -1.736 -1.110 -0.042 0.062  C21  62B 12 
62B C22  C22  C 0 1 N N N 17.543 -75.884 -0.981 -2.502 -0.565 -0.185 C22  62B 13 
62B C23  C23  C 0 1 N N R 16.481 -73.600 -2.269 -5.295 -0.261 0.226  C23  62B 14 
62B C24  C24  C 0 1 N N N 15.970 -74.295 -3.540 -5.529 -0.189 -1.284 C24  62B 15 
62B C25  C25  C 0 1 N N N 14.877 -73.560 -4.316 -6.868 -0.846 -1.625 C25  62B 16 
62B C26  C26  C 0 1 N N R 15.547 -72.223 -4.689 -7.996 -0.112 -0.898 C26  62B 17 
62B C27  C27  C 0 1 N N N 15.817 -71.453 -3.389 -7.762 -0.184 0.612  C27  62B 18 
62B C28  C28  C 0 1 N N R 16.863 -72.146 -2.526 -6.423 0.473  0.953  C28  62B 19 
62B C1   C1   C 0 1 N N N 18.004 -83.845 -2.941 5.880  -0.341 -0.249 C1   62B 20 
62B C2   C2   C 0 1 N N N 17.157 -84.273 -1.783 5.942  -1.719 -0.964 C2   62B 21 
62B C3   C3   C 0 1 N N N 17.263 -83.155 -0.800 4.493  -2.184 -1.132 C3   62B 22 
62B C4   C4   C 0 1 N N R 17.297 -81.894 -1.634 3.632  -1.080 -0.621 C4   62B 23 
62B C5   C5   C 0 1 N N R 17.646 -80.524 -0.981 2.273  -1.276 -0.099 C5   62B 24 
62B C6   C6   C 0 1 N N R 19.173 -80.563 -0.684 2.236  -2.071 1.193  C6   62B 25 
62B C7   C7   C 0 1 N N N 19.915 -80.820 -1.987 3.172  -1.483 2.249  C7   62B 26 
62B C8   C8   C 0 1 N N N 19.582 -82.179 -2.571 4.584  -1.350 1.674  C8   62B 27 
62B C9   C9   C 0 1 N N S 18.084 -82.311 -2.859 4.556  -0.406 0.481  C9   62B 28 
62B N1   N1   N 0 1 N N N 14.749 -71.449 -5.652 -9.282 -0.743 -1.225 N1   62B 29 
62B O1   O1   O 0 1 N N N 17.358 -83.273 0.394  4.166  -3.251 -1.594 O1   62B 30 
62B O2   O2   O 0 1 N N N 15.566 -81.587 -5.620 4.474  2.907  -0.218 O2   62B 31 
62B O3   O3   O 0 1 N N N 17.129 -78.166 -1.212 -0.050 -0.688 -0.449 O3   62B 32 
62B O4   O4   O 0 1 N N N 18.569 -77.257 -2.671 -0.948 0.958  0.720  O4   62B 33 
62B O5   O5   O 0 1 N N N 16.986 -71.478 -1.266 -6.205 0.405  2.363  O5   62B 34 
62B S1   S1   S 0 1 N N N 18.073 -74.377 -1.828 -3.707 0.518  0.630  S1   62B 35 
62B H10  H10  H 0 1 N N N 18.113 -80.740 -4.327 2.814  0.632  1.181  H10  62B 36 
62B H11  H11  H 0 1 N N N 15.528 -82.097 -3.641 4.214  1.185  -1.279 H11  62B 37 
62B H13  H13  H 0 1 N N N 15.103 -78.766 -2.090 0.590  1.199  -1.719 H13  62B 38 
62B H13A H13A H 0 0 N N N 15.315 -80.517 -1.750 2.073  0.340  -2.126 H13A 62B 39 
62B H14  H14  H 0 1 N N N 17.779 -79.360 -2.839 1.215  0.390  0.778  H14  62B 40 
62B H15  H15  H 0 1 N N N 17.080 -80.910 1.077  1.583  -1.803 -2.078 H15  62B 41 
62B H15A H15A H 0 0 N N N 17.067 -79.175 0.615  2.263  -3.163 -1.153 H15A 62B 42 
62B H15B H15B H 0 0 N N N 15.756 -80.265 0.050  0.645  -2.537 -0.756 H15B 62B 43 
62B H16  H16  H 0 1 N N N 20.822 -79.456 0.145  0.176  -2.670 1.044  H16  62B 44 
62B H16A H16A H 0 0 N N N 19.574 -78.450 -0.665 0.850  -2.751 2.690  H16A 62B 45 
62B H16B H16B H 0 0 N N N 19.242 -79.164 0.949  0.443  -1.174 1.972  H16B 62B 46 
62B H17  H17  H 0 1 N N N 19.057 -82.828 -5.284 4.049  2.583  2.078  H17  62B 47 
62B H17A H17A H 0 0 N N N 17.406 -83.535 -5.304 4.638  1.056  2.776  H17A 62B 48 
62B H17B H17B H 0 0 N N N 17.777 -82.091 -6.306 5.575  1.872  1.502  H17B 62B 49 
62B H18  H18  H 0 1 N N N 13.838 -78.612 -3.745 3.127  2.524  -2.880 H18  62B 50 
