data_YNB
# 
_chem_comp.id                                    YNB 
_chem_comp.name                                  "[2-methyl-4-(trifluoromethoxy)phenyl]methyl (8R)-2-(1,4,6,7-tetrahydro-5H-[1,2,3]triazolo[4,5-c]pyridine-5-carbonyl)-6,7-dihydropyrazolo[1,5-a]pyrazine-5(4H)-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H22 F3 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-19 
_chem_comp.pdbx_modified_date                    2024-12-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        505.450 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YNB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7G4H 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YNB C11 C1  C 0 1 N N N N N N -12.217 10.856 53.565 -6.319 2.743  0.856  C11 YNB 1  
YNB C13 C2  C 0 1 N N N N N N -11.523 13.214 54.167 -5.807 0.270  0.998  C13 YNB 2  
YNB C15 C3  C 0 1 Y N N N N N -10.343 11.102 55.012 -7.944 1.119  -0.052 C15 YNB 3  
YNB C19 C4  C 0 1 N N N N N N -13.010 12.725 52.139 -4.123 1.871  0.206  C19 YNB 4  
YNB C21 C5  C 0 1 N N N N N N -14.935 7.231  47.553 1.156  -2.831 -0.325 C21 YNB 5  
YNB C24 C6  C 0 1 N N N N N N -13.902 6.784  45.456 3.457  -2.596 0.263  C24 YNB 6  
YNB C25 C7  C 0 1 Y N N N N N -13.000 5.792  44.750 4.538  -1.546 0.274  C25 YNB 7  
YNB C26 C8  C 0 1 Y N N N N N -12.061 6.332  43.862 5.805  -1.865 0.724  C26 YNB 8  
YNB C27 C9  C 0 1 Y N N N N N -11.197 5.510  43.175 6.798  -0.904 0.736  C27 YNB 9  
YNB C28 C10 C 0 1 Y N N N N N -11.263 4.136  43.357 6.522  0.382  0.296  C28 YNB 10 
YNB N1  N1  N 0 1 N N N N N N -14.431 8.473  47.960 -0.017 -2.358 -0.790 N1  YNB 11 
YNB C2  C11 C 0 1 N N N N N N -13.170 8.972  47.393 -1.202 -3.224 -0.884 C2  YNB 12 
YNB C3  C12 C 0 1 N N N N N N -12.211 9.409  48.529 -2.288 -2.698 0.060  C3  YNB 13 
YNB C4  C13 C 0 1 N N N N N N -15.211 9.437  48.765 -0.156 -0.953 -1.218 C4  YNB 14 
YNB C5  C14 C 0 1 Y N N N N N -14.324 10.263 49.630 -1.473 -0.454 -0.674 C5  YNB 15 
YNB N6  N2  N 0 1 Y N N N N N -12.940 10.291 49.462 -2.419 -1.244 -0.112 N6  YNB 16 
YNB N7  N3  N 0 1 Y N N N N N -12.316 11.214 50.242 -3.424 -0.527 0.242  N7  YNB 17 
YNB C8  C15 C 0 1 Y N N N N N -13.285 11.853 50.975 -3.206 0.741  -0.048 C8  YNB 18 
YNB C9  C16 C 0 1 Y N N N N N -14.718 10.904 50.688 -1.926 0.813  -0.651 C9  YNB 19 
YNB N10 N4  N 0 1 N N N N N N -12.105 12.282 53.141 -5.367 1.638  0.668  N10 YNB 20 
YNB C12 C17 C 0 1 N N N N N N -10.840 10.251 53.933 -7.504 2.557  -0.100 C12 YNB 21 
YNB C14 C18 C 0 1 Y N N N N N -10.651 12.461 55.128 -7.193 0.098  0.430  C14 YNB 22 
YNB N16 N5  N 0 1 Y N N N N N -9.522  10.809 56.097 -9.104 0.574  -0.458 N16 YNB 23 
YNB N17 N6  N 0 1 Y N N N N N -9.347  11.960 56.834 -9.049 -0.696 -0.236 N17 YNB 24 
YNB N18 N7  N 0 1 Y N N N N N -10.002 12.941 56.282 -7.915 -1.008 0.295  N18 YNB 25 
YNB O20 O1  O 0 1 N N N N N N -13.569 13.819 52.223 -3.754 3.011  -0.001 O20 YNB 26 
YNB O22 O2  O 0 1 N N N N N N -16.062 6.849  47.823 1.247  -3.990 0.027  O22 YNB 27 
YNB O23 O3  O 0 1 N N N N N N -14.069 6.435  46.831 2.227  -2.019 -0.249 O23 YNB 28 
YNB C29 C19 C 0 1 Y N N N N N -12.180 3.556  44.233 5.248  0.700  -0.155 C29 YNB 29 
