data_V3B
# 
_chem_comp.id                                    V3B 
_chem_comp.name                                  "4-(4-methanoylphenyl)carbonyl-~{N},~{N}-dimethyl-piperazine-1-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H19 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2021-04-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        289.330 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     V3B 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7O5G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
V3B C01 C1  C 0 1 N N N N N N -10.764 14.433 0.522  -3.139 -2.428 0.869  C01 V3B 1  
V3B C03 C2  C 0 1 N N N N N N -12.513 16.176 0.804  -3.906 -0.270 0.038  C03 V3B 2  
V3B C05 C3  C 0 1 N N N N N N -14.167 17.925 1.540  -2.510 1.680  0.531  C05 V3B 3  
V3B C06 C4  C 0 1 N N N N N N -14.179 19.394 1.130  -1.472 2.224  -0.458 C06 V3B 4  
V3B C08 C5  C 0 1 N N N N N N -15.821 20.911 -0.151 0.933  1.869  -0.169 C08 V3B 5  
V3B C09 C6  C 0 1 Y N N N N N -16.863 21.054 -1.282 2.103  0.970  -0.041 C09 V3B 6  
V3B C10 C7  C 0 1 Y N N N N N -16.680 21.930 -2.341 2.328  -0.021 -0.998 C10 V3B 7  
V3B C11 C8  C 0 1 Y N N N N N -17.658 22.019 -3.326 3.419  -0.855 -0.883 C11 V3B 8  
V3B C12 C9  C 0 1 Y N N N N N -18.805 21.244 -3.241 4.301  -0.707 0.191  C12 V3B 9  
V3B C13 C10 C 0 1 Y N N N N N -18.992 20.380 -2.180 4.075  0.287  1.148  C13 V3B 10 
V3B C14 C11 C 0 1 Y N N N N N -18.021 20.295 -1.199 2.983  1.119  1.032  C14 V3B 11 
V3B C15 C12 C 0 1 N N N N N N -19.892 21.326 -4.306 5.468  -1.598 0.315  C15 V3B 12 
V3B C17 C13 C 0 1 N N N N N N -15.383 18.417 -0.725 -0.457 -0.084 -0.664 C17 V3B 13 
V3B C18 C14 C 0 1 N N N N N N -14.189 17.460 -0.807 -1.502 -0.632 0.327  C18 V3B 14 
V3B C20 C15 C 0 1 N N N N N N -11.947 15.164 -1.520 -5.355 -2.191 -0.343 C20 V3B 15 
V3B N02 N1  N 0 1 N N N N N N -11.771 15.280 -0.087 -4.127 -1.591 0.184  N02 V3B 16 
V3B N04 N2  N 0 1 N N N N N N -13.573 17.133 0.478  -2.684 0.241  0.289  N04 V3B 17 
V3B N07 N3  N 0 1 N N N N N N -15.156 19.617 0.079  -0.287 1.355  -0.421 N07 V3B 18 
V3B O16 O1  O 0 1 N N N N N N -15.578 21.842 0.544  1.073  3.070  -0.046 O16 V3B 19 
V3B O19 O2  O 0 1 N N N N N N -12.218 16.124 1.949  -4.808 0.462  -0.321 O19 V3B 20 
V3B H1  H1  H 0 1 N N N N N N -10.734 14.620 1.606  -2.472 -2.879 0.134  H1  V3B 21 
V3B H2  H2  H 0 1 N N N N N N -11.013 13.377 0.339  -2.559 -1.814 1.558  H2  V3B 22 
V3B H3  H3  H 0 1 N N N N N N -9.781  14.659 0.084  -3.651 -3.213 1.425  H3  V3B 23 
V3B H4  H4  H 0 1 N N N N N N -15.198 17.585 1.718  -2.162 1.840  1.551  H4  V3B 24 
V3B H5  H5  H 0 1 N N N N N N -13.577 17.806 2.461  -3.460 2.193  0.383  H5  V3B 25 
V3B H6  H6  H 0 1 N N N N N N -13.181 19.676 0.763  -1.891 2.229  -1.464 H6  V3B 26 
V3B H7  H7  H 0 1 N N N N N N -14.437 20.012 2.003  -1.193 3.239  -0.174 H7  V3B 27 
V3B H8  H8  H 0 1 N N N N N N -15.788 22.536 -2.400 1.646  -0.135 -1.828 H8  V3B 28 
V3B H9  H9  H 0 1 N N N N N N -17.524 22.693 -4.159 3.592  -1.622 -1.623 H9  V3B 29 
V3B H10 H10 H 0 1 N N N N N N -19.886 19.778 -2.117 4.755  0.401  1.979  H10 V3B 30 
V3B H11 H11 H 0 1 N N N N N N -18.166 19.631 -0.360 2.810  1.889  1.769  H11 V3B 31 
V3B H12 H12 H 0 1 N N N N N N -20.932 21.118 -4.100 6.149  -1.484 1.145  H12 V3B 32 
