data_EJB
#

_chem_comp.id                                   EJB
_chem_comp.name                                 "7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C23 H32 N6 O3 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-12-08
_chem_comp.pdbx_modified_date                   2021-12-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       472.604
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    EJB
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7T39
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
EJB  C17  C1   C  0  1  Y  N  N  27.279  17.840  26.165   9.019  -1.216   0.490  C17  EJB   1  
EJB  C20  C2   C  0  1  Y  N  N  26.656  19.182  24.405  11.045  -0.228   0.966  C20  EJB   2  
EJB  C21  C3   C  0  1  Y  N  N  27.809  18.900  23.704  10.800   0.796   0.071  C21  EJB   3  
EJB  C22  C4   C  0  1  Y  N  N  28.736  18.045  24.276   9.607   0.806  -0.635  C22  EJB   4  
EJB  C11  C5   C  0  1  N  N  N  32.998  13.486  25.269   1.507   1.288   0.163  C11  EJB   5  
EJB  C12  C6   C  0  1  N  N  N  31.523  13.162  25.171   2.593   0.751  -0.772  C12  EJB   6  
EJB  C14  C7   C  0  1  N  N  N  29.810  14.875  24.521   5.028   0.234  -0.985  C14  EJB   7  
EJB  C19  C8   C  0  1  N  N  N  26.163  18.232  28.370   8.332  -3.485  -0.237  C19  EJB   8  
EJB  C1   C9   C  0  1  Y  N  N  40.240   8.437  28.279  -8.689  -0.757  -1.105  C1   EJB   9  
EJB  O1   O1   O  0  1  N  N  N  37.001  11.967  23.048  -3.818   4.016   0.628  O1   EJB  10  
EJB  C8   C10  C  0  1  N  N  S  36.123  11.688  24.133  -3.614   2.645   0.977  C8   EJB  11  
EJB  C7   C11  C  0  1  N  N  R  36.206  10.241  24.643  -4.929   1.847   0.826  C7   EJB  12  
EJB  O    O2   O  0  1  N  N  N  36.526   9.277  23.644  -5.984   2.701   0.379  O    EJB  13  
EJB  C9   C12  C  0  1  N  N  S  36.554  12.505  25.350  -2.648   1.970  -0.022  C9   EJB  14  
EJB  O2   O3   O  0  1  N  N  N  37.465  11.660  26.077  -3.166   0.633  -0.190  O2   EJB  15  
EJB  C6   C13  C  0  1  N  N  R  37.358  10.317  25.648  -4.602   0.785  -0.247  C6   EJB  16  
EJB  N3   N1   N  0  1  Y  N  N  37.183   9.482  26.827  -5.262  -0.484   0.073  N3   EJB  17  
EJB  C2   C14  C  0  1  Y  N  N  38.190   8.941  27.588  -6.548  -0.805  -0.262  C2   EJB  18  
EJB  N2   N2   N  0  1  Y  N  N  39.506   9.103  27.386  -7.521  -0.179  -0.922  N2   EJB  19  
EJB  N1   N3   N  0  1  Y  N  N  39.828   7.684  29.299  -8.964  -1.968  -0.655  N1   EJB  20  
EJB  C5   C15  C  0  1  Y  N  N  35.972   9.092  27.379  -4.680  -1.523   0.753  C5   EJB  21  
EJB  C4   C16  C  0  1  Y  N  N  36.185   8.309  28.461  -5.557  -2.532   0.877  C4   EJB  22  
EJB  C3   C17  C  0  1  Y  N  N  37.605   8.194  28.616  -6.793  -2.102   0.225  C3   EJB  23  
EJB  C    C18  C  0  1  Y  N  N  38.500   7.549  29.501  -8.055  -2.675   0.011  C    EJB  24  
EJB  N    N4   N  0  1  N  N  N  38.085   6.826  30.546  -8.348  -3.943   0.480  N    EJB  25  
EJB  C10  C19  C  0  1  N  N  N  35.534  12.990  26.366  -1.232   1.925   0.554  C10  EJB  26  
EJB  S    S1   S  0  1  N  N  N  33.931  12.199  26.131  -0.092   1.265  -0.693  S    EJB  27  
EJB  C13  C20  C  0  1  N  N  N  30.833  13.876  24.039   3.942   0.771  -0.050  C13  EJB  28  
EJB  N4   N5   N  0  1  N  N  N  30.434  15.975  25.255   6.323   0.253  -0.292  N4   EJB  29  
EJB  C15  C21  C  0  1  N  N  N  29.512  16.603  26.195   7.393  -0.257  -1.161  C15  EJB  30  
EJB  C16  C22  C  0  1  Y  N  N  28.496  17.496  25.532   8.703  -0.223  -0.417  C16  EJB  31  
