data_CBB
#

_chem_comp.id                                   CBB
_chem_comp.name                                 "1-(3-CARBAMIMIDOYL-BENZYL)-1H-INDOLE-2-CARBOXYLIC ACID 3-CARBAMIMIDOYL-BENZYLESTER"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H23 N5 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(3-carbamimidoylphenyl)methyl 1-[(3-carbamimidoylphenyl)methyl]indole-2-carboxylate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-05-15
_chem_comp.pdbx_modified_date                   2021-10-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       425.482
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ?
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1LPK
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CBB  C1   C1   C  0  1  Y  N  N   3.821   9.875  26.113  -5.466   0.278  -1.193  C1   CBB   1  
CBB  C2   C2   C  0  1  Y  N  N   4.901   8.990  25.932  -4.096   0.168  -1.261  C2   CBB   2  
CBB  C3   C3   C  0  1  Y  N  N   5.331   8.698  24.620  -3.293   1.056  -0.549  C3   CBB   3  
CBB  C4   C4   C  0  1  Y  N  N   4.669   9.265  23.482  -3.897   2.059   0.233  C4   CBB   4  
CBB  C5   C5   C  0  1  Y  N  N   3.594  10.167  23.685  -5.295   2.151   0.285  C5   CBB   5  
CBB  C6   C6   C  0  1  Y  N  N   3.176  10.478  25.002  -6.060   1.273  -0.425  C6   CBB   6  
CBB  N7   N1   N  0  1  Y  N  N   6.346   7.887  24.136  -1.932   1.196  -0.419  N7   CBB   7  
CBB  C8   C7   C  0  1  Y  N  N   6.338   7.891  22.788  -1.673   2.261   0.423  C8   CBB   8  
CBB  C9   C8   C  0  1  Y  N  N   5.305   8.746  22.331  -2.852   2.799   0.836  C9   CBB   9  
CBB  C10  C9   C  0  1  N  N  N   7.206   7.105  24.998  -0.922   0.356  -1.067  C10  CBB  10  
CBB  C11  C10  C  0  1  Y  N  N   8.522   7.750  25.298  -0.690  -0.880  -0.237  C11  CBB  11  
CBB  C14  C11  C  0  1  Y  N  N   9.117   8.870  24.647   0.196  -0.842   0.826  C14  CBB  12  
CBB  C15  C12  C  0  1  Y  N  N  10.385   9.333  25.091   0.414  -1.972   1.592  C15  CBB  13  
CBB  C16  C13  C  0  1  Y  N  N  11.044   8.682  26.163  -0.251  -3.146   1.301  C16  CBB  14  
CBB  C17  C14  C  0  1  Y  N  N  10.403   7.583  26.797  -1.145  -3.191   0.232  C17  CBB  15  
CBB  C18  C15  C  0  1  Y  N  N   9.159   7.130  26.349  -1.365  -2.046  -0.534  C18  CBB  16  
CBB  C19  C16  C  0  1  N  N  N  10.940   6.868  27.941  -1.861  -4.447  -0.086  C19  CBB  17  
CBB  N20  N2   N  0  1  N  N  N  12.233   6.933  28.254  -2.779  -4.458  -1.010  N20  CBB  18  
CBB  N21  N3   N  0  1  N  N  N  10.037   6.137  28.640  -1.558  -5.605   0.597  N21  CBB  19  
CBB  C31  C17  C  0  1  N  N  N   7.159   7.101  21.987  -0.338   2.732   0.814  C31  CBB  20  
CBB  O32  O1   O  0  1  N  N  N   6.710   6.924  20.762   0.762   2.149   0.296  O32  CBB  21  
CBB  C33  C18  C  0  1  N  N  N   7.481   6.123  19.821   2.047   2.607   0.792  C33  CBB  22  
CBB  C34  C19  C  0  1  Y  N  N   7.476   4.624  20.112   3.152   1.932   0.022  C34  CBB  23  
CBB  C37  C20  C  0  1  Y  N  N   6.762   4.010  21.176   3.706   2.557  -1.080  C37  CBB  24  
