data_9XC
#

_chem_comp.id                                   9XC
_chem_comp.name                                 "3,5-bis(azanyl)-N-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C12 H15 N9 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-08-22
_chem_comp.pdbx_modified_date                   2019-09-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       333.306
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    9XC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6AG3
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9XC  N1   N1   N  0  1  Y  N  N  -28.525  -17.417   2.974  -3.835   0.359   0.988  N1   9XC   1  
9XC  C2   C1   C  0  1  Y  N  N  -28.471  -16.532   0.748  -1.671   0.398   0.090  C2   9XC   2  
9XC  C3   C2   C  0  1  Y  N  N  -28.316  -17.598   1.647  -2.649   0.941   0.924  C3   9XC   3  
9XC  C4   C3   C  0  1  Y  N  N  -28.897  -16.203   3.479  -4.102  -0.725   0.276  C4   9XC   4  
9XC  C5   C4   C  0  1  Y  N  N  -28.848  -15.293   1.284  -1.993  -0.753  -0.650  C5   9XC   5  
9XC  C6   C5   C  0  1  N  N  N  -28.076  -16.227   5.805  -6.264  -0.660   1.254  C6   9XC   6  
9XC  N8   N2   N  0  1  N  N  N  -32.324  -20.660  -2.565   4.088  -3.475   0.532  N8   9XC   7  
9XC  C9   C6   C  0  1  Y  N  N  -27.789  -16.978  -3.459   2.080   2.211  -0.211  C9   9XC   8  
9XC  C10  C7   C  0  1  Y  N  N  -27.091  -16.147  -1.375  -0.209   2.403  -0.252  C10  9XC   9  
9XC  C11  C8   C  0  1  N  N  N  -29.926  -18.332  -3.601   3.170   0.002   0.175  C11  9XC  10  
9XC  C12  C9   C  0  1  N  N  N  -31.675  -19.942  -3.374   4.181  -2.103   0.529  C12  9XC  11  
9XC  O3   O1   O  0  1  N  N  N  -29.985  -18.178  -4.796   4.267   0.526   0.200  O3   9XC  12  
9XC  N6   N3   N  0  1  N  N  N  -30.706  -19.165  -2.899   3.060  -1.336   0.282  N6   9XC  13  
9XC  N7   N4   N  0  1  N  N  N  -31.966  -19.950  -4.673   5.326  -1.528   0.758  N7   9XC  14  
9XC  C8   C10  C  0  1  Y  N  N  -28.903  -17.548  -2.840   1.962   0.831   0.027  C8   9XC  15  
9XC  N3   N5   N  0  1  Y  N  N  -29.103  -17.384  -1.497   0.755   0.273   0.119  N3   9XC  16  
9XC  N9   N6   N  0  1  N  N  N  -27.518  -17.089  -4.780   3.332   2.789  -0.312  N9   9XC  17  
9XC  N4   N7   N  0  1  Y  N  N  -26.908  -16.300  -2.708   0.990   2.958  -0.343  N4   9XC  18  
9XC  N5   N8   N  0  1  N  N  N  -26.135  -15.432  -0.733  -1.343   3.181  -0.390  N5   9XC  19  
9XC  C1   C11  C  0  1  Y  N  N  -28.221  -16.693  -0.734  -0.330   1.018  -0.013  C1   9XC  20  
9XC  O2   O2   O  0  1  N  N  N  -28.985  -14.211   0.459  -1.080  -1.319  -1.474  O2   9XC  21  
9XC  C7   C12  C  0  1  N  N  N  -28.423  -12.951   0.846  -1.488  -2.487  -2.190  C7   9XC  22  
9XC  N2   N9   N  0  1  Y  N  N  -29.055  -15.148   2.628  -3.207  -1.274  -0.528  N2   9XC  23  
9XC  O1   O3   O  0  1  N  N  N  -29.115  -16.044   4.835  -5.330  -1.288   0.373  O1   9XC  24  
9XC  H1   H1   H  0  1  N  N  N  -28.028  -18.571   1.278  -2.441   1.825   1.508  H1   9XC  25  
9XC  H2   H2   H  0  1  N  N  N  -28.479  -16.049   6.813  -5.862  -0.656   2.267  H2   9XC  26  
9XC  H3   H3   H  0  1  N  N  N  -27.691  -17.256   5.740  -6.437   0.366   0.928  H3   9XC  27  
9XC  H4   H4   H  0  1  N  N  N  -27.260  -15.517   5.606  -7.205  -1.210   1.238  H4   9XC  28  
9XC  H5   H5   H  0  1  N  N  N  -32.105  -20.637  -1.589   3.252  -3.905   0.291  H5   9XC  29  