EJB  N5   N6   N  0  1  Y  N  N  26.378  18.669  25.615  10.162  -1.190   1.147  N5   EJB  32  
EJB  C18  C23  C  0  1  N  N  N  26.894  17.269  27.503   8.044  -2.339   0.735  C18  EJB  33  
EJB  H1   H1   H  0  1  N  N  N  25.937  19.852  23.957  11.970  -0.241   1.523  H1   EJB  34  
EJB  H2   H2   H  0  1  N  N  N  27.985  19.336  22.732  11.527   1.582  -0.074  H2   EJB  35  
EJB  H3   H3   H  0  1  N  N  N  29.646  17.804  23.747   9.389   1.594  -1.341  H3   EJB  36  
EJB  H4   H4   H  0  1  N  N  N  33.404  13.596  24.253   1.452   0.661   1.053  H4   EJB  37  
EJB  H5   H5   H  0  1  N  N  N  33.116  14.434  25.815   1.749   2.310   0.452  H5   EJB  38  
EJB  H6   H6   H  0  1  N  N  N  31.038  13.452  26.115   2.351  -0.271  -1.061  H6   EJB  39  
EJB  H7   H7   H  0  1  N  N  N  31.412  12.078  25.020   2.648   1.377  -1.662  H7   EJB  40  
EJB  H8   H8   H  0  1  N  N  N  29.274  15.285  23.652   4.786  -0.789  -1.274  H8   EJB  41  
EJB  H9   H9   H  0  1  N  N  N  29.096  14.363  25.184   5.083   0.860  -1.875  H9   EJB  42  
EJB  H10  H10  H  0  1  N  N  N  25.915  17.749  29.327   8.225  -3.128  -1.262  H10  EJB  43  
EJB  H11  H11  H  0  1  N  N  N  26.797  19.111  28.557   9.348  -3.846  -0.082  H11  EJB  44  
EJB  H12  H12  H  0  1  N  N  N  25.237  18.548  27.867   7.626  -4.297  -0.060  H12  EJB  45  
EJB  H13  H13  H  0  1  N  N  N  41.310   8.519  28.160  -9.455  -0.217  -1.641  H13  EJB  46  
EJB  H14  H14  H  0  1  N  N  N  36.900  12.874  22.783  -4.462   4.472   1.187  H14  EJB  47  
EJB  H15  H15  H  0  1  N  N  N  35.081  11.929  23.874  -3.233   2.564   1.994  H15  EJB  48  
EJB  H16  H16  H  0  1  N  N  N  35.274   9.979  25.166  -5.196   1.369   1.768  H16  EJB  49  
EJB  H17  H17  H  0  1  N  N  N  36.558   8.412  24.036  -6.190   3.423   0.988  H17  EJB  50  
EJB  H18  H18  H  0  1  N  N  N  37.104  13.384  24.983  -2.655   2.502  -0.974  H18  EJB  51  
EJB  H19  H19  H  0  1  N  N  N  38.282  10.019  25.131  -4.907   1.134  -1.233  H19  EJB  52  
EJB  H20  H20  H  0  1  N  N  N  35.000   9.373  27.000  -3.669  -1.528   1.132  H20  EJB  53  
EJB  H21  H21  H  0  1  N  N  N  35.430   7.857  29.088  -5.383  -3.480   1.364  H21  EJB  54  
EJB  H22  H22  H  0  1  N  N  N  38.877   6.476  31.046  -9.225  -4.327   0.325  H22  EJB  55  
EJB  H23  H23  H  0  1  N  N  N  37.536   7.401  31.152  -7.676  -4.447   0.965  H23  EJB  56  
EJB  H24  H24  H  0  1  N  N  N  35.901  12.759  27.377  -0.921   2.931   0.834  H24  EJB  57  
EJB  H25  H25  H  0  1  N  N  N  35.414  14.078  26.259  -1.219   1.283   1.435  H25  EJB  58  
EJB  H26  H26  H  0  1  N  N  N  30.327  13.130  23.408   4.185   1.793   0.239  H26  EJB  59  
EJB  H27  H27  H  0  1  N  N  N  31.590  14.407  23.443   3.887   0.144   0.840  H27  EJB  60  
EJB  H28  H28  H  0  1  N  N  N  31.219  15.619  25.763   6.541   1.179   0.043  H28  EJB  61  
EJB  H30  H30  H  0  1  N  N  N  28.977  15.811  26.740   7.167  -1.283  -1.451  H30  EJB  62  
EJB  H31  H31  H  0  1  N  N  N  30.096  17.207  26.905   7.464   0.366  -2.052  H31  EJB  63  
EJB  H32  H32  H  0  1  N  N  N  26.250  16.393  27.336   8.151  -2.696   1.759  H32  EJB  64  
EJB  H33  H33  H  0  1  N  N  N  27.810  16.956  28.025   7.028  -1.977   0.580  H33  EJB  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
EJB  O1   C8   SING  N  N   1  
EJB  O    C7   SING  N  N   2  
EJB  C21  C22  DOUB  Y  N   3  
EJB  C21  C20  SING  Y  N   4  
EJB  C13  C14  SING  N  N   5  
EJB  C13  C12  SING  N  N   6  