YNB C30 C20 C 0 1 Y N N N N N -13.053 4.405  44.930 4.261  -0.266 -0.170 C30 YNB 30 
YNB O31 O4  O 0 1 N N N N N N -10.388 3.369  42.637 7.496  1.329  0.307  O31 YNB 31 
YNB C32 C21 C 0 1 N N N N N N -10.377 1.983  42.697 7.140  2.632  -0.160 C32 YNB 32 
YNB F33 F1  F 0 1 N N N N N N -9.697  1.437  41.681 6.108  3.146  0.632  F33 YNB 33 
YNB F34 F2  F 0 1 N N N N N N -9.801  1.676  43.845 8.253  3.476  -0.081 F34 YNB 34 
YNB F35 F3  F 0 1 N N N N N N -11.589 1.434  42.672 6.711  2.550  -1.489 F35 YNB 35 
YNB C36 C22 C 0 1 N N N N N N -11.960 7.796  43.633 6.105  -3.262 1.202  C36 YNB 36 
YNB H44 H1  H 0 1 N N N N N N -12.877 10.797 54.443 -6.678 2.743  1.885  H44 YNB 37 
YNB H45 H2  H 0 1 N N N N N N -12.652 10.273 52.740 -5.824 3.691  0.643  H45 YNB 38 
YNB H49 H3  H 0 1 N N N N N N -10.922 13.982 53.658 -5.129 -0.456 0.549  H49 YNB 39 
YNB H48 H4  H 0 1 N N N N N N -12.341 13.697 54.722 -5.829 0.136  2.079  H48 YNB 40 
YNB H52 H5  H 0 1 N N N N N N -14.886 6.789  44.964 3.763  -3.424 -0.376 H52 YNB 41 
YNB H51 H6  H 0 1 N N N N N N -13.454 7.787  45.391 3.293  -2.960 1.277  H51 YNB 42 
YNB H53 H7  H 0 1 N N N N N N -10.470 5.933  42.497 7.788  -1.154 1.088  H53 YNB 43 
YNB H38 H8  H 0 1 N N N N N N -12.695 8.174  46.803 -1.576 -3.220 -1.907 H38 YNB 44 
YNB H37 H9  H 0 1 N N N N N N -13.380 9.834  46.742 -0.933 -4.241 -0.598 H37 YNB 45 
YNB H39 H10 H 0 1 N N N N N N -11.849 8.521  49.068 -3.238 -3.179 -0.175 H39 YNB 46 
YNB H40 H11 H 0 1 N N N N N N -11.356 9.952  48.101 -2.013 -2.920 1.091  H40 YNB 47 
YNB H42 H12 H 0 1 N N N N N N -15.769 10.100 48.088 0.663  -0.359 -0.813 H42 YNB 48 
YNB H41 H13 H 0 1 N N N N N N -15.917 8.884  49.401 -0.157 -0.894 -2.306 H41 YNB 49 
YNB H43 H14 H 0 1 N N N N N N -15.653 10.862 51.228 -1.423 1.696  -1.015 H43 YNB 50 
YNB H46 H15 H 0 1 N N N N N N -10.951 9.212  54.277 -8.328 3.201  0.208  H46 YNB 51 
YNB H47 H16 H 0 1 N N N N N N -10.159 10.280 53.070 -7.199 2.812  -1.115 H47 YNB 52 
YNB H50 H17 H 0 1 N N N N N N -9.126  9.915  56.306 -9.852 1.052  -0.849 H50 YNB 53 
YNB H54 H18 H 0 1 N N N N N N -12.217 2.485  44.371 5.031  1.701  -0.498 H54 YNB 54 
YNB H55 H19 H 0 1 N N N N N N -13.775 3.983  45.614 3.271  -0.020 -0.525 H55 YNB 55 
YNB H58 H20 H 0 1 N N N N N N -11.248 8.232  44.350 6.448  -3.868 0.363  H58 YNB 56 
YNB H56 H21 H 0 1 N N N N N N -11.609 7.983  42.608 6.882  -3.226 1.966  H56 YNB 57 
YNB H57 H22 H 0 1 N N N N N N -12.949 8.258  43.772 5.201  -3.704 1.623  H57 YNB 58 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YNB N1  C2  SING N N 1  
YNB N1  C4  SING N N 2  
YNB N1  C21 SING N N 3  
YNB C2  C3  SING N N 4  
YNB C3  N6  SING N N 5  
YNB C4  C5  SING N N 6  
YNB C5  N6  SING Y N 7  
YNB C5  C9  DOUB Y N 8  
YNB N6  N7  SING Y N 9  
YNB N7  C8  DOUB Y N 10 
YNB C8  C9  SING Y N 11 
YNB C8  C19 SING N N 12 
YNB N10 C11 SING N N 13 
YNB N10 C13 SING N N 14 
YNB N10 C19 SING N N 15 
YNB C11 C12 SING N N 16 
YNB C12 C15 SING N N 17 
YNB C13 C14 SING N N 18 
YNB C14 C15 DOUB Y N 19 
YNB C14 N18 SING Y N 20 
YNB C15 N16 SING Y N 21 
YNB N16 N17 SING Y N 22 
YNB N17 N18 DOUB Y N 23 
YNB C19 O20 DOUB N N 24 
