data_6DB
# 
_chem_comp.id                                    6DB 
_chem_comp.name                                  octopine 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H18 N4 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-03-17 
_chem_comp.pdbx_modified_date                    2016-11-25 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        246.264 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     6DB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5ITP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
6DB O   O1  O 0 1 N N N -14.089 80.644 -1.048 3.241  -1.625 1.568  O   6DB 1  
6DB C   C1  C 0 1 N N N -14.973 81.190 -0.357 3.434  -1.604 0.375  C   6DB 2  
6DB CA  C2  C 0 1 N N R -16.103 80.318 0.194  2.520  -0.810 -0.522 CA  6DB 3  
6DB CB  C3  C 0 1 N N N -17.300 80.403 -0.687 1.861  -1.747 -1.536 CB  6DB 4  
6DB N   N1  N 0 1 N N N -15.707 78.919 0.377  1.482  -0.159 0.289  N   6DB 5  
6DB CAI C4  C 0 1 N N S -14.516 78.647 1.176  0.962  1.038  -0.385 CAI 6DB 6  
6DB CAE C5  C 0 1 N N N -14.384 77.171 1.466  1.851  2.215  -0.076 CAE 6DB 7  
6DB OAB O2  O 0 1 N N N -15.287 76.369 1.118  2.819  2.071  0.633  OAB 6DB 8  
6DB OAF O3  O 0 1 N N N -13.367 76.753 2.087  1.568  3.423  -0.588 OAF 6DB 9  
6DB CAK C6  C 0 1 N N N -14.444 79.384 2.535  -0.456 1.327  0.111  CAK 6DB 10 
6DB CAL C7  C 0 1 N N N -15.565 79.000 3.485  -1.386 0.188  -0.312 CAL 6DB 11 
6DB CAM C8  C 0 1 N N N -15.540 79.660 4.866  -2.805 0.477  0.184  CAM 6DB 12 
6DB NAN N2  N 0 1 N N N -16.906 79.590 5.449  -3.695 -0.614 -0.221 NAN 6DB 13 
6DB CAP C9  C 0 1 N N N -17.339 80.313 6.604  -5.028 -0.574 0.115  CAP 6DB 14 
6DB NAO N3  N 0 1 N N N -18.574 80.192 7.029  -5.499 0.434  0.793  NAO 6DB 15 
6DB NAQ N4  N 0 1 N N N -16.460 81.011 7.238  -5.863 -1.598 -0.266 NAQ 6DB 16 
6DB OXT O4  O 0 1 N N N -14.924 82.421 -0.114 4.466  -2.283 -0.150 OXT 6DB 17 
6DB H1  H1  H 0 1 N N N -16.380 80.725 1.177  3.097  -0.052 -1.050 H1  6DB 18 
6DB H2  H2  H 0 1 N N N -18.103 79.772 -0.278 1.283  -2.506 -1.008 H2  6DB 19 
6DB H3  H3  H 0 1 N N N -17.644 81.446 -0.738 1.199  -1.173 -2.185 H3  6DB 20 
6DB H4  H4  H 0 1 N N N -17.038 80.054 -1.697 2.630  -2.231 -2.138 H4  6DB 21 
6DB H5  H5  H 0 1 N N N -16.473 78.447 0.813  0.737  -0.803 0.508  H5  6DB 22 
6DB H7  H7  H 0 1 N N N -13.634 78.952 0.594  0.943  0.870  -1.462 H7  6DB 23 
6DB H8  H8  H 0 1 N N N -13.436 75.814 2.213  2.167  4.148  -0.362 H8  6DB 24 
6DB H9  H9  H 0 1 N N N -13.483 79.143 3.013  -0.452 1.407  1.198  H9  6DB 25 
6DB H10 H10 H 0 1 N N N -14.499 80.467 2.349  -0.809 2.263  -0.321 H10 6DB 26 
6DB H11 H11 H 0 1 N N N -16.518 79.266 3.004  -1.391 0.108  -1.399 H11 6DB 27 
6DB H12 H12 H 0 1 N N N -15.520 77.911 3.633  -1.034 -0.748 0.120  H12 6DB 28 
6DB H13 H13 H 0 1 N N N -14.831 79.129 5.518  -2.800 0.557  1.271  H13 6DB 29 
6DB H14 H14 H 0 1 N N N -15.232 80.711 4.769  -3.157 1.413  -0.248 H14 6DB 30 
6DB H15 H15 H 0 1 N N N -17.571 78.993 5.000  -3.344 -1.364 -0.726 H15 6DB 31 
