data_YSB
# 
_chem_comp.id                                    YSB 
_chem_comp.name                                  "7-[(1~{S})-1-[5-[2-(1-azanylcyclopropyl)ethyl]-2-oxidanylidene-1,3-oxazol-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H28 F N3 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-06-20 
_chem_comp.pdbx_modified_date                    2024-07-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        541.591 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YSB 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8PGC 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YSB C13  C1  C 0 1 N N S N N N -20.593 -12.020 -25.655 3.122  -2.831 -1.093 C13  YSB 1  
YSB C14  C2  C 0 1 N N N N N N -19.884 -12.394 -24.339 3.611  -4.281 -1.056 C14  YSB 2  
YSB C11  C3  C 0 1 N N N N N N -22.664 -13.229 -24.948 4.762  -0.931 -0.658 C11  YSB 3  
YSB C02  C4  C 0 1 N N N N N N -27.674 -13.602 -23.888 6.519  3.184  0.814  C02  YSB 4  
YSB C03  C5  C 0 1 N N N N N N -27.556 -14.767 -22.893 5.964  4.533  1.276  C03  YSB 5  
YSB C04  C6  C 0 1 N N N N N N -27.978 -15.037 -24.347 6.277  4.301  -0.203 C04  YSB 6  
YSB C05  C7  C 0 1 N N N N N N -26.336 -12.926 -24.320 5.558  1.993  0.798  C05  YSB 7  
YSB C06  C8  C 0 1 N N N N N N -25.214 -13.926 -24.694 6.327  0.723  0.428  C06  YSB 8  
YSB C07  C9  C 0 1 N N N N N N -24.017 -13.092 -25.210 5.381  -0.450 0.412  C07  YSB 9  
YSB C09  C10 C 0 1 N N N N N N -22.880 -11.428 -26.357 4.164  -2.142 1.086  C09  YSB 10 
YSB C15  C11 C 0 1 Y N N N N N -19.966 -12.819 -26.823 1.704  -2.766 -0.587 C15  YSB 11 
YSB C16  C12 C 0 1 Y N N N N N -19.784 -12.159 -27.998 0.926  -1.636 -0.832 C16  YSB 12 
YSB C18  C13 C 0 1 Y N N N N N -19.747 -10.604 -29.631 0.058  0.354  -1.452 C18  YSB 13 
YSB C19  C14 C 0 1 N N N N N N -20.035 -9.288  -30.259 -0.046 1.689  -2.047 C19  YSB 14 
YSB C22  C15 C 0 1 Y N N N N N -19.238 -11.734 -30.180 -0.949 -0.301 -0.765 C22  YSB 15 
YSB C23  C16 C 0 1 Y N N N N N -18.669 -11.931 -31.586 -2.312 0.207  -0.497 C23  YSB 16 
YSB C24  C17 C 0 1 Y N N N N N -18.939 -13.000 -32.303 -3.195 0.435  -1.553 C24  YSB 17 
YSB C25  C18 C 0 1 Y N N N N N -18.314 -13.141 -33.692 -4.466 0.908  -1.297 C25  YSB 18 
YSB C26  C19 C 0 1 Y N N N N N -17.489 -12.220 -34.142 -4.867 1.156  0.003  C26  YSB 19 
YSB C27  C20 C 0 1 Y N N N N N -17.176 -11.005 -33.284 -3.996 0.931  1.057  C27  YSB 20 
YSB C29  C21 C 0 1 Y N N N N N -17.705 -10.873 -32.093 -2.723 0.453  0.814  C29  YSB 21 
YSB C30  C22 C 0 1 N N N N N N -16.857 -12.343 -35.544 -6.256 1.673  0.274  C30  YSB 22 
YSB C32  C23 C 0 1 N N N N N N -18.152 -9.729  -36.157 -8.964 1.114  0.819  C32  YSB 23 
YSB C35  C24 C 0 1 Y N N N N N -19.180 -12.816 -29.152 -0.398 -1.598 -0.356 C35  YSB 24 
YSB C36  C25 C 0 1 Y N N N N N -18.785 -14.134 -29.080 -0.916 -2.684 0.353  C36  YSB 25 
YSB C37  C26 C 0 1 Y N N N N N -18.971 -14.815 -27.853 -0.135 -3.781 0.581  C37  YSB 26 
YSB C38  C27 C 0 1 Y N N N N N -19.566 -14.167 -26.728 1.172  -3.825 0.113  C38  YSB 27 
YSB F28  F1  F 0 1 N N N N N N -16.343 -10.028 -33.743 -4.394 1.176  2.325  F28  YSB 28 
YSB N01  N1  N 0 1 N N N N N N -28.857 -12.755 -23.737 7.912  2.870  1.158  N01  YSB 29 
YSB N12  N2  N 0 1 N N N N N N -22.040 -12.209 -25.630 3.982  -2.004 -0.244 N12  YSB 30 
YSB N17  N3  N 0 1 Y N N N N N -20.033 -10.875 -28.391 1.177  -0.454 -1.487 N17  YSB 31 
YSB O08  O1  O 0 1 N N N N N N -24.204 -11.902 -26.133 5.021  -1.190 1.486  O08  YSB 32 
