data_BNB
# 
_chem_comp.id                                    BNB 
_chem_comp.name                                  "N-[2-methyl-3-[4-methyl-6-[4-(4-methylpiperazine-1-carbonyl)anilino]-5-oxo-pyrazin-2-yl]phenyl]-4-(1-piperidyl)benzamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H41 N7 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-10-11 
_chem_comp.pdbx_modified_date                    2018-08-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        619.756 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BNB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6EP9 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BNB C1  C1  C 0 1 Y N N 25.467 6.250  3.254   1.284   -3.152 -1.152 C1  BNB 1  
BNB C2  C2  C 0 1 Y N N 26.655 5.649  2.811   1.312   -3.568 -2.482 C2  BNB 2  
BNB C3  C3  C 0 1 Y N N 27.872 5.948  3.400   0.240   -3.305 -3.311 C3  BNB 3  
BNB C4  C4  C 0 1 Y N N 27.945 6.851  4.452   -0.864  -2.630 -2.825 C4  BNB 4  
BNB C5  C5  C 0 1 Y N N 26.779 7.457  4.921   -0.901  -2.212 -1.500 C5  BNB 5  
BNB C6  C6  C 0 1 Y N N 25.539 7.172  4.324   0.172   -2.473 -0.662 C6  BNB 6  
BNB C8  C7  C 0 1 N N N 24.296 7.864  4.849   0.135   -2.020 0.775  C8  BNB 7  
BNB C9  C8  C 0 1 N N N 26.521 8.078  7.270   -3.248  -1.828 -1.480 C9  BNB 8  
BNB C12 C9  C 0 1 Y N N 26.531 8.848  9.662   -4.295  -0.286 0.170  C12 BNB 9  
BNB C19 C10 C 0 1 N N N 24.519 11.908 12.710  -9.878  1.828  0.389  C19 BNB 10 
BNB C18 C11 C 0 1 N N N 26.042 11.856 12.504  -8.582  1.299  -0.230 C18 BNB 11 
BNB C20 C12 C 0 1 N N N 23.937 13.257 12.259  -9.538  2.784  1.536  C20 BNB 12 
BNB C21 C13 C 0 1 N N N 24.316 13.493 10.793  -8.680  2.046  2.567  C21 BNB 13 
BNB C22 C14 C 0 1 N N N 25.850 13.514 10.681  -7.418  1.512  1.885  C22 BNB 14 
BNB C23 C15 C 0 1 N N N 24.198 5.863  2.555   2.434   -3.440 -0.259 C23 BNB 15 
BNB C16 C16 C 0 1 Y N N 26.502 10.498 7.888   -5.714  -1.506 -1.364 C16 BNB 16 
BNB C15 C17 C 0 1 Y N N 26.492 11.513 8.827   -6.822  -0.905 -0.811 C15 BNB 17 
BNB C24 C18 C 0 1 N N N 23.035 5.682  3.260   2.846   -4.727 -0.097 C24 BNB 18 
BNB N7  N1  N 0 1 N N N 26.820 8.382  5.976   -2.020  -1.529 -1.013 N7  BNB 19 
BNB C10 C19 C 0 1 Y N N 26.532 9.151  8.293   -4.439  -1.196 -0.881 C10 BNB 20 
BNB O11 O1  O 0 1 N N N 26.212 6.941  7.597   -3.375  -2.619 -2.394 O11 BNB 21 
BNB C13 C20 C 0 1 Y N N 26.517 9.871  10.591  -5.407  0.303  0.726  C13 BNB 22 
BNB C14 C21 C 0 1 Y N N 26.489 11.221 10.197  -6.675  -0.004 0.240  C14 BNB 23 
BNB N17 N2  N 0 1 N N N 26.492 12.264 11.150  -7.797  0.601  0.796  N17 BNB 24 
BNB N25 N3  N 0 1 N N N 21.872 5.323  2.635   3.896   -5.025 0.715  N25 BNB 25 
BNB C26 C22 C 0 1 N N N 21.882 5.124  1.286   4.533   -4.026 1.364  C26 BNB 26 
BNB C27 C23 C 0 1 N N N 23.138 5.311  0.547   4.065   -2.649 1.168  C27 BNB 27 
