data_GFB
# 
_chem_comp.id                                    GFB 
_chem_comp.name                                  "GUANOSINE-5'-DIPHOSPHATE-BETA-L-FUCOPYRANOSE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H25 N5 O15 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-08-17 
_chem_comp.pdbx_modified_date                    2014-09-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        589.342 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     GFB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ZY5 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
GFB O1P    O1P    O 0 1 N N N -12.884 -27.017 16.536 0.654  1.823  2.609  O1P    GFB 1  
GFB P      P      P 0 1 N N N -11.382 -26.857 16.482 1.029  1.967  1.049  P      GFB 2  
GFB O3P    O3P    O 0 1 N N N -10.829 -26.213 15.237 1.503  3.344  0.782  O3P    GFB 3  
GFB O2P    O2P    O 0 1 N N N -10.967 -26.010 17.813 2.191  0.918  0.677  O2P    GFB 4  
GFB "O5'"  "O5'"  O 0 1 N N N -10.693 -28.268 16.747 -0.274 1.665  0.154  "O5'"  GFB 5  
GFB P1     P1     P 0 1 N N N -9.557  -25.824 18.583 3.775  0.857  0.959  P1     GFB 6  
GFB "C5'"  "C5'"  C 0 1 N N N -11.180 -29.032 17.850 -1.442 2.489  0.175  "C5'"  GFB 7  
GFB "C4'"  "C4'"  C 0 1 N N R -12.031 -30.144 17.241 -2.485 1.919  -0.788 "C4'"  GFB 8  
GFB "O4'"  "O4'"  O 0 1 N N N -11.942 -31.309 18.072 -2.951 0.647  -0.308 "O4'"  GFB 9  
GFB "C3'"  "C3'"  C 0 1 N N S -13.507 -29.788 17.158 -3.705 2.859  -0.854 "C3'"  GFB 10 
GFB "C1'"  "C1'"  C 0 1 N N R -13.246 -31.799 18.393 -4.344 0.543  -0.674 "C1'"  GFB 11 
GFB "O3'"  "O3'"  O 0 1 N N N -13.875 -29.167 15.910 -3.901 3.332  -2.188 "O3'"  GFB 12 
GFB "C2'"  "C2'"  C 0 1 N N R -14.177 -31.132 17.393 -4.893 1.968  -0.415 "C2'"  GFB 13 
GFB "O2'"  "O2'"  O 0 1 N N N -14.236 -31.910 16.192 -6.047 2.224  -1.220 "O2'"  GFB 14 
GFB N9     N9     N 0 1 Y N N -13.695 -31.303 19.719 -5.028 -0.436 0.175  N9     GFB 15 
GFB C8     C8     C 0 1 Y N N -13.113 -30.413 20.547 -4.645 -0.828 1.425  C8     GFB 16 
GFB C4     C4     C 0 1 Y N N -14.860 -31.667 20.249 -6.171 -1.120 -0.137 C4     GFB 17 
GFB N7     N7     N 0 1 Y N N -13.919 -30.225 21.620 -5.482 -1.710 1.887  N7     GFB 18 
GFB C5     C5     C 0 1 Y N N -15.005 -31.010 21.459 -6.451 -1.934 0.966  C5     GFB 19 
GFB C6     C6     C 0 1 N N N -16.153 -31.256 22.199 -7.595 -2.765 0.921  C6     GFB 20 
GFB O6     O6     O 0 1 N N N -16.303 -30.672 23.296 -7.877 -3.491 1.860  O6     GFB 21 
GFB N1     N1     N 0 1 N N N -17.086 -32.107 21.707 -8.367 -2.735 -0.187 N1     GFB 22 
GFB C2     C2     C 0 1 N N N -16.907 -32.724 20.519 -8.043 -1.920 -1.230 C2     GFB 23 
GFB N2     N2     N 0 1 N N N -17.798 -33.592 19.997 -8.846 -1.909 -2.343 N2     GFB 24 
GFB N3     N3     N 0 1 N N N -15.809 -32.510 19.793 -6.983 -1.143 -1.201 N3     GFB 25 
GFB C1     C1     C 0 1 N N R -7.346  -26.108 17.135 5.883  -0.340 -0.166 C1     GFB 26 
GFB C2A    C2A    C 0 1 N N S -7.594  -26.092 15.615 6.273  -0.697 -1.603 C2A    GFB 27 
GFB O1     O1     O 0 1 N N N -8.501  -26.673 17.731 4.469  -0.149 -0.090 O1     GFB 28 
GFB O5     O5     O 0 1 N N N -6.307  -27.013 17.495 6.268  -1.403 0.709  O5     GFB 29 
GFB C3     C3     C 0 1 N N R -6.326  -25.840 14.804 7.781  -0.959 -1.664 C3     GFB 30 
