data_9TC
#

_chem_comp.id                                   9TC
_chem_comp.name                                 "(8-oxa-2-azaspiro[4.5]decan-2-yl)(2-{[(pyrazin-2-yl)methyl]amino}pyrimidin-5-yl)methanone"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C18 H22 N6 O2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-10-26
_chem_comp.pdbx_modified_date                   2022-01-07
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       354.406
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9TC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7SLV
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9TC  N3   N1   N  0  1  N  N  N  17.106  -30.642  -29.679   3.533   0.101   0.267  N3   9TC   1  
9TC  C4   C1   C  0  1  Y  N  N  20.297  -30.274  -31.497   6.769  -0.460   0.515  C4   9TC   2  
9TC  N2   N2   N  0  1  Y  N  N  21.163  -29.323  -31.918   7.945   0.089   0.765  N2   9TC   3  
9TC  C7   C2   C  0  1  Y  N  N  17.175  -29.715  -26.246   0.660  -1.686  -0.813  C7   9TC   4  
9TC  C6   C3   C  0  1  Y  N  N  17.612  -30.350  -28.429   2.224  -0.326   0.188  C6   9TC   5  
9TC  C9   C4   C  0  1  Y  N  N  19.375  -30.328  -26.937   0.060  -0.175   0.959  C9   9TC   6  
9TC  C13  C5   C  0  1  N  N  N  17.301  -27.072  -22.573  -4.888   0.112   0.207  C13  9TC   7  
9TC  C8   C6   C  0  1  Y  N  N  18.524  -29.871  -25.911  -0.322  -1.155   0.033  C8   9TC   8  
9TC  N5   N3   N  0  1  Y  N  N  18.968  -30.568  -28.193   1.323   0.203   1.007  N5   9TC   9  
9TC  C18  C7   C  0  1  N  N  N  15.855  -26.750  -22.202  -6.123   0.281   1.087  C18  9TC  10  
9TC  C16  C8   C  0  1  N  N  N  17.358  -24.788  -23.636  -6.069   1.375  -1.589  C16  9TC  11  
9TC  C1   C9   C  0  1  Y  N  N  20.676  -28.066  -32.010   8.272   1.237   0.197  C1   9TC  12  
9TC  C2   C10  C  0  1  Y  N  N  19.336  -27.764  -31.693   7.383   1.863  -0.659  C2   9TC  13  
9TC  N1   N4   N  0  1  Y  N  N  18.462  -28.714  -31.292   6.208   1.313  -0.909  N1   9TC  14  
9TC  C3   C11  C  0  1  Y  N  N  18.954  -29.972  -31.188   5.881   0.166  -0.341  C3   9TC  15  
9TC  C5   C12  C  0  1  N  N  N  18.003  -31.059  -30.753   4.543  -0.464  -0.631  C5   9TC  16  
9TC  N4   N5   N  0  1  Y  N  N  16.688  -29.917  -27.482   1.901  -1.252  -0.706  N4   9TC  17  
9TC  C10  C13  C  0  1  N  N  N  19.101  -29.678  -24.575  -1.722  -1.615  -0.048  C10  9TC  18  
9TC  O1   O1   O  0  1  N  N  N  20.151  -30.237  -24.248  -1.981  -2.686  -0.562  O1   9TC  19  
9TC  N6   N6   N  0  1  N  N  N  18.440  -28.907  -23.626  -2.713  -0.848   0.447  N6   9TC  20  
9TC  C11  C14  C  0  1  N  N  N  18.986  -28.803  -22.256  -2.613   0.527   0.990  C11  9TC  21  
9TC  C12  C15  C  0  1  N  N  N  17.948  -27.969  -21.503  -3.882   1.243   0.477  C12  9TC  22  