BNB N28 N4  N 0 1 N N N 24.222 5.671  1.216   3.046   -2.425 0.366  N28 BNB 28 
BNB O29 O2  O 0 1 N N N 20.877 4.799  0.667   5.477   -4.263 2.098  O29 BNB 29 
BNB C30 C24 C 0 1 N N N 20.636 5.155  3.411   4.332   -6.414 0.883  C30 BNB 30 
BNB N31 N5  N 0 1 N N N 23.093 5.088  -0.834  4.696   -1.593 1.814  N31 BNB 31 
BNB C32 C25 C 0 1 Y N N 24.113 5.214  -1.776  4.245   -0.291 1.622  C32 BNB 32 
BNB C33 C26 C 0 1 Y N N 25.399 5.664  -1.461  4.330   0.633  2.659  C33 BNB 33 
BNB C34 C27 C 0 1 Y N N 26.362 5.772  -2.448  3.885   1.922  2.473  C34 BNB 34 
BNB C35 C28 C 0 1 Y N N 26.056 5.436  -3.776  3.348   2.303  1.240  C35 BNB 35 
BNB C36 C29 C 0 1 Y N N 24.766 4.972  -4.087  3.263   1.372  0.200  C36 BNB 36 
BNB C37 C30 C 0 1 Y N N 23.810 4.871  -3.097  3.715   0.086  0.391  C37 BNB 37 
BNB C38 C31 C 0 1 N N N 27.094 5.541  -4.835  2.869   3.683  1.036  C38 BNB 38 
BNB N39 N6  N 0 1 N N N 26.990 6.381  -5.901  3.113   4.316  -0.128 N39 BNB 39 
BNB O40 O3  O 0 1 N N N 28.082 4.835  -4.739  2.255   4.250  1.919  O40 BNB 40 
BNB C41 C32 C 0 1 N N N 28.054 6.442  -6.935  2.731   5.724  -0.317 C41 BNB 41 
BNB C42 C33 C 0 1 N N N 27.415 6.199  -8.315  3.950   6.494  -0.837 C42 BNB 42 
BNB N43 N7  N 0 1 N N N 26.325 7.167  -8.551  4.471   5.826  -2.037 N43 BNB 43 
BNB C44 C34 C 0 1 N N N 25.277 7.005  -7.525  4.946   4.470  -1.728 C44 BNB 44 
BNB C45 C35 C 0 1 N N N 25.837 7.283  -6.125  3.774   3.619  -1.242 C45 BNB 45 
BNB C46 C36 C 0 1 N N N 25.703 6.791  -9.831  5.532   6.625  -2.665 C46 BNB 46 
BNB H1  H1  H 0 1 N N N 26.620 4.941  1.996   2.174   -4.095 -2.865 H1  BNB 47 
BNB H2  H2  H 0 1 N N N 28.773 5.474  3.038   0.264   -3.627 -4.341 H2  BNB 48 
BNB H3  H3  H 0 1 N N N 28.898 7.083  4.904   -1.701  -2.427 -3.477 H3  BNB 49 
BNB H4  H4  H 0 1 N N N 23.849 7.258  5.651   0.476   -0.987 0.840  H4  BNB 50 
BNB H5  H5  H 0 1 N N N 24.567 8.854  5.245   -0.885  -2.091 1.152  H5  BNB 51 
BNB H6  H6  H 0 1 N N N 23.570 7.983  4.031   0.788   -2.656 1.373  H6  BNB 52 
BNB H7  H7  H 0 1 N N N 26.541 7.819  9.989   -3.312  -0.048 0.548  H7  BNB 53 
BNB H8  H8  H 0 1 N N N 24.297 11.762 13.777  -10.453 2.359  -0.370 H8  BNB 54 
BNB H9  H9  H 0 1 N N N 24.051 11.103 12.124  -10.465 0.993  0.772  H9  BNB 55 
BNB H10 H10 H 0 1 N N N 26.378 10.824 12.682  -8.821  0.607  -1.038 H10 BNB 56 
BNB H11 H11 H 0 1 N N N 26.512 12.526 13.239  -8.002  2.133  -0.626 H11 BNB 57 
BNB H12 H12 H 0 1 N N N 24.349 14.064 12.882  -8.985  3.638  1.146  H12 BNB 58 
BNB H13 H13 H 0 1 N N N 22.842 13.239 12.359  -10.458 3.129  2.007  H13 BNB 59 
BNB H14 H14 H 0 1 N N N 23.906 14.456 10.455  -8.399  2.734  3.365  H14 BNB 60 
BNB H15 H15 H 0 1 N N N 23.910 12.683 10.170  -9.247  1.215  2.986  H15 BNB 61 
BNB H16 H16 H 0 1 N N N 26.120 13.670 9.626   -6.844  2.345  1.479  H16 BNB 62 
