data_T8B
#

_chem_comp.id                                   T8B
_chem_comp.name                                 Thermorubin
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C32 H24 O12"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "{12-hydroxy-9-[(2Z)-3-hydroxy-3-(2-hydroxyphenyl)prop-2-enoyl]-10,11-dimethoxy-3-(methoxycarbonyl)-1-oxo-1H-naphtho[2,3-g]isochromen-8-yl}acetic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2011-12-09
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       600.526
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    T8B
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3UXQ
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T8B  O1   O1   O  0  1  N  N  N  154.217  -128.685  -198.584  -4.566   4.688   0.321  O1   T8B   1  
T8B  C1   C1   C  0  1  N  N  N  154.263  -129.670  -199.521  -3.565   3.800   0.421  C1   T8B   2  
T8B  O2   O2   O  0  1  N  N  N  153.298  -129.982  -200.205  -2.885   3.765   1.419  O2   T8B   3  
T8B  C2   C2   C  0  1  N  N  N  155.634  -130.307  -199.599  -3.289   2.845  -0.713  C2   T8B   4  
T8B  C3   C3   C  0  1  Y  N  N  155.710  -131.429  -200.583  -2.123   1.961  -0.352  C3   T8B   5  
T8B  C4   C4   C  0  1  Y  N  N  156.607  -131.329  -201.647  -0.876   2.325  -0.730  C4   T8B   6  
T8B  C5   C5   C  0  1  Y  N  N  156.713  -132.359  -202.596   0.232   1.511  -0.399  C5   T8B   7  
T8B  C6   C6   C  0  1  Y  N  N  157.612  -132.273  -203.674   1.520   1.871  -0.786  C6   T8B   8  
T8B  C7   C7   C  0  1  Y  N  N  157.719  -133.304  -204.624   2.604   1.054  -0.449  C7   T8B   9  
T8B  C8   C8   C  0  1  Y  N  N  158.617  -133.215  -205.699   3.908   1.418  -0.844  C8   T8B  10  
T8B  C9   C9   C  0  1  Y  N  N  158.717  -134.249  -206.640   4.971   0.611  -0.510  C9   T8B  11  
T8B  C10  C10  C  0  1  N  N  N  159.648  -134.154  -207.754   6.356   0.927  -0.880  C10  T8B  12  
T8B  C11  C11  C  0  1  N  N  N  159.695  -135.174  -208.616   7.302  -0.035  -0.730  C11  T8B  13  
T8B  C12  C12  C  0  1  N  N  N  160.625  -135.098  -209.743   8.697   0.285  -1.066  C12  T8B  14  
T8B  O3   O3   O  0  1  N  N  N  161.371  -134.150  -209.945   8.985   1.395  -1.470  O3   T8B  15  
T8B  O4   O4   O  0  1  N  N  N  160.507  -136.230  -210.484   9.656  -0.652  -0.926  O4   T8B  16  
T8B  C13  C13  C  0  1  N  N  N  161.360  -136.307  -211.631  11.011  -0.266  -1.276  C13  T8B  17  
T8B  O5   O5   O  0  1  N  N  N  158.899  -136.325  -208.514   7.009  -1.278  -0.283  O5   T8B  18  
T8B  C14  C14  C  0  1  N  N  N  158.000  -136.486  -207.495   5.953  -1.429   0.553  C14  T8B  19  
T8B  O6   O6   O  0  1  N  N  N  157.320  -137.500  -207.427   5.994  -2.186   1.504  O6   T8B  20  
T8B  C15  C15  C  0  1  Y  N  N  157.910  -135.381  -206.507   4.755  -0.631   0.253  C15  T8B  21  
T8B  C16  C16  C  0  1  Y  N  N  157.012  -135.482  -205.441   3.484  -1.004   0.651  C16  T8B  22  
T8B  O7   O7   O  0  1  N  N  N  156.235  -136.604  -205.333   3.293  -2.144   1.355  O7   T8B  23  