YSB O10  O2  O 0 1 N N N N N N -22.638 -10.492 -27.041 3.643  -2.981 1.796  O10  YSB 33 
YSB O20  O3  O 0 1 N N N N N N -20.008 -8.259  -29.504 1.010  2.223  -2.695 O20  YSB 34 
YSB O21  O4  O 0 1 N N N N N N -20.343 -9.334  -31.481 -1.084 2.315  -1.957 O21  YSB 35 
YSB O33  O5  O 0 1 N N N N N N -19.169 -12.152 -36.883 -7.484 -0.443 -0.710 O33  YSB 36 
YSB O34  O6  O 0 1 N N N N N N -17.230 -11.361 -38.068 -7.005 -0.419 1.694  O34  YSB 37 
YSB S31  S1  S 0 1 N N N N N N -17.891 -11.431 -36.749 -7.386 0.274  0.513  S31  YSB 38 
YSB H131 H1  H 0 0 N N N N N N -20.389 -10.956 -25.844 3.159  -2.462 -2.118 H131 YSB 39 
YSB H142 H2  H 0 0 N N N N N N -20.329 -11.827 -23.508 3.573  -4.650 -0.031 H142 YSB 40 
YSB H141 H3  H 0 0 N N N N N N -20.003 -13.471 -24.152 2.971  -4.896 -1.688 H141 YSB 41 
YSB H143 H4  H 0 0 N N N N N N -18.814 -12.151 -24.417 4.636  -4.328 -1.422 H143 YSB 42 
YSB H111 H5  H 0 0 N N N N N N -22.194 -13.983 -24.334 4.844  -0.554 -1.666 H111 YSB 43 
YSB H032 H6  H 0 0 N N N N N N -28.289 -14.872 -22.079 4.914  4.572  1.569  H032 YSB 44 
YSB H031 H7  H 0 0 N N N N N N -26.566 -15.090 -22.539 6.632  5.187  1.836  H031 YSB 45 
YSB H041 H8  H 0 0 N N N N N N -29.012 -15.335 -24.573 7.152  4.803  -0.617 H041 YSB 46 
YSB H042 H9  H 0 0 N N N N N N -27.290 -15.553 -25.033 5.434  4.188  -0.884 H042 YSB 47 
YSB H051 H10 H 0 0 N N N N N N -25.979 -12.302 -23.487 5.112  1.873  1.785  H051 YSB 48 
YSB H052 H11 H 0 0 N N N N N N -26.537 -12.290 -25.194 4.773  2.170  0.063  H052 YSB 49 
YSB H062 H12 H 0 0 N N N N N N -25.565 -14.610 -25.481 6.773  0.844  -0.560 H062 YSB 50 
YSB H061 H13 H 0 0 N N N N N N -24.916 -14.507 -23.809 7.113  0.547  1.162  H061 YSB 51 
YSB H241 H14 H 0 0 N N N N N N -19.593 -13.768 -31.916 -2.884 0.243  -2.569 H241 YSB 52 
YSB H251 H15 H 0 0 N N N N N N -18.550 -13.998 -34.305 -5.149 1.086  -2.115 H251 YSB 53 
YSB H291 H16 H 0 0 N N N N N N -17.458 -10.020 -31.478 -2.044 0.278  1.636  H291 YSB 54 
YSB H301 H17 H 0 0 N N N N N N -16.804 -13.403 -35.832 -6.246 2.289  1.174  H301 YSB 55 
YSB H302 H18 H 0 0 N N N N N N -15.844 -11.915 -35.530 -6.593 2.272  -0.572 H302 YSB 56 
YSB H321 H19 H 0 0 N N N N N N -18.644 -9.754  -35.174 -9.745 0.372  0.982  H321 YSB 57 
YSB H322 H20 H 0 0 N N N N N N -17.181 -9.219  -36.068 -8.874 1.747  1.702  H322 YSB 58 
YSB H323 H21 H 0 0 N N N N N N -18.788 -9.186  -36.872 -9.221 1.729  -0.043 H323 YSB 59 
YSB H361 H22 H 0 0 N N N N N N -18.347 -14.632 -29.933 -1.931 -2.657 0.719  H361 YSB 60 
YSB H371 H23 H 0 0 N N N N N N -18.657 -15.845 -27.766 -0.536 -4.620 1.130  H371 YSB 61 
YSB H381 H24 H 0 0 N N N N N N -19.709 -14.710 -25.805 1.776  -4.701 0.298  H381 YSB 62 
YSB H1   H25 H 0 1 N N N N N N -28.578 -11.843 -23.438 8.175  1.962  0.808  H1   YSB 63 
YSB H012 H26 H 0 0 N N N N N N -29.332 -12.687 -24.614 8.538  3.585  0.818  H012 YSB 64 
YSB H171 H28 H 0 0 N N N N N N -20.410 -10.190 -27.768 2.017  -0.220 -1.911 H171 YSB 65 
YSB H2   H29 H 0 1 N N N N N N -20.262 -7.492  -30.004 0.846  3.106  -3.053 H2   YSB 66 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YSB O34 S31  DOUB N N 1  
YSB O33 S31  DOUB N N 2  
YSB S31 C32  SING N N 3  
YSB S31 C30  SING N N 4  
YSB C30 C26  SING N N 5  
YSB C26 C25  DOUB Y N 6  
YSB C26 C27  SING Y N 7  
YSB F28 C27  SING N N 8  
YSB C25 C24  SING Y N 9  
YSB C27 C29  DOUB Y N 10 
YSB C24 C23  DOUB Y N 11 
YSB C29 C23  SING Y N 12 