BNB H17 H17 H 0 1 N N N 26.232 14.350 11.285  -6.812  0.974  2.614  H17 BNB 63 
BNB H18 H18 H 0 1 N N N 26.487 10.741 6.836   -5.828  -2.209 -2.176 H18 BNB 64 
BNB H19 H19 H 0 1 N N N 26.486 12.542 8.500   -7.807  -1.144 -1.184 H19 BNB 65 
BNB H20 H20 H 0 1 N N N 23.038 5.826  4.330   2.332   -5.522 -0.619 H20 BNB 66 
BNB H21 H21 H 0 1 N N N 27.085 9.323  5.765   -1.912  -0.839 -0.339 H21 BNB 67 
BNB H22 H22 H 0 1 N N N 26.528 9.628  11.643  -5.297  1.002  1.541  H22 BNB 68 
BNB H23 H23 H 0 1 N N N 20.838 5.360  4.473   5.083   -6.653 0.131  H23 BNB 69 
BNB H24 H24 H 0 1 N N N 19.873 5.856  3.041   4.760   -6.542 1.877  H24 BNB 70 
BNB H25 H25 H 0 1 N N N 20.271 4.123  3.300   3.477   -7.079 0.767  H25 BNB 71 
BNB H26 H26 H 0 1 N N N 22.207 4.798  -1.195  5.451   -1.764 2.398  H26 BNB 72 
BNB H27 H27 H 0 1 N N N 25.641 5.928  -0.442  4.745   0.339  3.612  H27 BNB 73 
BNB H28 H28 H 0 1 N N N 27.354 6.116  -2.196  3.951   2.639  3.278  H28 BNB 74 
BNB H29 H29 H 0 1 N N N 24.523 4.694  -5.102  2.848   1.663  -0.754 H29 BNB 75 
BNB H30 H30 H 0 1 N N N 22.818 4.524  -3.345  3.651   -0.633 -0.412 H30 BNB 76 
BNB H31 H31 H 0 1 N N N 28.809 5.668  -6.735  1.920   5.790  -1.042 H31 BNB 77 
BNB H32 H32 H 0 1 N N N 28.531 7.433  -6.917  2.407   6.146  0.635  H32 BNB 78 
BNB H33 H33 H 0 1 N N N 27.008 5.178  -8.352  3.657   7.513  -1.087 H33 BNB 79 
BNB H34 H34 H 0 1 N N N 28.181 6.317  -9.096  4.722   6.515  -0.068 H34 BNB 80 
BNB H36 H36 H 0 1 N N N 24.458 7.709  -7.732  5.375   4.022  -2.624 H36 BNB 81 
BNB H37 H37 H 0 1 N N N 24.893 5.975  -7.562  5.704   4.520  -0.947 H37 BNB 82 
BNB H38 H38 H 0 1 N N N 26.165 8.331  -6.056  4.140   2.650  -0.904 H38 BNB 83 
BNB H39 H39 H 0 1 N N N 25.062 7.091  -5.369  3.060   3.481  -2.055 H39 BNB 84 
BNB H40 H40 H 0 1 N N N 24.879 7.484  -10.057 6.350   6.762  -1.959 H40 BNB 85 
BNB H41 H41 H 0 1 N N N 26.455 6.842  -10.633 5.900   6.107  -3.551 H41 BNB 86 
BNB H42 H42 H 0 1 N N N 25.310 5.766  -9.761  5.132   7.597  -2.953 H42 BNB 87 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BNB C46 N43 SING N N 1  
BNB N43 C42 SING N N 2  
BNB N43 C44 SING N N 3  
BNB C42 C41 SING N N 4  
BNB C44 C45 SING N N 5  
BNB C41 N39 SING N N 6  
BNB C45 N39 SING N N 7  
BNB N39 C38 SING N N 8  
BNB C38 O40 DOUB N N 9  
BNB C38 C35 SING N N 10 
BNB C36 C35 DOUB Y N 11 
BNB C36 C37 SING Y N 12 
BNB C35 C34 SING Y N 13 
BNB C37 C32 DOUB Y N 14 
BNB C34 C33 DOUB Y N 15 
BNB C32 C33 SING Y N 16 
BNB C32 N31 SING N N 17 
BNB N31 C27 SING N N 18 
BNB C27 N28 DOUB N N 19 
BNB C27 C26 SING N N 20 
BNB O29 C26 DOUB N N 21 
BNB N28 C23 SING N N 22 
BNB C26 N25 SING N N 23 
BNB C23 C1  SING N N 24 
BNB C23 C24 DOUB N N 25 
BNB N25 C24 SING N N 26 
BNB N25 C30 SING N N 27 
BNB C2  C1  DOUB Y N 28 
BNB C2  C3  SING Y N 29 
BNB C1  C6  SING Y N 30 
BNB C3  C4  DOUB Y N 31 
BNB C6  C8  SING N N 32 