V3B H15 H15 H 0 1 N N N N N N -15.638 18.734 -1.747 0.494  -0.595 -0.514 H15 V3B 33 
V3B H16 H16 H 0 1 N N N N N N -16.231 17.869 -0.289 -0.802 -0.245 -1.686 H16 V3B 34 
V3B H17 H17 H 0 1 N N N N N N -14.533 16.523 -1.269 -1.782 -1.645 0.041  H17 V3B 35 
V3B H18 H18 H 0 1 N N N N N N -13.422 17.924 -1.445 -1.084 -0.636 1.334  H18 V3B 36 
V3B H19 H19 H 0 1 N N N N N N -12.735 15.856 -1.850 -6.131 -2.161 0.422  H19 V3B 37 
V3B H20 H20 H 0 1 N N N N N N -11.003 15.415 -2.027 -5.687 -1.631 -1.218 H20 V3B 38 
V3B H21 H21 H 0 1 N N N N N N -12.236 14.133 -1.772 -5.162 -3.226 -0.625 H21 V3B 39 
V3B O1  O3  O 0 1 N Y N N N N -19.419 21.701 -5.600 5.664  -2.460 -0.515 O1  V3B 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
V3B C15 C12 SING N N 1  
V3B C11 C12 DOUB Y N 2  
V3B C11 C10 SING Y N 3  
V3B C12 C13 SING Y N 4  
V3B C10 C09 DOUB Y N 5  
V3B C13 C14 DOUB Y N 6  
V3B C20 N02 SING N N 7  
V3B C09 C14 SING Y N 8  
V3B C09 C08 SING N N 9  
V3B C18 C17 SING N N 10 
V3B C18 N04 SING N N 11 
V3B C17 N07 SING N N 12 
V3B C08 N07 SING N N 13 
V3B C08 O16 DOUB N N 14 
V3B N02 C01 SING N N 15 
V3B N02 C03 SING N N 16 
V3B N07 C06 SING N N 17 
V3B N04 C03 SING N N 18 
V3B N04 C05 SING N N 19 
V3B C03 O19 DOUB N N 20 
V3B C06 C05 SING N N 21 
V3B C01 H1  SING N N 22 
V3B C01 H2  SING N N 23 
V3B C01 H3  SING N N 24 
V3B C05 H4  SING N N 25 
V3B C05 H5  SING N N 26 
V3B C06 H6  SING N N 27 
V3B C06 H7  SING N N 28 
V3B C10 H8  SING N N 29 
V3B C11 H9  SING N N 30 
V3B C13 H10 SING N N 31 
V3B C14 H11 SING N N 32 
V3B C15 H12 SING N N 33 
V3B C17 H15 SING N N 34 
V3B C17 H16 SING N N 35 
V3B C18 H17 SING N N 36 
V3B C18 H18 SING N N 37 
V3B C20 H19 SING N N 38 
V3B C20 H20 SING N N 39 
V3B C20 H21 SING N N 40 
V3B C15 O1  DOUB N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
V3B InChI            InChI                1.03  "InChI=1S/C15H19N3O3/c1-16(2)15(21)18-9-7-17(8-10-18)14(20)13-5-3-12(11-19)4-6-13/h3-6,11H,7-10H2,1-2H3" 
V3B InChIKey         InChI                1.03  YLCTXUGWTWGVFY-UHFFFAOYSA-N                                                                              
V3B SMILES_CANONICAL CACTVS               3.385 "CN(C)C(=O)N1CCN(CC1)C(=O)c2ccc(C=O)cc2"                                                                 
V3B SMILES           CACTVS               3.385 "CN(C)C(=O)N1CCN(CC1)C(=O)c2ccc(C=O)cc2"                                                                 
V3B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)N1CCN(CC1)C(=O)c2ccc(cc2)C=O"                                                                 
V3B SMILES           "OpenEye OEToolkits" 2.0.7 "CN(C)C(=O)N1CCN(CC1)C(=O)c2ccc(cc2)C=O"                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           V3B 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "4-(4-methanoylphenyl)carbonyl-~{N},~{N}-dimethyl-piperazine-1-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
V3B "Create component" 2021-04-08 PDBE 
V3B "Initial release"  2021-06-09 RCSB 
V3B "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            V3B 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C15 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   NZ 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
