data_KKC
# 
_chem_comp.id                                    KKC 
_chem_comp.name                                  "delta-{1-([2,2'-bipyridin]-5-ylmethyl)pyrrolidine-2,5-dione}bis[2-(2,4-difluorophenyl)pyridine)]iridium(III)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C37 H25 F4 Ir N5 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    3 
_chem_comp.pdbx_initial_date                     2022-09-23 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        839.837 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KKC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   Y 
_chem_comp.pdbx_model_coordinates_db_code        7YLK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KKC C10 C1  C  0 1 Y N N N N N 4.209  5.229  -0.605 ? ? ? C10 KKC 1  
KKC C13 C2  C  0 1 Y N N N N N 1.662  4.140  2.006  ? ? ? C13 KKC 2  
KKC C15 C3  C  0 1 Y N N N N N 1.295  2.373  3.655  ? ? ? C15 KKC 3  
KKC C17 C4  C  0 1 Y N N N N N 0.101  2.976  3.992  ? ? ? C17 KKC 4  
KKC C20 C5  C  0 1 Y N N N N N -1.170 6.175  -1.279 ? ? ? C20 KKC 5  
KKC C21 C6  C  0 1 Y N N N N N -1.653 5.610  -2.457 ? ? ? C21 KKC 6  
KKC C22 C7  C  0 1 Y N N N N N -1.644 4.240  -2.619 ? ? ? C22 KKC 7  
KKC C24 C8  C  0 1 Y N N N N N -0.696 4.071  -0.463 ? ? ? C24 KKC 8  
KKC C11 C9  C  0 1 Y N N N N N 3.566  6.357  -1.062 ? ? ? C11 KKC 9  
KKC C12 C10 C  0 1 Y N N N N N 2.346  6.691  -0.493 ? ? ? C12 KKC 10 
KKC C14 C11 C  0 1 Y N N N N N 2.044  2.975  2.668  ? ? ? C14 KKC 11 
KKC C16 C12 C  0 1 Y N N N N N -2.904 7.550  4.302  ? ? ? C16 KKC 12 
KKC C18 C13 C  0 1 Y N N N N N -0.347 4.127  3.388  ? ? ? C18 KKC 13 
KKC C19 C14 C  0 1 Y N N N N N 0.424  4.733  2.378  ? ? ? C19 KKC 14 
KKC C23 C15 C  0 1 Y N N N N N -1.149 3.444  -1.621 ? ? ? C23 KKC 15 
KKC C25 C16 C  0 1 Y N N N N N -1.134 7.566  -1.017 ? ? ? C25 KKC 16 
KKC C02 C17 C  0 1 N N N N N N 1.464  1.917  -1.927 ? ? ? C02 KKC 17 
KKC C03 C18 C  0 1 N N N N N N 2.405  1.188  -2.896 ? ? ? C03 KKC 18 
KKC C04 C19 C  0 1 N N N N N N 1.635  1.045  -4.214 ? ? ? C04 KKC 19 
KKC C05 C20 C  0 1 Y N N N N N -1.741 7.338  3.556  ? ? ? C05 KKC 20 
KKC C06 C21 C  0 1 Y N N N N N 1.921  7.823  3.242  ? ? ? C06 KKC 21 
KKC C07 C22 C  0 1 Y N N N N N 0.620  7.438  2.960  ? ? ? C07 KKC 22 
KKC C08 C23 C  0 1 Y N N N N N 2.408  4.829  0.944  ? ? ? C08 KKC 23 
KKC C09 C24 C  0 1 Y N N N N N 3.643  4.464  0.390  ? ? ? C09 KKC 24 
KKC C26 C25 C  0 1 Y N N N N N -1.591 8.522  -1.938 ? ? ? C26 KKC 25 
KKC C27 C26 C  0 1 Y N N N N N -4.117 7.078  3.857  ? ? ? C27 KKC 26 
KKC C28 C27 C  0 1 Y N N N N N -1.517 9.848  -1.603 ? ? ? C28 KKC 27 
KKC C29 C28 C  0 1 Y N N N N N -1.000 10.219 -0.374 ? ? ? C29 KKC 28 
KKC C30 C29 C  0 1 Y N N N N N -0.583 9.244  0.464  ? ? ? C30 KKC 29 
KKC C31 C30 C  0 1 Y N N N N N -4.164 6.390  2.648  ? ? ? C31 KKC 30 
KKC C32 C31 C  0 1 Y N N N N N -2.996 6.204  1.953  ? ? ? C32 KKC 31 