BNB C6  C5  DOUB Y N 33 
BNB C4  C5  SING Y N 34 
BNB C5  N7  SING N N 35 
BNB N7  C9  SING N N 36 
BNB C9  O11 DOUB N N 37 
BNB C9  C10 SING N N 38 
BNB C16 C10 DOUB Y N 39 
BNB C16 C15 SING Y N 40 
BNB C10 C12 SING Y N 41 
BNB C15 C14 DOUB Y N 42 
BNB C12 C13 DOUB Y N 43 
BNB C14 C13 SING Y N 44 
BNB C14 N17 SING N N 45 
BNB C22 C21 SING N N 46 
BNB C22 N17 SING N N 47 
BNB C21 C20 SING N N 48 
BNB N17 C18 SING N N 49 
BNB C20 C19 SING N N 50 
BNB C18 C19 SING N N 51 
BNB C2  H1  SING N N 52 
BNB C3  H2  SING N N 53 
BNB C4  H3  SING N N 54 
BNB C8  H4  SING N N 55 
BNB C8  H5  SING N N 56 
BNB C8  H6  SING N N 57 
BNB C12 H7  SING N N 58 
BNB C19 H8  SING N N 59 
BNB C19 H9  SING N N 60 
BNB C18 H10 SING N N 61 
BNB C18 H11 SING N N 62 
BNB C20 H12 SING N N 63 
BNB C20 H13 SING N N 64 
BNB C21 H14 SING N N 65 
BNB C21 H15 SING N N 66 
BNB C22 H16 SING N N 67 
BNB C22 H17 SING N N 68 
BNB C16 H18 SING N N 69 
BNB C15 H19 SING N N 70 
BNB C24 H20 SING N N 71 
BNB N7  H21 SING N N 72 
BNB C13 H22 SING N N 73 
BNB C30 H23 SING N N 74 
BNB C30 H24 SING N N 75 
BNB C30 H25 SING N N 76 
BNB N31 H26 SING N N 77 
BNB C33 H27 SING N N 78 
BNB C34 H28 SING N N 79 
BNB C36 H29 SING N N 80 
BNB C37 H30 SING N N 81 
BNB C41 H31 SING N N 82 
BNB C41 H32 SING N N 83 
BNB C42 H33 SING N N 84 
BNB C42 H34 SING N N 85 
BNB C44 H36 SING N N 86 
BNB C44 H37 SING N N 87 
BNB C45 H38 SING N N 88 
BNB C45 H39 SING N N 89 
BNB C46 H40 SING N N 90 
BNB C46 H41 SING N N 91 
BNB C46 H42 SING N N 92 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BNB InChI            InChI                1.03  
"InChI=1S/C36H41N7O3/c1-25-30(8-7-9-31(25)39-34(44)26-12-16-29(17-13-26)42-18-5-4-6-19-42)32-24-41(3)36(46)33(38-32)37-28-14-10-27(11-15-28)35(45)43-22-20-40(2)21-23-43/h7-17,24H,4-6,18-23H2,1-3H3,(H,37,38)(H,39,44)" 
BNB InChIKey         InChI                1.03  VDSHGYXLLSEPML-UHFFFAOYSA-N 
BNB SMILES_CANONICAL CACTVS               3.385 "CN1CCN(CC1)C(=O)c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5ccc(cc5)N6CCCCC6)c4C)cc2" 
BNB SMILES           CACTVS               3.385 "CN1CCN(CC1)C(=O)c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5ccc(cc5)N6CCCCC6)c4C)cc2" 
BNB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1NC(=O)c2ccc(cc2)N3CCCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)C(=O)N6CCN(CC6)C)C" 
BNB SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1c(cccc1NC(=O)c2ccc(cc2)N3CCCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)C(=O)N6CCN(CC6)C)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "~{N}-[2-methyl-3-[4-methyl-6-[[4-(4-methylpiperazin-1-yl)carbonylphenyl]amino]-5-oxidanylidene-pyrazin-2-yl]phenyl]-4-piperidin-1-yl-benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BNB "Create component" 2017-10-11 EBI  
BNB "Initial release"  2018-08-22 RCSB 
# 