CBB  C38  C21  C  0  1  Y  N  N   6.853   2.603  21.375   4.722   1.944  -1.793  C38  CBB  25  
CBB  C39  C22  C  0  1  Y  N  N   7.650   1.816  20.509   5.188   0.704  -1.406  C39  CBB  26  
CBB  C40  C23  C  0  1  Y  N  N   8.351   2.433  19.437   4.634   0.069  -0.295  C40  CBB  27  
CBB  C41  C24  C  0  1  Y  N  N   8.253   3.827  19.244   3.614   0.694   0.422  C41  CBB  28  
CBB  C42  C25  C  0  1  N  N  N   9.241   1.716  18.526   5.129  -1.262   0.125  C42  CBB  29  
CBB  N43  N4   N  0  1  N  N  N   9.180   1.934  17.220   4.609  -1.853   1.162  N43  CBB  30  
CBB  N44  N5   N  0  1  N  N  N  10.175   0.905  19.014   6.140  -1.875  -0.583  N44  CBB  31  
CBB  O49  O2   O  0  1  N  N  N   8.175   6.592  22.353  -0.225   3.649   1.605  O49  CBB  32  
CBB  H1   H1   H  0  1  N  N  N   3.478  10.098  27.113  -6.086  -0.412  -1.746  H1   CBB  33  
CBB  H2   H2   H  0  1  N  N  N   5.392   8.542  26.783  -3.644  -0.606  -1.864  H2   CBB  34  
CBB  H3   H3   H  0  1  N  N  N   3.096  10.615  22.838  -5.765   2.918   0.883  H3   CBB  35  
CBB  H4   H4   H  0  1  N  N  N   2.366  11.174  25.161  -7.136   1.346  -0.384  H4   CBB  36  
CBB  H5   H5   H  0  1  N  N  N   5.052   8.960  21.303  -2.969   3.642   1.500  H5   CBB  37  
CBB  H6   H6   H  0  1  N  N  N   6.680   6.936  25.949  -1.271   0.067  -2.058  H6   CBB  38  
CBB  H7   H7   H  0  1  N  N  N   7.399   6.139  24.509   0.010   0.913  -1.158  H7   CBB  39  
CBB  H8   H8   H  0  1  N  N  N   8.611   9.360  23.828   0.719   0.074   1.057  H8   CBB  40  
CBB  H9   H9   H  0  1  N  N  N  10.847  10.183  24.610   1.107  -1.936   2.420  H9   CBB  41  
CBB  H10  H10  H  0  1  N  N  N  12.017   9.015  26.493  -0.079  -4.028   1.901  H10  CBB  42  
CBB  H11  H11  H  0  1  N  N  N   8.693   6.284  26.833  -2.059  -2.074  -1.361  H11  CBB  43  
CBB  H12  H12  H  0  1  N  N  N  12.452   6.382  29.059  -3.248  -5.281  -1.218  H12  CBB  44  
CBB  H13  H13  H  0  1  N  N  N  10.330   5.609  29.437  -0.874  -5.597   1.285  H13  CBB  45  
CBB  H14  H14  H  0  1  N  N  N   9.078   6.126  28.358  -2.027  -6.428   0.389  H14  CBB  46  
CBB  H15  H15  H  0  1  N  N  N   8.523   6.474  19.845   2.122   3.687   0.665  H15  CBB  47  
CBB  H16  H16  H  0  1  N  N  N   7.064   6.279  18.815   2.137   2.359   1.850  H16  CBB  48  
CBB  H17  H17  H  0  1  N  N  N   6.151   4.610  21.833   3.345   3.527  -1.387  H17  CBB  49  
CBB  H18  H18  H  0  1  N  N  N   6.314   2.136  22.186   5.150   2.437  -2.653  H18  CBB  50  
CBB  H19  H19  H  0  1  N  N  N   7.725   0.750  20.662   5.981   0.227  -1.963  H19  CBB  51  
CBB  H20  H20  H  0  1  N  N  N   8.779   4.290  18.422   3.181   0.207   1.283  H20  CBB  52  
CBB  H21  H21  H  0  1  N  N  N   8.483   2.612  16.986   3.898  -1.421   1.660  H21  CBB  53  
CBB  H22  H22  H  0  1  N  N  N  10.267   0.787  20.003   6.527  -1.435  -1.356  H22  CBB  54  
CBB  H23  H23  H  0  1  N  N  N  10.785   0.414  18.392   6.465  -2.747  -0.308  H23  CBB  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CBB  N43  C42  DOUB  N  N   1  