T8B  C17  C17  C  0  1  Y  N  N  156.906  -134.450  -204.490   2.386  -0.180   0.312  C17  T8B  24  
T8B  C18  C18  C  0  1  Y  N  N  156.008  -134.536  -203.415   1.089  -0.544   0.702  C18  T8B  25  
T8B  O8   O8   O  0  1  N  N  N  155.217  -135.647  -203.280   0.884  -1.682   1.407  O8   T8B  26  
T8B  C19  C19  C  0  1  N  N  N  155.667  -136.647  -202.371   0.892  -1.573   2.832  C19  T8B  27  
T8B  C20  C20  C  0  1  Y  N  N  155.902  -133.506  -202.467   0.008   0.278   0.360  C20  T8B  28  
T8B  C21  C21  C  0  1  Y  N  N  155.003  -133.593  -201.387  -1.309  -0.063   0.735  C21  T8B  29  
T8B  O9   O9   O  0  1  N  N  N  154.189  -134.675  -201.201  -1.550  -1.197   1.435  O9   T8B  30  
T8B  C22  C22  C  0  1  N  N  N  154.702  -135.738  -200.408  -1.857  -2.372   0.682  C22  T8B  31  
T8B  C23  C23  C  0  1  Y  N  N  154.911  -132.560  -200.454  -2.358   0.780   0.376  C23  T8B  32  
T8B  C24  C24  C  0  1  N  N  N  153.973  -132.659  -199.337  -3.735   0.432   0.770  C24  T8B  33  
T8B  O10  O10  O  0  1  N  N  N  152.760  -132.507  -199.522  -4.158   0.763   1.865  O10  T8B  34  
T8B  C25  C25  C  0  1  N  N  N  154.518  -132.985  -197.975  -4.563  -0.285  -0.119  C25  T8B  35  
T8B  C26  C26  C  0  1  N  N  N  153.760  -133.110  -196.870  -5.864  -0.527   0.207  C26  T8B  36  
T8B  O11  O11  O  0  1  N  N  N  152.392  -132.923  -196.824  -6.392   0.016   1.327  O11  T8B  37  
T8B  C27  C27  C  0  1  Y  N  N  154.357  -133.438  -195.559  -6.694  -1.380  -0.660  C27  T8B  38  
T8B  C28  C28  C  0  1  Y  N  N  153.510  -133.609  -194.476  -6.284  -2.682  -0.966  C28  T8B  39  
T8B  C29  C29  C  0  1  Y  N  N  154.051  -133.920  -193.230  -7.065  -3.474  -1.778  C29  T8B  40  
T8B  C30  C30  C  0  1  Y  N  N  155.432  -134.053  -193.082  -8.256  -2.989  -2.293  C30  T8B  41  
T8B  C31  C31  C  0  1  Y  N  N  156.271  -133.877  -194.182  -8.673  -1.705  -1.999  C31  T8B  42  
T8B  C32  C32  C  0  1  Y  N  N  155.729  -133.568  -195.430  -7.903  -0.895  -1.179  C32  T8B  43  
T8B  O12  O12  O  0  1  N  N  N  156.573  -133.402  -196.488  -8.314   0.364  -0.884  O12  T8B  44  
T8B  H1   H1   H  0  1  N  N  N  153.345  -128.308  -198.563  -4.705   5.280   1.073  H1   T8B  45  
T8B  H2   H2   H  0  1  N  N  N  155.895  -130.697  -198.604  -4.170   2.230  -0.892  H2   T8B  46  
T8B  H3   H3   H  0  1  N  N  N  156.361  -129.536  -199.892  -3.050   3.411  -1.614  H3   T8B  47  
T8B  H4   H4   H  0  1  N  N  N  157.227  -130.450  -201.742  -0.727   3.238  -1.287  H4   T8B  48  
T8B  H5   H5   H  0  1  N  N  N  158.234  -131.396  -203.774   1.682   2.780  -1.345  H5   T8B  49  
T8B  H6   H6   H  0  1  N  N  N  159.239  -132.338  -205.802   4.072   2.326  -1.406  H6   T8B  50  
T8B  H7   H7   H  0  1  N  N  N  160.280  -133.288  -207.880   6.616   1.903  -1.263  H7   T8B  51  
T8B  H8   H8   H  0  1  N  N  N  161.185  -137.258  -212.156  11.682  -1.110  -1.118  H8   T8B  52  