6DB H16 H16 H 0 1 N N N -18.729 80.697 7.878  -6.439 0.462  1.030  H16 6DB 32 
6DB H18 H18 H 0 1 N N N -16.711 81.482 8.083  -5.512 -2.348 -0.771 H18 6DB 33 
6DB H19 H19 H 0 1 N N N -15.527 81.081 6.884  -6.803 -1.570 -0.029 H19 6DB 34 
6DB H20 H20 H 0 1 N N N -14.154 82.795 -0.526 5.027  -2.774 0.466  H20 6DB 35 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
6DB O   C   DOUB N N 1  
6DB CB  CA  SING N N 2  
6DB C   OXT SING N N 3  
6DB C   CA  SING N N 4  
6DB CA  N   SING N N 5  
6DB N   CAI SING N N 6  
6DB OAB CAE DOUB N N 7  
6DB CAI CAE SING N N 8  
6DB CAI CAK SING N N 9  
6DB CAE OAF SING N N 10 
6DB CAK CAL SING N N 11 
6DB CAL CAM SING N N 12 
6DB CAM NAN SING N N 13 
6DB NAN CAP SING N N 14 
6DB CAP NAO DOUB N N 15 
6DB CAP NAQ SING N N 16 
6DB CA  H1  SING N N 17 
6DB CB  H2  SING N N 18 
6DB CB  H3  SING N N 19 
6DB CB  H4  SING N N 20 
6DB N   H5  SING N N 21 
6DB CAI H7  SING N N 22 
6DB OAF H8  SING N N 23 
6DB CAK H9  SING N N 24 
6DB CAK H10 SING N N 25 
6DB CAL H11 SING N N 26 
6DB CAL H12 SING N N 27 
6DB CAM H13 SING N N 28 
6DB CAM H14 SING N N 29 
6DB NAN H15 SING N N 30 
6DB NAO H16 SING N N 31 
6DB NAQ H18 SING N N 32 
6DB NAQ H19 SING N N 33 
6DB OXT H20 SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
6DB SMILES           ACDLabs              12.01 "O=C(O)C(NC(C(O)=O)CCCN\C(=N)N)C"                                                                                               
6DB InChI            InChI                1.03  "InChI=1S/C9H18N4O4/c1-5(7(14)15)13-6(8(16)17)3-2-4-12-9(10)11/h5-6,13H,2-4H2,1H3,(H,14,15)(H,16,17)(H4,10,11,12)/t5-,6+/m1/s1" 
6DB InChIKey         InChI                1.03  IMXSCCDUAFEIOE-RITPCOANSA-N                                                                                                     
6DB SMILES_CANONICAL CACTVS               3.385 "C[C@@H](N[C@@H](CCCNC(N)=N)C(O)=O)C(O)=O"                                                                                      
6DB SMILES           CACTVS               3.385 "C[CH](N[CH](CCCNC(N)=N)C(O)=O)C(O)=O"                                                                                          
6DB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "[H]/N=C(/N)\NCCC[C@@H](C(=O)O)N[C@H](C)C(=O)O"                                                                                 
6DB SMILES           "OpenEye OEToolkits" 2.0.4 "CC(C(=O)O)NC(CCCNC(=N)N)C(=O)O"                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
6DB "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-[(1R)-1-carboxyethyl]-L-arginine"                                                             
6DB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-5-carbamimidamido-2-[[(2~{R})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]pentanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
6DB "Create component" 2016-03-17 EBI  
6DB "Initial release"  2016-11-30 RCSB 
# 