62B H18A H18A H 0 0 N N N 13.964 -79.603 -5.238 1.539  3.249  -2.530 H18A 62B 51 
62B H18B H18B H 0 0 N N N 13.400 -80.354 -3.707 3.013  3.951  -1.821 H18B 62B 52 
62B H19  H19  H 0 1 N N N 16.586 -78.034 -3.706 1.479  2.420  1.145  H19  62B 53 
62B H20  H20  H 0 1 N N N 17.725 -78.042 -5.719 0.752  4.658  0.726  H20  62B 54 
62B H20A H20A H 0 0 N N N 17.014 -79.717 -6.151 1.445  4.558  -1.009 H20A 62B 55 
62B H22  H22  H 0 1 N N N 16.459 -75.819 -0.809 -2.698 -0.585 -1.257 H22  62B 56 
62B H22A H22A H 0 0 N N N 18.065 -75.937 -0.014 -2.588 -1.573 0.220  H22A 62B 57 
62B H23  H23  H 0 1 N N N 15.787 -73.711 -1.422 -5.278 -1.304 0.541  H23  62B 58 
62B H24  H24  H 0 1 N N N 16.827 -74.432 -4.216 -5.546 0.855  -1.600 H24  62B 59 
62B H24A H24A H 0 0 N N N 15.572 -75.278 -3.248 -4.725 -0.712 -1.802 H24A 62B 60 
62B H25  H25  H 0 1 N N N 14.588 -74.121 -5.217 -7.035 -0.794 -2.701 H25  62B 61 
62B H25A H25A H 0 0 N N N 13.990 -73.395 -3.687 -6.851 -1.889 -1.310 H25A 62B 62 
62B H26  H26  H 0 1 N N N 16.519 -72.455 -5.148 -8.013 0.931  -1.214 H26  62B 63 
62B H27  H27  H 0 1 N N N 16.175 -70.444 -3.641 -8.566 0.339  1.130  H27  62B 64 
62B H27A H27A H 0 0 N N N 14.879 -71.377 -2.819 -7.745 -1.228 0.928  H27A 62B 65 
62B H28  H28  H 0 1 N N N 17.827 -72.125 -3.056 -6.440 1.516  0.637  H28  62B 66 
62B H1   H1   H 0 1 N N N 19.009 -84.285 -2.864 6.701  -0.239 0.463  H1   62B 67 
62B H1A  H1A  H 0 1 N N N 17.540 -84.154 -3.889 5.893  0.474  -0.968 H1A  62B 68 
62B H2   H2   H 0 1 N N N 16.113 -84.414 -2.098 6.412  -1.615 -1.942 H2   62B 69 
62B H2A  H2A  H 0 1 N N N 17.539 -85.209 -1.348 6.495  -2.436 -0.358 H2A  62B 70 
62B H4   H4   H 0 1 N N N 16.265 -81.769 -1.994 3.551  -0.374 -1.444 H4   62B 71 
62B H6   H6   H 0 1 N N N 19.357 -81.418 -0.017 2.585  -3.092 0.970  H6   62B 72 
62B H7   H7   H 0 1 N N N 19.636 -80.043 -2.714 2.800  -0.517 2.580  H7   62B 73 
62B H7A  H7A  H 0 1 N N N 20.997 -80.771 -1.795 3.201  -2.159 3.111  H7A  62B 74 
62B H8   H8   H 0 1 N N N 20.140 -82.312 -3.510 5.261  -0.967 2.435  H8   62B 75 
62B H8A  H8A  H 0 1 N N N 19.879 -82.959 -1.854 4.935  -2.331 1.346  H8A  62B 76 
62B HN1  HN1  H 0 1 N N N 15.220 -70.593 -5.864 -9.460 -0.708 -2.218 HN1  62B 77 
62B HN1A HN1A H 0 0 N N N 14.631 -71.981 -6.490 -9.315 -1.693 -0.885 HN1A 62B 78 
62B HO2  HO2  H 0 1 N N N 14.639 -81.387 -5.677 4.570  3.470  -0.998 HO2  62B 79 
62B HO5  HO5  H 0 1 N N N 17.224 -70.570 -1.411 -6.883 0.851  2.888  HO5  62B 80 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
62B C10 C11  SING N N 1  
62B C10 C17  SING N N 2  
62B C10 C9   SING N N 3  
62B C11 C12  SING N N 4  
62B C11 O2   SING N N 5  
62B C12 C13  SING N N 6  
62B C12 C18  SING N N 7  
62B C12 C19  SING N N 8  
62B C13 C14  SING N N 9  
62B C14 C5   SING N N 10 
62B C14 O3   SING N N 11 
62B C15 C5   SING N N 12 
62B C16 C6   SING N N 13 
62B C19 C20  DOUB N N 14 
62B C21 C22  SING N N 15 
62B C21 O3   SING N N 16 
62B C21 O4   DOUB N N 17 
62B C22 S1   SING N N 18 
62B C23 C24  SING N N 19 
62B C23 C28  SING N N 20 
62B C23 S1   SING N N 21 
62B C24 C25  SING N N 22 