T8B  H9   H9   H  0  1  N  N  N  161.140  -135.468  -212.308  11.044   0.033  -2.324  H9   T8B  53  
T8B  H10  H10  H  0  1  N  N  N  162.411  -136.254  -211.310  11.324   0.570  -0.650  H10  T8B  54  
T8B  H11  H11  H  0  1  N  N  N  156.431  -137.196  -206.050   3.342  -2.026   2.314  H11  T8B  55  
T8B  H12  H12  H  0  1  N  N  N  154.948  -137.479  -202.355   1.822  -1.107   3.156  H12  T8B  56  
T8B  H13  H13  H  0  1  N  N  N  156.651  -137.019  -202.693   0.049  -0.962   3.154  H13  T8B  57  
T8B  H14  H14  H  0  1  N  N  N  155.750  -136.215  -201.363   0.809  -2.566   3.273  H14  T8B  58  
T8B  H15  H15  H  0  1  N  N  N  153.952  -136.540  -200.339  -2.114  -3.183   1.363  H15  T8B  59  
T8B  H16  H16  H  0  1  N  N  N  155.618  -136.132  -200.872  -2.701  -2.170   0.022  H16  T8B  60  
T8B  H17  H17  H  0  1  N  N  N  154.933  -135.364  -199.400  -0.991  -2.658   0.086  H17  T8B  61  
T8B  H18  H18  H  0  1  N  N  N  155.584  -133.128  -197.877  -4.167  -0.641  -1.058  H18  T8B  62  
T8B  H19  H19  H  0  1  N  N  N  152.069  -132.726  -197.696  -7.320  -0.212   1.475  H19  T8B  63  
T8B  H20  H20  H  0  1  N  N  N  152.442  -133.502  -194.596  -5.356  -3.065  -0.567  H20  T8B  64  
T8B  H21  H21  H  0  1  N  N  N  153.401  -134.058  -192.379  -6.748  -4.479  -2.014  H21  T8B  65  
T8B  H22  H22  H  0  1  N  N  N  155.851  -134.292  -192.116  -8.862  -3.617  -2.929  H22  T8B  66  
T8B  H23  H23  H  0  1  N  N  N  157.340  -133.980  -194.068  -9.603  -1.334  -2.404  H23  T8B  67  
T8B  H24  H24  H  0  1  N  N  N  157.470  -133.531  -196.202  -8.071   1.023  -1.549  H24  T8B  68  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T8B  C13  O4   SING  N  N   1  
T8B  O4   C12  SING  N  N   2  
T8B  O3   C12  DOUB  N  N   3  
T8B  C12  C11  SING  N  N   4  
T8B  C11  O5   SING  N  N   5  
T8B  C11  C10  DOUB  N  N   6  
T8B  O5   C14  SING  N  N   7  
T8B  C10  C9   SING  N  N   8  
T8B  C14  O6   DOUB  N  N   9  
T8B  C14  C15  SING  N  N  10  
T8B  C9   C15  SING  Y  N  11  
T8B  C9   C8   DOUB  Y  N  12  
T8B  C15  C16  DOUB  Y  N  13  
T8B  C8   C7   SING  Y  N  14  
T8B  C16  O7   SING  N  N  15  
T8B  C16  C17  SING  Y  N  16  
T8B  C7   C17  DOUB  Y  N  17  
T8B  C7   C6   SING  Y  N  18  
T8B  C17  C18  SING  Y  N  19  
T8B  C6   C5   DOUB  Y  N  20  
T8B  C18  O8   SING  N  N  21  
T8B  C18  C20  DOUB  Y  N  22  
T8B  O8   C19  SING  N  N  23  
T8B  C5   C20  SING  Y  N  24  
T8B  C5   C4   SING  Y  N  25  
T8B  C20  C21  SING  Y  N  26  
T8B  C4   C3   DOUB  Y  N  27  
T8B  C21  O9   SING  N  N  28  
T8B  C21  C23  DOUB  Y  N  29  
T8B  O9   C22  SING  N  N  30  
T8B  C3   C23  SING  Y  N  31  
T8B  C3   C2   SING  N  N  32  
T8B  C23  C24  SING  N  N  33  
T8B  O2   C1   DOUB  N  N  34  
T8B  C2   C1   SING  N  N  35  
T8B  O10  C24  DOUB  N  N  36  
T8B  C1   O1   SING  N  N  37  
T8B  C24  C25  SING  N  N  38  
T8B  C25  C26  DOUB  N  Z  39  
T8B  C26  O11  SING  N  N  40  
