data_GEB
# 
_chem_comp.id                                    GEB 
_chem_comp.name                                  "3-[4-(3-oxidanylidenepropyl)piperazin-1-yl]propanal" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H18 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-09-13 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        198.262 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GEB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6HLE 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GEB C32 C1  C 0 1 N N N N N N 57.772 -34.502 -12.234 -3.829 1.603  -0.391 C32 GEB 1  
GEB C33 C2  C 0 1 N N N N N N 56.789 -34.341 -13.203 -3.164 0.573  0.485  C33 GEB 2  
GEB C34 C3  C 0 1 N N N N N N 55.673 -33.450 -12.669 -2.204 -0.270 -0.357 C34 GEB 3  
GEB C35 C4  C 0 1 N N N N N N 53.611 -32.299 -13.242 -0.679 -0.635 1.488  C35 GEB 4  
GEB C36 C5  C 0 1 N N N N N N 52.690 -31.938 -14.409 0.470  0.074  0.767  C36 GEB 5  
GEB C37 C6  C 0 1 N N N N N N 51.424 -32.975 -16.294 2.373  -0.273 -0.689 C37 GEB 6  
GEB C38 C7  C 0 1 N N N N N N 50.273 -32.067 -15.829 3.383  0.160  0.377  C38 GEB 7  
GEB C39 C8  C 0 1 N N N N N N 49.452 -32.561 -14.795 4.571  0.805  -0.289 C39 GEB 8  
GEB C43 C9  C 0 1 N N N N N N 52.700 -34.353 -14.764 0.338  -1.541 -1.031 C43 GEB 9  
GEB C44 C10 C 0 1 N N N N N N 54.047 -34.519 -14.065 -0.811 -2.250 -0.310 C44 GEB 10 
GEB N16 N1  N 0 1 N N N N N N 54.651 -33.225 -13.704 -1.556 -1.274 0.498  N16 GEB 11 
GEB N17 N2  N 0 1 N N N N N N 52.602 -33.035 -15.397 1.215  -0.902 -0.040 N17 GEB 12 
GEB O6  O1  O 0 1 N N N N N N 58.711 -33.712 -12.151 -5.034 1.669  -0.438 O6  GEB 13 
GEB O7  O2  O 0 1 N N N N N N 49.812 -32.436 -13.626 4.915  1.916  0.034  O7  GEB 14 
GEB H1  H1  H 0 1 N N N N N N 57.711 -35.331 -11.545 -3.228 2.285  -0.974 H1  GEB 15 
GEB H2  H2  H 0 1 N N N N N N 56.374 -35.325 -13.469 -2.609 1.074  1.278  H2  GEB 16 
GEB H3  H3  H 0 1 N N N N N N 57.231 -33.876 -14.097 -3.923 -0.073 0.926  H3  GEB 17 
GEB H4  H4  H 0 1 N N N N N N 56.098 -32.482 -12.364 -2.760 -0.771 -1.149 H4  GEB 18 
GEB H5  H5  H 0 1 N N N N N N 55.206 -33.936 -11.800 -1.445 0.376  -0.798 H5  GEB 19 
GEB H6  H6  H 0 1 N N N N N N 54.082 -31.385 -12.851 -0.274 -1.394 2.158  H6  GEB 20 
GEB H7  H7  H 0 1 N N N N N N 53.022 -32.778 -12.446 -1.250 0.092  2.065  H7  GEB 21 
GEB H8  H8  H 0 1 N N N N N N 53.082 -31.040 -14.908 0.067  0.851  0.118  H8  GEB 22 
GEB H9  H9  H 0 1 N N N N N N 51.683 -31.730 -14.017 1.137  0.525  1.502  H9  GEB 23 
GEB H10 H10 H 0 1 N N N N N N 51.027 -33.996 -16.399 2.044  0.599  -1.253 H10 GEB 24 
GEB H11 H11 H 0 1 N N N N N N 51.765 -32.612 -17.275 2.843  -0.987 -1.365 H11 GEB 25 
GEB H12 H12 H 0 1 N N N N N N 50.715 -31.122 -15.480 2.913  0.874  1.053  H12 GEB 26 
GEB H13 H13 H 0 1 N N N N N N 49.630 -31.872 -16.700 3.712  -0.713 0.941  H13 GEB 27 
GEB H14 H14 H 0 1 N N N N N N 48.515 -33.045 -15.028 5.114  0.273  -1.056 H14 GEB 28 
GEB H15 H15 H 0 1 N N N N N N 51.894 -34.458 -14.023 0.910  -2.268 -1.607 H15 GEB 29 
GEB H16 H16 H 0 1 N N N N N N 52.595 -35.132 -15.534 -0.066 -0.782 -1.701 H16 GEB 30 
GEB H17 H17 H 0 1 N N N N N N 53.900 -35.109 -13.148 -1.479 -2.700 -1.044 H17 GEB 31 
GEB H18 H18 H 0 1 N N N N N N 54.732 -35.054 -14.739 -0.408 -3.027 0.340  H18 GEB 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GEB C37 C38 SING N N 1  
GEB C37 N17 SING N N 2  
GEB C38 C39 SING N N 3  
GEB N17 C43 SING N N 4  
GEB N17 C36 SING N N 5  
GEB C39 O7  DOUB N N 6  
GEB C43 C44 SING N N 7  
GEB C36 C35 SING N N 8  
GEB C44 N16 SING N N 9  
GEB N16 C35 SING N N 10 
GEB N16 C34 SING N N 11 
GEB C33 C34 SING N N 12 
GEB C33 C32 SING N N 13 
GEB C32 O6  DOUB N N 14 
GEB C32 H1  SING N N 15 
GEB C33 H2  SING N N 16 
GEB C33 H3  SING N N 17 
GEB C34 H4  SING N N 18 
GEB C34 H5  SING N N 19 
GEB C35 H6  SING N N 20 
GEB C35 H7  SING N N 21 
GEB C36 H8  SING N N 22 
GEB C36 H9  SING N N 23 
GEB C37 H10 SING N N 24 
GEB C37 H11 SING N N 25 
GEB C38 H12 SING N N 26 
GEB C38 H13 SING N N 27 
GEB C39 H14 SING N N 28 
GEB C43 H15 SING N N 29 
GEB C43 H16 SING N N 30 
GEB C44 H17 SING N N 31 
GEB C44 H18 SING N N 32 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GEB InChI            InChI                1.03  "InChI=1S/C10H18N2O2/c13-9-1-3-11-5-7-12(8-6-11)4-2-10-14/h9-10H,1-8H2" 
GEB InChIKey         InChI                1.03  YNICZMOQZCCMFE-UHFFFAOYSA-N                                             
GEB SMILES_CANONICAL CACTVS               3.385 "O=CCCN1CCN(CCC=O)CC1"                                                  
GEB SMILES           CACTVS               3.385 "O=CCCN1CCN(CCC=O)CC1"                                                  
GEB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C1CN(CCN1CCC=O)CCC=O"                                                  
GEB SMILES           "OpenEye OEToolkits" 2.0.6 "C1CN(CCN1CCC=O)CCC=O"                                                  
# 
_pdbx_chem_comp_identifier.comp_id           GEB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "3-[4-(3-oxidanylidenepropyl)piperazin-1-yl]propanal" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GEB "Create component" 2018-09-13 EBI  
GEB "Initial release"  2019-02-06 RCSB 
GEB "Modify PCM"       2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 GEB LYS None Crosslinker "Amino-acid side chain" "Any position" C32 NZ ? ? 
2 GEB LYS None Crosslinker "Amino-acid side chain" "Any position" C39 NZ ? ? 
# 