9XC  H6   H6   H  0  1  N  N  N  -33.057  -21.252  -2.899   4.857  -4.013   0.776  H6   9XC  30  
9XC  H7   H7   H  0  1  N  N  N  -30.542  -19.207  -1.913   2.193  -1.761   0.187  H7   9XC  31  
9XC  H8   H8   H  0  1  N  N  N  -32.723  -20.569  -4.884   6.114  -2.067   0.931  H8   9XC  32  
9XC  H9   H9   H  0  1  N  N  N  -26.659  -16.621  -4.985   4.126   2.232  -0.303  H9   9XC  33  
9XC  H10  H10  H  0  1  N  N  N  -27.437  -18.056  -5.023   3.416   3.752  -0.392  H10  9XC  34  
9XC  H11  H11  H  0  1  N  N  N  -25.441  -15.137  -1.390  -2.219   2.765  -0.400  H11  9XC  35  
9XC  H12  H12  H  0  1  N  N  N  -26.551  -14.630  -0.304  -1.262   4.144  -0.479  H12  9XC  36  
9XC  H13  H13  H  0  1  N  N  N  -28.629  -12.202   0.067  -0.664  -2.838  -2.812  H13  9XC  37  
9XC  H14  H14  H  0  1  N  N  N  -28.873  -12.625   1.796  -1.768  -3.267  -1.483  H14  9XC  38  
9XC  H15  H15  H  0  1  N  N  N  -27.336  -13.058   0.973  -2.343  -2.245  -2.822  H15  9XC  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9XC  O3   C11  DOUB  N  N   1  
9XC  N9   C9   SING  N  N   2  
9XC  N7   C12  DOUB  N  N   3  
9XC  C11  N6   SING  N  N   4  
9XC  C11  C8   SING  N  N   5  
9XC  C9   C8   DOUB  Y  N   6  
9XC  C9   N4   SING  Y  N   7  
9XC  C12  N6   SING  N  N   8  
9XC  C12  N8   SING  N  N   9  
9XC  C8   N3   SING  Y  N  10  
9XC  N4   C10  DOUB  Y  N  11  
9XC  N3   C1   DOUB  Y  N  12  
9XC  C10  C1   SING  Y  N  13  
9XC  C10  N5   SING  N  N  14  
9XC  C1   C2   SING  N  N  15  
9XC  O2   C7   SING  N  N  16  
9XC  O2   C5   SING  N  N  17  
9XC  C2   C5   DOUB  Y  N  18  
9XC  C2   C3   SING  Y  N  19  
9XC  C5   N2   SING  Y  N  20  
9XC  C3   N1   DOUB  Y  N  21  
9XC  N2   C4   DOUB  Y  N  22  
9XC  N1   C4   SING  Y  N  23  
9XC  C4   O1   SING  N  N  24  
9XC  O1   C6   SING  N  N  25  
9XC  C3   H1   SING  N  N  26  
9XC  C6   H2   SING  N  N  27  
9XC  C6   H3   SING  N  N  28  
9XC  C6   H4   SING  N  N  29  
9XC  N8   H5   SING  N  N  30  
9XC  N8   H6   SING  N  N  31  
9XC  N6   H7   SING  N  N  32  
9XC  N7   H8   SING  N  N  33  
9XC  N9   H9   SING  N  N  34  
9XC  N9   H10  SING  N  N  35  
9XC  N5   H11  SING  N  N  36  
9XC  N5   H12  SING  N  N  37  
9XC  C7   H13  SING  N  N  38  
9XC  C7   H14  SING  N  N  39  
9XC  C7   H15  SING  N  N  40  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9XC  InChI             InChI                 1.03   "InChI=1S/C12H15N9O3/c1-23-10-4(3-17-12(21-10)24-2)5-7(13)19-8(14)6(18-5)9(22)20-11(15)16/h3H,1-2H3,(H4,13,14,19)(H4,15,16,20,22)"  
9XC  InChIKey          InChI                 1.03   CDFUEJXDMOJTBY-UHFFFAOYSA-N  
9XC  SMILES_CANONICAL  CACTVS                3.385  "COc1ncc(c(OC)n1)c2nc(c(N)nc2N)C(=O)NC(N)=N"  
9XC  SMILES            CACTVS                3.385  "COc1ncc(c(OC)n1)c2nc(c(N)nc2N)C(=O)NC(N)=N"  
9XC  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "[H]/N=C(/N)\NC(=O)c1c(nc(c(n1)c2cnc(nc2OC)OC)N)N"  
9XC  SMILES            "OpenEye OEToolkits"  2.0.6  "COc1c(cnc(n1)OC)c2c(nc(c(n2)C(=O)NC(=N)N)N)N"  
#
_pdbx_chem_comp_identifier.comp_id          9XC
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "3,5-bis(azanyl)-~{N}-carbamimidoyl-6-(2,4-dimethoxypyrimidin-5-yl)pyrazine-2-carboxamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9XC  "Create component"  2018-08-22  PDBJ  
9XC  "Initial release"   2019-09-18  RCSB  
##