EJB  C8   C7   SING  N  N   7  
EJB  C8   C9   SING  N  N   8  
EJB  C22  C16  SING  Y  N   9  
EJB  C20  N5   DOUB  Y  N  10  
EJB  C14  N4   SING  N  N  11  
EJB  C7   C6   SING  N  N  12  
EJB  C12  C11  SING  N  N  13  
EJB  N4   C15  SING  N  N  14  
EJB  C11  S    SING  N  N  15  
EJB  C9   O2   SING  N  N  16  
EJB  C9   C10  SING  N  N  17  
EJB  C16  C17  DOUB  Y  N  18  
EJB  C16  C15  SING  N  N  19  
EJB  N5   C17  SING  Y  N  20  
EJB  C6   O2   SING  N  N  21  
EJB  C6   N3   SING  N  N  22  
EJB  S    C10  SING  N  N  23  
EJB  C17  C18  SING  N  N  24  
EJB  N3   C5   SING  Y  N  25  
EJB  N3   C2   SING  Y  N  26  
EJB  C5   C4   DOUB  Y  N  27  
EJB  N2   C2   DOUB  Y  N  28  
EJB  N2   C1   SING  Y  N  29  
EJB  C18  C19  SING  N  N  30  
EJB  C2   C3   SING  Y  N  31  
EJB  C1   N1   DOUB  Y  N  32  
EJB  C4   C3   SING  Y  N  33  
EJB  C3   C    DOUB  Y  N  34  
EJB  N1   C    SING  Y  N  35  
EJB  C    N    SING  N  N  36  
EJB  C20  H1   SING  N  N  37  
EJB  C21  H2   SING  N  N  38  
EJB  C22  H3   SING  N  N  39  
EJB  C11  H4   SING  N  N  40  
EJB  C11  H5   SING  N  N  41  
EJB  C12  H6   SING  N  N  42  
EJB  C12  H7   SING  N  N  43  
EJB  C14  H8   SING  N  N  44  
EJB  C14  H9   SING  N  N  45  
EJB  C19  H10  SING  N  N  46  
EJB  C19  H11  SING  N  N  47  
EJB  C19  H12  SING  N  N  48  
EJB  C1   H13  SING  N  N  49  
EJB  O1   H14  SING  N  N  50  
EJB  C8   H15  SING  N  N  51  
EJB  C7   H16  SING  N  N  52  
EJB  O    H17  SING  N  N  53  
EJB  C9   H18  SING  N  N  54  
EJB  C6   H19  SING  N  N  55  
EJB  C5   H20  SING  N  N  56  
EJB  C4   H21  SING  N  N  57  
EJB  N    H22  SING  N  N  58  
EJB  N    H23  SING  N  N  59  
EJB  C10  H24  SING  N  N  60  
EJB  C10  H25  SING  N  N  61  
EJB  C13  H26  SING  N  N  62  
EJB  C13  H27  SING  N  N  63  
EJB  N4   H28  SING  N  N  64  
EJB  C15  H30  SING  N  N  65  
EJB  C15  H31  SING  N  N  66  
EJB  C18  H32  SING  N  N  67  
EJB  C18  H33  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
EJB  SMILES            ACDLabs               12.01  "CCc1ncccc1CNCCCCSCC1OC(n2ccc3c(N)ncnc32)C(O)C1O"  
EJB  InChI             InChI                 1.03   "InChI=1S/C23H32N6O3S/c1-2-17-15(6-5-9-26-17)12-25-8-3-4-11-33-13-18-19(30)20(31)23(32-18)29-10-7-16-21(24)27-14-28-22(16)29/h5-7,9-10,14,18-20,23,25,30-31H,2-4,8,11-13H2,1H3,(H2,24,27,28)/t18-,19-,20-,23-/m1/s1"  
EJB  InChIKey          InChI                 1.03   SBQBBUZLJIAJBR-GLHSZLCASA-N  
EJB  SMILES_CANONICAL  CACTVS                3.385  "CCc1ncccc1CNCCCCSC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3ccc4c(N)ncnc34"  
EJB  SMILES            CACTVS                3.385  "CCc1ncccc1CNCCCCSC[CH]2O[CH]([CH](O)[CH]2O)n3ccc4c(N)ncnc34"  
EJB  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCc1c(cccn1)CNCCCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3ccc4c3ncnc4N)O)O"  
EJB  SMILES            "OpenEye OEToolkits"  2.0.7  "CCc1c(cccn1)CNCCCCSCC2C(C(C(O2)n3ccc4c3ncnc4N)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
EJB  "SYSTEMATIC NAME"  ACDLabs               12.01  "7-[5-S-(4-{[(2-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine"  
EJB  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R},3~{R},4~{S},5~{S})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-[4-[(2-ethylpyridin-3-yl)methylamino]butylsulfanylmethyl]oxolane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
EJB  "Create component"  2021-12-08  RCSB  
EJB  "Initial release"   2021-12-22  RCSB  
##