YSB C23 C22  SING N N 13 
YSB O21 C19  DOUB N N 14 
YSB C19 C18  SING N N 15 
YSB C19 O20  SING N N 16 
YSB C22 C18  DOUB Y N 17 
YSB C22 C35  SING Y N 18 
YSB C18 N17  SING Y N 19 
YSB C35 C36  DOUB Y N 20 
YSB C35 C16  SING Y N 21 
YSB C36 C37  SING Y N 22 
YSB N17 C16  SING Y N 23 
YSB C16 C15  DOUB Y N 24 
YSB C37 C38  DOUB Y N 25 
YSB O10 C09  DOUB N N 26 
YSB C15 C38  SING Y N 27 
YSB C15 C13  SING N N 28 
YSB C09 O08  SING N N 29 
YSB C09 N12  SING N N 30 
YSB O08 C07  SING N N 31 
YSB C13 N12  SING N N 32 
YSB C13 C14  SING N N 33 
YSB N12 C11  SING N N 34 
YSB C07 C11  DOUB N N 35 
YSB C07 C06  SING N N 36 
YSB C06 C05  SING N N 37 
YSB C04 C02  SING N N 38 
YSB C04 C03  SING N N 39 
YSB C05 C02  SING N N 40 
YSB C02 N01  SING N N 41 
YSB C02 C03  SING N N 42 
YSB C13 H131 SING N N 43 
YSB C14 H142 SING N N 44 
YSB C14 H141 SING N N 45 
YSB C14 H143 SING N N 46 
YSB C11 H111 SING N N 47 
YSB C03 H032 SING N N 48 
YSB C03 H031 SING N N 49 
YSB C04 H041 SING N N 50 
YSB C04 H042 SING N N 51 
YSB C05 H051 SING N N 52 
YSB C05 H052 SING N N 53 
YSB C06 H062 SING N N 54 
YSB C06 H061 SING N N 55 
YSB C24 H241 SING N N 56 
YSB C25 H251 SING N N 57 
YSB C29 H291 SING N N 58 
YSB C30 H301 SING N N 59 
YSB C30 H302 SING N N 60 
YSB C32 H321 SING N N 61 
YSB C32 H322 SING N N 62 
YSB C32 H323 SING N N 63 
YSB C36 H361 SING N N 64 
YSB C37 H371 SING N N 65 
YSB C38 H381 SING N N 66 
YSB N01 H1   SING N N 67 
YSB N01 H012 SING N N 68 
YSB N17 H171 SING N N 69 
YSB O20 H2   SING N N 70 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YSB InChI            InChI                1.06  "InChI=1S/C27H28FN3O6S/c1-15(31-13-18(37-26(31)34)8-9-27(29)10-11-27)19-4-3-5-20-22(24(25(32)33)30-23(19)20)16-6-7-17(21(28)12-16)14-38(2,35)36/h3-7,12-13,15,30H,8-11,14,29H2,1-2H3,(H,32,33)/t15-/m0/s1" 
YSB InChIKey         InChI                1.06  NFKRMUKGVPOZHM-HNNXBMFYSA-N                                                                                                                                                                                
YSB SMILES_CANONICAL CACTVS               3.385 "C[C@H](N1C=C(CCC2(N)CC2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5"                                                                                                                         
YSB SMILES           CACTVS               3.385 "C[CH](N1C=C(CCC2(N)CC2)OC1=O)c3cccc4c3[nH]c(C(O)=O)c4c5ccc(C[S](C)(=O)=O)c(F)c5"                                                                                                                          
YSB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C=C(OC4=O)CCC5(CC5)N"                                                                                                                          
YSB SMILES           "OpenEye OEToolkits" 2.0.7 "CC(c1cccc2c1[nH]c(c2c3ccc(c(c3)F)CS(=O)(=O)C)C(=O)O)N4C=C(OC4=O)CCC5(CC5)N"                                                                                                                               
# 
_pdbx_chem_comp_identifier.comp_id           YSB 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "7-[(1~{S})-1-[5-[2-(1-azanylcyclopropyl)ethyl]-2-oxidanylidene-1,3-oxazol-3-yl]ethyl]-3-[3-fluoranyl-4-(methylsulfonylmethyl)phenyl]-1~{H}-indole-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YSB "Create component" 2023-06-20 PDBE 
YSB "Initial release"  2024-07-10 RCSB 
# 