9TC  C14  C16  C  0  1  N  N  N  17.399  -27.901  -23.875  -4.151  -1.189   0.570  C14  9TC  23  
9TC  C15  C17  C  0  1  N  N  N  18.079  -25.761  -22.702  -5.285   0.099  -1.267  C15  9TC  24  
9TC  O2   O2   O  0  1  N  N  N  16.042  -24.561  -23.210  -7.202   1.465  -0.722  O2   9TC  25  
9TC  C17  C18  C  0  1  N  N  N  15.265  -25.728  -23.176  -6.872   1.549   0.666  C17  9TC  26  
9TC  H6   H1   H  0  1  N  N  N  16.636  -29.819  -29.999   3.784   0.777   0.915  H6   9TC  27  
9TC  H3   H2   H  0  1  N  N  N  20.643  -31.292  -31.395   6.504  -1.401   0.975  H3   9TC  28  
9TC  H7   H3   H  0  1  N  N  N  16.487  -29.416  -25.469   0.405  -2.444  -1.540  H7   9TC  29  
9TC  H8   H4   H  0  1  N  N  N  20.415  -30.495  -26.699  -0.668   0.260   1.628  H8   9TC  30  
9TC  H21  H5   H  0  1  N  N  N  15.826  -26.337  -21.183  -6.776  -0.583   0.969  H21  9TC  31  
9TC  H22  H6   H  0  1  N  N  N  15.258  -27.673  -22.240  -5.818   0.368   2.130  H22  9TC  32  
9TC  H17  H7   H  0  1  N  N  N  17.339  -25.212  -24.651  -5.428   2.243  -1.441  H17  9TC  33  
9TC  H18  H8   H  0  1  N  N  N  17.902  -23.832  -23.648  -6.406   1.343  -2.625  H18  9TC  34  
9TC  H1   H9   H  0  1  N  N  N  21.331  -27.271  -32.335   9.232   1.686   0.402  H1   9TC  35  
9TC  H2   H10  H  0  1  N  N  N  18.997  -26.742  -31.773   7.650   2.801  -1.123  H2   9TC  36  
9TC  H5   H11  H  0  1  N  N  N  17.395  -31.359  -31.619   4.607  -1.541  -0.475  H5   9TC  37  
9TC  H4   H12  H  0  1  N  N  N  18.592  -31.919  -30.402   4.263  -0.263  -1.665  H4   9TC  38  
9TC  H10  H13  H  0  1  N  N  N  19.091  -29.799  -21.801  -2.602   0.506   2.079  H10  9TC  39  
9TC  H9   H14  H  0  1  N  N  N  19.963  -28.298  -22.262  -1.718   1.022   0.610  H9   9TC  40  
9TC  H11  H15  H  0  1  N  N  N  18.433  -27.357  -20.728  -3.667   1.787  -0.442  H11  9TC  41  
9TC  H12  H16  H  0  1  N  N  N  17.194  -28.620  -21.037  -4.269   1.921   1.238  H12  9TC  42  
9TC  H14  H17  H  0  1  N  N  N  17.682  -27.256  -24.720  -4.385  -1.486   1.593  H14  9TC  43  
9TC  H13  H18  H  0  1  N  N  N  16.438  -28.389  -24.093  -4.415  -1.984  -0.127  H13  9TC  44  
9TC  H15  H19  H  0  1  N  N  N  19.079  -25.974  -23.107  -4.388   0.058  -1.885  H15  9TC  45  
9TC  H16  H20  H  0  1  N  N  N  18.176  -25.301  -21.708  -5.907  -0.772  -1.469  H16  9TC  46  
9TC  H20  H21  H  0  1  N  N  N  14.245  -25.472  -22.855  -7.787   1.643   1.252  H20  9TC  47  
9TC  H19  H22  H  0  1  N  N  N  15.232  -26.168  -24.184  -6.239   2.420   0.837  H19  9TC  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9TC  C1   N2   DOUB  Y  N   1  
9TC  C1   C2   SING  Y  N   2  
9TC  N2   C4   SING  Y  N   3  
9TC  C2   N1   DOUB  Y  N   4  
9TC  C4   C3   DOUB  Y  N   5  