62B C25 C26  SING N N 23 
62B C26 C27  SING N N 24 
62B C26 N1   SING N N 25 
62B C27 C28  SING N N 26 
62B C28 O5   SING N N 27 
62B C1  C2   SING N N 28 
62B C1  C9   SING N N 29 
62B C2  C3   SING N N 30 
62B C3  C4   SING N N 31 
62B C3  O1   DOUB N N 32 
62B C4  C5   SING N N 33 
62B C4  C9   SING N N 34 
62B C5  C6   SING N N 35 
62B C6  C7   SING N N 36 
62B C7  C8   SING N N 37 
62B C8  C9   SING N N 38 
62B C10 H10  SING N N 39 
62B C11 H11  SING N N 40 
62B C13 H13  SING N N 41 
62B C13 H13A SING N N 42 
62B C14 H14  SING N N 43 
62B C15 H15  SING N N 44 
62B C15 H15A SING N N 45 
62B C15 H15B SING N N 46 
62B C16 H16  SING N N 47 
62B C16 H16A SING N N 48 
62B C16 H16B SING N N 49 
62B C17 H17  SING N N 50 
62B C17 H17A SING N N 51 
62B C17 H17B SING N N 52 
62B C18 H18  SING N N 53 
62B C18 H18A SING N N 54 
62B C18 H18B SING N N 55 
62B C19 H19  SING N N 56 
62B C20 H20  SING N N 57 
62B C20 H20A SING N N 58 
62B C22 H22  SING N N 59 
62B C22 H22A SING N N 60 
62B C23 H23  SING N N 61 
62B C24 H24  SING N N 62 
62B C24 H24A SING N N 63 
62B C25 H25  SING N N 64 
62B C25 H25A SING N N 65 
62B C26 H26  SING N N 66 
62B C27 H27  SING N N 67 
62B C27 H27A SING N N 68 
62B C28 H28  SING N N 69 
62B C1  H1   SING N N 70 
62B C1  H1A  SING N N 71 
62B C2  H2   SING N N 72 
62B C2  H2A  SING N N 73 
62B C4  H4   SING N N 74 
62B C6  H6   SING N N 75 
62B C7  H7   SING N N 76 
62B C7  H7A  SING N N 77 
62B C8  H8   SING N N 78 
62B C8  H8A  SING N N 79 
62B N1  HN1  SING N N 80 
62B N1  HN1A SING N N 81 
62B O2  HO2  SING N N 82 
62B O5  HO5  SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
62B SMILES           ACDLabs              12.01 "C1(C(C(CC(C3(C)C2C(CCC12CCC3C)=O)OC(CSC4CCC(CC4O)N)=O)(C)\C=C)O)C" 
62B InChI            InChI                1.03  
"InChI=1S/C28H45NO5S/c1-6-26(4)14-22(34-23(32)15-35-21-8-7-18(29)13-20(21)31)27(5)16(2)9-11-28(17(3)25(26)33)12-10-19(30)24(27)28/h6,16-18,20-22,24-25,31,33H,1,7-15,29H2,2-5H3/t16-,17+,18-,20-,21-,22-,24+,25+,26-,27+,28+/m1/s1" 
62B InChIKey         InChI                1.03  KPVIXBKIJXZQJX-FCEONZPQSA-N 
62B SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1CC[C@@]23CCC(=O)[C@H]2[C@]1(C)[C@@H](C[C@@](C)(C=C)[C@@H](O)[C@@H]3C)OC(=O)CS[C@@H]4CC[C@@H](N)C[C@H]4O" 
62B SMILES           CACTVS               3.385 "C[CH]1CC[C]23CCC(=O)[CH]2[C]1(C)[CH](C[C](C)(C=C)[CH](O)[CH]3C)OC(=O)CS[CH]4CC[CH](N)C[CH]4O" 
62B SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H]1CC[C@@]23CCC(=O)[C@H]2[C@@]1([C@@H](C[C@@]([C@H]([C@@H]3C)O)(C)C=C)OC(=O)CS[C@@H]4CC[C@H](C[C@H]4O)N)C" 
62B SMILES           "OpenEye OEToolkits" 1.7.6 "CC1CCC23CCC(=O)C2C1(C(CC(C(C3C)O)(C)C=C)OC(=O)CSC4CCC(CC4O)N)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
62B "SYSTEMATIC NAME" ACDLabs 12.01 "(3aS,4R,5S,6S,8R,9R,9aR,10R)-6-ethenyl-5-hydroxy-4,6,9,10-tetramethyl-1-oxodecahydro-3a,9-propanocyclopenta[8]annulen-8-yl {[(1R,2R,4R)-4-amino-2-hydroxycyclohexyl]sulfanyl}acetate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
62B "Create component"   2016-01-15 EBI  
62B "Other modification" 2016-01-29 EBI  
62B "Initial release"    2016-12-21 RCSB 
# 