GFB O2     O2     O 0 1 N N N -8.536  -25.069 15.304 5.941  0.388  -2.471 O2     GFB 31 
GFB C4A    C4A    C 0 1 N N S -5.209  -26.767 15.289 8.136  -2.071 -0.672 C4A    GFB 32 
GFB O3     O3     O 0 1 N N N -6.600  -26.038 13.391 8.143  -1.363 -2.986 O3     GFB 33 
GFB C5A    C5A    C 0 1 N N S -5.056  -26.800 16.816 7.674  -1.661 0.729  C5A    GFB 34 
GFB O4     O4     O 0 1 N N N -5.495  -28.097 14.838 7.479  -3.281 -1.056 O4     GFB 35 
GFB C6A    C6A    C 0 1 N N N -4.113  -27.923 17.227 7.970  -2.792 1.716  C6A    GFB 36 
GFB O1X    O1X    O 0 1 N N N -9.263  -24.339 18.582 4.357  2.209  0.804  O1X    GFB 37 
GFB O2X    O2X    O 0 1 N N N -9.650  -26.488 19.929 4.034  0.330  2.459  O2X    GFB 38 
GFB "H5'"  "H5'"  H 0 1 N N N -11.791 -28.402 18.513 -1.853 2.511  1.184  "H5'"  GFB 39 
GFB "H5'A" "H5'A" H 0 0 N N N -10.342 -29.459 18.420 -1.178 3.501  -0.132 "H5'A" GFB 40 
GFB "H4'"  "H4'"  H 0 1 N N N -11.658 -30.367 16.231 -2.050 1.804  -1.781 "H4'"  GFB 41 
GFB "H3'"  "H3'"  H 0 1 N N N -13.756 -29.118 17.994 -3.580 3.695  -0.166 "H3'"  GFB 42 
GFB "H1'"  "H1'"  H 0 1 N N N -13.313 -32.895 18.326 -4.445 0.274  -1.725 "H1'"  GFB 43 
GFB "HO3'" "HO3'" H 0 0 N N N -14.804 -28.968 15.916 -4.656 3.928  -2.287 "HO3'" GFB 44 
GFB "H2'"  "H2'"  H 0 1 N N N -15.174 -30.990 17.835 -5.118 2.113  0.642  "H2'"  GFB 45 
GFB "HO2'" "HO2'" H 0 0 N N N -14.659 -32.741 16.373 -6.374 3.132  -1.160 "HO2'" GFB 46 
GFB H8     H8     H 0 1 N N N -12.161 -29.929 20.383 -3.776 -0.461 1.952  H8     GFB 47 
GFB HN1    HN1    H 0 1 N N N -17.920 -32.281 22.231 -9.156 -3.296 -0.241 HN1    GFB 48 
GFB H1     H1     H 0 1 N N N -7.149  -25.089 17.499 6.390  0.577  0.131  H1     GFB 49 
GFB H2A    H2A    H 0 1 N N N -8.002  -27.071 15.324 5.735  -1.592 -1.914 H2A    GFB 50 
GFB H3     H3     H 0 1 N N N -6.009  -24.800 14.971 8.320  -0.049 -1.400 H3     GFB 51 
GFB HO2    HO2    H 0 1 N N N -9.409  -25.442 15.267 5.001  0.612  -2.479 HO2    GFB 52 
GFB H4A    H4A    H 0 1 N N N -4.259  -26.424 14.853 9.215  -2.226 -0.669 H4A    GFB 53 
GFB HO3    HO3    H 0 1 N N N -5.809  -25.880 12.889 7.940  -0.706 -3.667 HO3    GFB 54 
GFB H5A    H5A    H 0 1 N N N -4.620  -25.844 17.140 8.204  -0.761 1.038  H5A    GFB 55 
GFB HO4    HO4    H 0 1 N N N -4.810  -28.686 15.131 7.660  -4.029 -0.470 HO4    GFB 56 
GFB H6A    H6A    H 0 1 N N N -3.144  -27.791 16.724 7.641  -2.500 2.713  H6A    GFB 57 
GFB H6AA   H6AA   H 0 0 N N N -3.967  -27.899 18.317 7.439  -3.692 1.407  H6AA   GFB 58 
GFB H6AB   H6AB   H 0 0 N N N -4.547  -28.891 16.937 9.042  -2.990 1.730  H6AB   GFB 59 
GFB HN2    HN2    H 0 1 N N N -17.613 -34.030 19.117 -8.628 -1.334 -3.093 HN2    GFB 60 
GFB HN2A   HN2A   H 0 0 N N N -18.643 -33.798 20.490 -9.632 -2.477 -2.379 HN2A   GFB 61 
GFB HO1P   HO1P   H 0 0 N N N -13.269 -26.671 15.739 0.335  0.944  2.856  HO1P   GFB 62 
GFB HO2X   HO2X   H 0 0 N N N -9.503  -25.844 20.611 3.679  -0.553 2.632  HO2X   GFB 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
GFB P      O1P    SING N N 1  
GFB O1P    HO1P   SING N N 2  
GFB O3P    P      DOUB N N 3  
GFB P      "O5'"  SING N N 4  
GFB P      O2P    SING N N 5  
GFB O2P    P1     SING N N 6  
GFB "O5'"  "C5'"  SING N N 7  
GFB O1     P1     SING N N 8  
GFB O1X    P1     DOUB N N 9  
GFB P1     O2X    SING N N 10 