9TC  N1   C3   SING  Y  N   6  
9TC  C3   C5   SING  N  N   7  
9TC  C5   N3   SING  N  N   8  
9TC  N3   C6   SING  N  N   9  
9TC  C6   N5   DOUB  Y  N  10  
9TC  C6   N4   SING  Y  N  11  
9TC  N5   C9   SING  Y  N  12  
9TC  N4   C7   DOUB  Y  N  13  
9TC  C9   C8   DOUB  Y  N  14  
9TC  C7   C8   SING  Y  N  15  
9TC  C8   C10  SING  N  N  16  
9TC  C10  O1   DOUB  N  N  17  
9TC  C10  N6   SING  N  N  18  
9TC  C14  N6   SING  N  N  19  
9TC  C14  C13  SING  N  N  20  
9TC  C16  O2   SING  N  N  21  
9TC  C16  C15  SING  N  N  22  
9TC  N6   C11  SING  N  N  23  
9TC  O2   C17  SING  N  N  24  
9TC  C17  C18  SING  N  N  25  
9TC  C15  C13  SING  N  N  26  
9TC  C13  C18  SING  N  N  27  
9TC  C13  C12  SING  N  N  28  
9TC  C11  C12  SING  N  N  29  
9TC  N3   H6   SING  N  N  30  
9TC  C4   H3   SING  N  N  31  
9TC  C7   H7   SING  N  N  32  
9TC  C9   H8   SING  N  N  33  
9TC  C18  H21  SING  N  N  34  
9TC  C18  H22  SING  N  N  35  
9TC  C16  H17  SING  N  N  36  
9TC  C16  H18  SING  N  N  37  
9TC  C1   H1   SING  N  N  38  
9TC  C2   H2   SING  N  N  39  
9TC  C5   H5   SING  N  N  40  
9TC  C5   H4   SING  N  N  41  
9TC  C11  H10  SING  N  N  42  
9TC  C11  H9   SING  N  N  43  
9TC  C12  H11  SING  N  N  44  
9TC  C12  H12  SING  N  N  45  
9TC  C14  H14  SING  N  N  46  
9TC  C14  H13  SING  N  N  47  
9TC  C15  H15  SING  N  N  48  
9TC  C15  H16  SING  N  N  49  
9TC  C17  H20  SING  N  N  50  
9TC  C17  H19  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9TC  SMILES            ACDLabs               12.01  "O=C(N1CCC2(C1)CCOCC2)c1cnc(NCc2cnccn2)nc1"  
9TC  InChI             InChI                 1.03   "InChI=1S/C18H22N6O2/c25-16(24-6-1-18(13-24)2-7-26-8-3-18)14-9-21-17(22-10-14)23-12-15-11-19-4-5-20-15/h4-5,9-11H,1-3,6-8,12-13H2,(H,21,22,23)"  
9TC  InChIKey          InChI                 1.03   VGRLXWFIXGZRMS-UHFFFAOYSA-N  
9TC  SMILES_CANONICAL  CACTVS                3.385  "O=C(N1CCC2(CCOCC2)C1)c3cnc(NCc4cnccn4)nc3"  
9TC  SMILES            CACTVS                3.385  "O=C(N1CCC2(CCOCC2)C1)c3cnc(NCc4cnccn4)nc3"  
9TC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cnc(cn1)CNc2ncc(cn2)C(=O)N3CCC4(C3)CCOCC4"  
9TC  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cnc(cn1)CNc2ncc(cn2)C(=O)N3CCC4(C3)CCOCC4"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9TC  "SYSTEMATIC NAME"  ACDLabs               12.01  "(8-oxa-2-azaspiro[4.5]decan-2-yl)(2-{[(pyrazin-2-yl)methyl]amino}pyrimidin-5-yl)methanone"  
9TC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "8-oxa-2-azaspiro[4.5]decan-2-yl-[2-(pyrazin-2-ylmethylamino)pyrimidin-5-yl]methanone"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9TC  "Create component"  2021-10-26  RCSB  
9TC  "Initial release"   2022-01-12  RCSB  
##