T8B  C26  C27  SING  N  N  41  
T8B  O12  C32  SING  N  N  42  
T8B  C27  C32  DOUB  Y  N  43  
T8B  C27  C28  SING  Y  N  44  
T8B  C32  C31  SING  Y  N  45  
T8B  C28  C29  DOUB  Y  N  46  
T8B  C31  C30  DOUB  Y  N  47  
T8B  C29  C30  SING  Y  N  48  
T8B  O1   H1   SING  N  N  49  
T8B  C2   H2   SING  N  N  50  
T8B  C2   H3   SING  N  N  51  
T8B  C4   H4   SING  N  N  52  
T8B  C6   H5   SING  N  N  53  
T8B  C8   H6   SING  N  N  54  
T8B  C10  H7   SING  N  N  55  
T8B  C13  H8   SING  N  N  56  
T8B  C13  H9   SING  N  N  57  
T8B  C13  H10  SING  N  N  58  
T8B  O7   H11  SING  N  N  59  
T8B  C19  H12  SING  N  N  60  
T8B  C19  H13  SING  N  N  61  
T8B  C19  H14  SING  N  N  62  
T8B  C22  H15  SING  N  N  63  
T8B  C22  H16  SING  N  N  64  
T8B  C22  H17  SING  N  N  65  
T8B  C25  H18  SING  N  N  66  
T8B  O11  H19  SING  N  N  67  
T8B  C28  H20  SING  N  N  68  
T8B  C29  H21  SING  N  N  69  
T8B  C30  H22  SING  N  N  70  
T8B  C31  H23  SING  N  N  71  
T8B  O12  H24  SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T8B  SMILES            ACDLabs               12.01  "O=C(OC)C=5OC(=O)c4c(O)c3c(OC)c2c(OC)c(C(=O)\C=C(/O)c1ccccc1O)c(cc2cc3cc4C=5)CC(=O)O"  
T8B  InChI             InChI                 1.03   "InChI=1S/C32H24O12/c1-41-29-24(21(35)13-20(34)18-6-4-5-7-19(18)33)17(12-23(36)37)10-15-8-14-9-16-11-22(31(39)43-3)44-32(40)26(16)28(38)25(14)30(42-2)27(15)29/h4-11,13,33-34,38H,12H2,1-3H3,(H,36,37)/b20-13-"  
T8B  InChIKey          InChI                 1.03   GGEDVBUCHDZLTH-MOSHPQCFSA-N  
T8B  SMILES_CANONICAL  CACTVS                3.370  "COC(=O)C1=Cc2cc3cc4cc(CC(O)=O)c(C(=O)\C=C(/O)c5ccccc5O)c(OC)c4c(OC)c3c(O)c2C(=O)O1"  
T8B  SMILES            CACTVS                3.370  "COC(=O)C1=Cc2cc3cc4cc(CC(O)=O)c(C(=O)C=C(O)c5ccccc5O)c(OC)c4c(OC)c3c(O)c2C(=O)O1"  
T8B  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "COc1c2c(cc3c1c(c(c(c3)CC(=O)O)C(=O)/C=C(/c4ccccc4O)\O)OC)cc5c(c2O)C(=O)OC(=C5)C(=O)OC"  
T8B  SMILES            "OpenEye OEToolkits"  1.7.6  "COc1c2c(cc3c1c(c(c(c3)CC(=O)O)C(=O)C=C(c4ccccc4O)O)OC)cc5c(c2O)C(=O)OC(=C5)C(=O)OC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T8B  "SYSTEMATIC NAME"  ACDLabs               12.01  "{12-hydroxy-9-[(2Z)-3-hydroxy-3-(2-hydroxyphenyl)prop-2-enoyl]-10,11-dimethoxy-3-(methoxycarbonyl)-1-oxo-1H-naphtho[2,3-g]isochromen-8-yl}acetic acid"  
T8B  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "2-[9-[(Z)-3-(2-hydroxyphenyl)-3-oxidanyl-prop-2-enoyl]-10,11-dimethoxy-3-methoxycarbonyl-12-oxidanyl-1-oxidanylidene-naphtho[3,2-g]isochromen-8-yl]ethanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T8B  "Create component"  2011-12-09  RCSB  
T8B  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     T8B
_pdbx_chem_comp_synonyms.name        "{12-hydroxy-9-[(2Z)-3-hydroxy-3-(2-hydroxyphenyl)prop-2-enoyl]-10,11-dimethoxy-3-(methoxycarbonyl)-1-oxo-1H-naphtho[2,3-g]isochromen-8-yl}acetic acid"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