GFB "C4'"  "C5'"  SING N N 11 
GFB "C5'"  "H5'A" SING N N 12 
GFB "C5'"  "H5'"  SING N N 13 
GFB "H4'"  "C4'"  SING N N 14 
GFB "C3'"  "C4'"  SING N N 15 
GFB "C4'"  "O4'"  SING N N 16 
GFB "O4'"  "C1'"  SING N N 17 
GFB "O3'"  "C3'"  SING N N 18 
GFB "C3'"  "C2'"  SING N N 19 
GFB "C3'"  "H3'"  SING N N 20 
GFB "C2'"  "C1'"  SING N N 21 
GFB "H1'"  "C1'"  SING N N 22 
GFB "C1'"  N9     SING N N 23 
GFB "HO3'" "O3'"  SING N N 24 
GFB "O2'"  "C2'"  SING N N 25 
GFB "C2'"  "H2'"  SING N N 26 
GFB "O2'"  "HO2'" SING N N 27 
GFB N9     C4     SING Y N 28 
GFB N9     C8     SING Y N 29 
GFB H8     C8     SING N N 30 
GFB C8     N7     DOUB Y N 31 
GFB N3     C4     SING N N 32 
GFB C4     C5     DOUB Y N 33 
GFB C5     N7     SING Y N 34 
GFB C5     C6     SING N N 35 
GFB N1     C6     SING N N 36 
GFB C6     O6     DOUB N N 37 
GFB C2     N1     SING N N 38 
GFB N1     HN1    SING N N 39 
GFB N3     C2     DOUB N N 40 
GFB N2     C2     SING N N 41 
GFB HN2    N2     SING N N 42 
GFB N2     HN2A   SING N N 43 
GFB C2A    C1     SING N N 44 
GFB C1     O5     SING N N 45 
GFB C1     H1     SING N N 46 
GFB C1     O1     SING N N 47 
GFB C3     C2A    SING N N 48 
GFB O2     C2A    SING N N 49 
GFB H2A    C2A    SING N N 50 
GFB C5A    O5     SING N N 51 
GFB O3     C3     SING N N 52 
GFB C3     H3     SING N N 53 
GFB C3     C4A    SING N N 54 
GFB HO2    O2     SING N N 55 
GFB H4A    C4A    SING N N 56 
GFB O4     C4A    SING N N 57 
GFB C4A    C5A    SING N N 58 
GFB HO3    O3     SING N N 59 
GFB C5A    H5A    SING N N 60 
GFB C5A    C6A    SING N N 61 
GFB O4     HO4    SING N N 62 
GFB H6A    C6A    SING N N 63 
GFB H6AA   C6A    SING N N 64 
GFB C6A    H6AB   SING N N 65 
GFB O2X    HO2X   SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
GFB SMILES           ACDLabs              12.01 "O=C4NC(=Nc1c4ncn1C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3O)C)O)O)N" 
GFB InChI            InChI                1.03  
"InChI=1S/C16H25N5O15P2/c1-4-7(22)9(24)11(26)15(33-4)35-38(30,31)36-37(28,29)32-2-5-8(23)10(25)14(34-5)21-3-18-6-12(21)19-16(17)20-13(6)27/h3-5,7-11,14-15,22-26H,2H2,1H3,(H,28,29)(H,30,31)(H3,17,19,20,27)/t4-,5+,7+,8+,9+,10+,11-,14+,15+/m0/s1" 
GFB InChIKey         InChI                1.03  LQEBEXMHBLQMDB-JGQUBWHWSA-N 
GFB SMILES_CANONICAL CACTVS               3.385 "C[C@@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N)[C@@H](O)[C@H](O)[C@@H]1O" 
GFB SMILES           CACTVS               3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N)[CH](O)[CH](O)[CH]1O" 
GFB SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)O" 
GFB SMILES           "OpenEye OEToolkits" 1.9.2 "CC1C(C(C(C(O1)OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
GFB "SYSTEMATIC NAME" ACDLabs              12.01 
"[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4R,5S,6S)-3,4,5-trihydroxy-6-methyltetrahydro-2H-pyran-2-yl dihydrogen diphosphate (non-preferred name)" 
GFB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,4R,5R)-5-(2-azanyl-6-oxidanylidene-1H-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5S,6S)-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl] hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
GFB "Create component"  2011-08-17 EBI  
GFB "Modify descriptor" 2014-09-05 RCSB 
# 