CBB  C42  N44  SING  N  N   2  
CBB  C42  C40  SING  N  N   3  
CBB  C41  C40  DOUB  Y  N   4  
CBB  C41  C34  SING  Y  N   5  
CBB  C40  C39  SING  Y  N   6  
CBB  C33  C34  SING  N  N   7  
CBB  C33  O32  SING  N  N   8  
CBB  C34  C37  DOUB  Y  N   9  
CBB  C39  C38  DOUB  Y  N  10  
CBB  O32  C31  SING  N  N  11  
CBB  C37  C38  SING  Y  N  12  
CBB  C31  O49  DOUB  N  N  13  
CBB  C31  C8   SING  N  N  14  
CBB  C9   C8   DOUB  Y  N  15  
CBB  C9   C4   SING  Y  N  16  
CBB  C8   N7   SING  Y  N  17  
CBB  C4   C5   SING  Y  N  18  
CBB  C4   C3   DOUB  Y  N  19  
CBB  C5   C6   DOUB  Y  N  20  
CBB  N7   C3   SING  Y  N  21  
CBB  N7   C10  SING  N  N  22  
CBB  C3   C2   SING  Y  N  23  
CBB  C14  C15  DOUB  Y  N  24  
CBB  C14  C11  SING  Y  N  25  
CBB  C10  C11  SING  N  N  26  
CBB  C6   C1   SING  Y  N  27  
CBB  C15  C16  SING  Y  N  28  
CBB  C11  C18  DOUB  Y  N  29  
CBB  C2   C1   DOUB  Y  N  30  
CBB  C16  C17  DOUB  Y  N  31  
CBB  C18  C17  SING  Y  N  32  
CBB  C17  C19  SING  N  N  33  
CBB  C19  N20  DOUB  N  N  34  
CBB  C19  N21  SING  N  N  35  
CBB  C1   H1   SING  N  N  36  
CBB  C2   H2   SING  N  N  37  
CBB  C5   H3   SING  N  N  38  
CBB  C6   H4   SING  N  N  39  
CBB  C9   H5   SING  N  N  40  
CBB  C10  H6   SING  N  N  41  
CBB  C10  H7   SING  N  N  42  
CBB  C14  H8   SING  N  N  43  
CBB  C15  H9   SING  N  N  44  
CBB  C16  H10  SING  N  N  45  
CBB  C18  H11  SING  N  N  46  
CBB  N20  H12  SING  N  N  47  
CBB  N21  H13  SING  N  N  48  
CBB  N21  H14  SING  N  N  49  
CBB  C33  H15  SING  N  N  50  
CBB  C33  H16  SING  N  N  51  
CBB  C37  H17  SING  N  N  52  
CBB  C38  H18  SING  N  N  53  
CBB  C39  H19  SING  N  N  54  
CBB  C41  H20  SING  N  N  55  
CBB  N43  H21  SING  N  N  56  
CBB  N44  H22  SING  N  N  57  
CBB  N44  H23  SING  N  N  58  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CBB  InChI             InChI                 1.03   "InChI=1S/C25H23N5O2/c26-23(27)19-8-3-5-16(11-19)14-30-21-10-2-1-7-18(21)13-22(30)25(31)32-15-17-6-4-9-20(12-17)24(28)29/h1-13H,14-15H2,(H3,26,27)(H3,28,29)"  
CBB  InChIKey          InChI                 1.03   ZJZBBFMRHRUCQD-UHFFFAOYSA-N  
CBB  SMILES_CANONICAL  CACTVS                3.385  "NC(=N)c1cccc(COC(=O)c2cc3ccccc3n2Cc4cccc(c4)C(N)=N)c1"  
CBB  SMILES            CACTVS                3.385  "NC(=N)c1cccc(COC(=O)c2cc3ccccc3n2Cc4cccc(c4)C(N)=N)c1"  
CBB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "[H]/N=C(/c1cccc(c1)Cn2c3ccccc3cc2C(=O)OCc4cccc(c4)/C(=N\[H])/N)\N"  
CBB  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc2c(c1)cc(n2Cc3cccc(c3)C(=N)N)C(=O)OCc4cccc(c4)C(=N)N"  
#
_pdbx_chem_comp_identifier.comp_id          CBB
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "(3-carbamimidoylphenyl)methyl 1-[(3-carbamimidoylphenyl)methyl]indole-2-carboxylate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CBB  "Create component"    2002-05-15  RCSB  
CBB  "Modify descriptor"   2011-06-04  RCSB  
CBB  "Other modification"  2021-10-18  RCSB  
##