YNB C21 O22 DOUB N N 25 
YNB C21 O23 SING N N 26 
YNB O23 C24 SING N N 27 
YNB C24 C25 SING N N 28 
YNB C25 C26 DOUB Y N 29 
YNB C25 C30 SING Y N 30 
YNB C26 C27 SING Y N 31 
YNB C26 C36 SING N N 32 
YNB C27 C28 DOUB Y N 33 
YNB C28 C29 SING Y N 34 
YNB C28 O31 SING N N 35 
YNB C29 C30 DOUB Y N 36 
YNB O31 C32 SING N N 37 
YNB C32 F33 SING N N 38 
YNB C32 F34 SING N N 39 
YNB C32 F35 SING N N 40 
YNB C11 H44 SING N N 41 
YNB C11 H45 SING N N 42 
YNB C13 H49 SING N N 43 
YNB C13 H48 SING N N 44 
YNB C24 H52 SING N N 45 
YNB C24 H51 SING N N 46 
YNB C27 H53 SING N N 47 
YNB C2  H38 SING N N 48 
YNB C2  H37 SING N N 49 
YNB C3  H39 SING N N 50 
YNB C3  H40 SING N N 51 
YNB C4  H42 SING N N 52 
YNB C4  H41 SING N N 53 
YNB C9  H43 SING N N 54 
YNB C12 H46 SING N N 55 
YNB C12 H47 SING N N 56 
YNB N16 H50 SING N N 57 
YNB C29 H54 SING N N 58 
YNB C30 H55 SING N N 59 
YNB C36 H58 SING N N 60 
YNB C36 H56 SING N N 61 
YNB C36 H57 SING N N 62 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YNB SMILES           ACDLabs              12.01 "FC(F)(F)Oc1ccc(COC(=O)N2Cc3cc(nn3CC2)C(=O)N2CCc3[NH]nnc3C2)c(C)c1"                                                                                                               
YNB InChI            InChI                1.06  "InChI=1S/C22H22F3N7O4/c1-13-8-16(36-22(23,24)25)3-2-14(13)12-35-21(34)31-6-7-32-15(10-31)9-18(28-32)20(33)30-5-4-17-19(11-30)27-29-26-17/h2-3,8-9H,4-7,10-12H2,1H3,(H,26,27,29)" 
YNB InChIKey         InChI                1.06  ADUKTAWVTISOHD-UHFFFAOYSA-N                                                                                                                                                       
YNB SMILES_CANONICAL CACTVS               3.385 "Cc1cc(OC(F)(F)F)ccc1COC(=O)N2CCn3nc(cc3C2)C(=O)N4CCc5[nH]nnc5C4"                                                                                                                 
YNB SMILES           CACTVS               3.385 "Cc1cc(OC(F)(F)F)ccc1COC(=O)N2CCn3nc(cc3C2)C(=O)N4CCc5[nH]nnc5C4"                                                                                                                 
YNB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1COC(=O)N2CCn3c(cc(n3)C(=O)N4CCc5c(nn[nH]5)C4)C2)OC(F)(F)F"                                                                                                             
YNB SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cc(ccc1COC(=O)N2CCn3c(cc(n3)C(=O)N4CCc5c(nn[nH]5)C4)C2)OC(F)(F)F"                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YNB "SYSTEMATIC NAME" ACDLabs              12.01 "[2-methyl-4-(trifluoromethoxy)phenyl]methyl (8R)-2-(1,4,6,7-tetrahydro-5H-[1,2,3]triazolo[4,5-c]pyridine-5-carbonyl)-6,7-dihydropyrazolo[1,5-a]pyrazine-5(4H)-carboxylate" 
YNB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[2-methyl-4-(trifluoromethyloxy)phenyl]methyl 2-(1,4,6,7-tetrahydro-[1,2,3]triazolo[4,5-c]pyridin-5-ylcarbonyl)-6,7-dihydro-4~{H}-pyrazolo[1,5-a]pyrazine-5-carboxylate"   
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YNB "Create component" 2023-06-19 RCSB 
YNB "Initial release"  2024-12-18 RCSB 
# 