KKC C33 C32 C  0 1 Y N N N N N -0.389 7.779  3.904  ? ? ? C33 KKC 32 
KKC C34 C33 C  0 1 Y N N N N N -0.046 8.486  5.055  ? ? ? C34 KKC 33 
KKC C35 C34 C  0 1 Y N N N N N 1.250  8.874  5.332  ? ? ? C35 KKC 34 
KKC C36 C35 C  0 1 Y N N N N N 2.182  8.517  4.400  ? ? ? C36 KKC 35 
KKC C37 C36 C  0 1 N N N N N N 0.151  0.968  -3.828 ? ? ? C37 KKC 36 
KKC C41 C37 C  0 1 N N N N N N -1.143 1.909  -1.783 ? ? ? C41 KKC 37 
KKC F01 F1  F  0 1 N N N N N N 3.209  2.362  2.371  ? ? ? F01 KKC 38 
KKC F02 F2  F  0 1 N N N N N N -0.643 2.383  4.964  ? ? ? F02 KKC 39 
KKC F03 F3  F  0 1 N N N N N N -0.987 8.833  5.964  ? ? ? F03 KKC 40 
KKC F04 F4  F  0 1 N N N N N N 3.456  8.866  4.627  ? ? ? F04 KKC 41 
KKC N01 N1  N  0 1 N N N N N N 0.142  1.363  -2.377 ? ? ? N01 KKC 42 
KKC N37 N2  N  0 1 Y N N N N N -1.791 6.660  2.363  ? ? ? N37 KKC 43 
KKC N38 N3  N  0 1 Y N N N N N 1.789  5.947  0.483  ? ? ? N38 KKC 44 
KKC N39 N4  N  0 1 Y N N N N N -0.710 5.415  -0.293 ? ? ? N39 KKC 45 
KKC N40 N5  N  0 1 Y N N N N N -0.634 7.926  0.139  ? ? ? N40 KKC 46 
KKC O01 O1  O  0 1 N N N N N N -0.908 0.356  -4.567 ? ? ? O01 KKC 47 
KKC O02 O2  O  0 1 N N N N N N 1.791  2.323  -0.604 ? ? ? O02 KKC 48 
KKC IR2 IR1 IR 3 0 N N N N N N -0.014 6.402  1.362  ? ? ? IR2 KKC 49 
KKC H1  H1  H  0 1 N N N N N N 5.161  4.943  -1.028 ? ? ? H1  KKC 50 
KKC H2  H2  H  0 1 N N N N N N 1.628  1.469  4.143  ? ? ? H2  KKC 51 
KKC H3  H3  H  0 1 N N N N N N -2.034 6.244  -3.243 ? ? ? H3  KKC 52 
KKC H4  H4  H  0 1 N N N N N N -2.025 3.798  -3.528 ? ? ? H4  KKC 53 
KKC H5  H5  H  0 1 N N N N N N -0.315 3.456  0.339  ? ? ? H5  KKC 54 
KKC H6  H6  H  0 1 N N N N N N 4.000  6.965  -1.842 ? ? ? H6  KKC 55 
KKC H7  H7  H  0 1 N N N N N N 1.828  7.572  -0.842 ? ? ? H7  KKC 56 
KKC H8  H8  H  0 1 N N N N N N -2.850 8.089  5.236  ? ? ? H8  KKC 57 
KKC H9  H9  H  0 1 N N N N N N -1.288 4.565  3.688  ? ? ? H9  KKC 58 
KKC H10 H10 H  0 1 N N N N N N 2.668  0.197  -2.499 ? ? ? H10 KKC 59 
KKC H11 H11 H  0 1 N N N N N N 3.322  1.776  -3.052 ? ? ? H11 KKC 60 
KKC H12 H12 H  0 1 N N N N N N 1.942  0.128  -4.739 ? ? ? H12 KKC 61 
KKC H13 H13 H  0 1 N N N N N N 1.818  1.916  -4.860 ? ? ? H13 KKC 62 
KKC H14 H14 H  0 1 N N N N N N 2.722  7.580  2.559  ? ? ? H14 KKC 63 
KKC H15 H15 H  0 1 N N N N N N 4.152  3.580  0.745  ? ? ? H15 KKC 64 
KKC H16 H16 H  0 1 N N N N N N -1.993 8.218  -2.893 ? ? ? H16 KKC 65 
KKC H17 H17 H  0 1 N N N N N N -5.015 7.238  4.435  ? ? ? H17 KKC 66 
KKC H18 H18 H  0 1 N N N N N N -1.861 10.602 -2.296 ? ? ? H18 KKC 67 
KKC H19 H19 H  0 1 N N N N N N -0.932 11.259 -0.092 ? ? ? H19 KKC 68 
KKC H20 H20 H  0 1 N N N N N N -0.193 9.524  1.431  ? ? ? H20 KKC 69 
KKC H21 H21 H  0 1 N N N N N N -5.100 6.011  2.265  ? ? ? H21 KKC 70 
KKC H22 H22 H  0 1 N N N N N N -3.042 5.660  1.021  ? ? ? H22 KKC 71 
KKC H23 H23 H  0 1 N N N N N N 1.509  9.423  6.225  ? ? ? H23 KKC 72 
KKC H24 H24 H  0 1 N N N N N N -1.978 1.626  -2.441 ? ? ? H24 KKC 73 
KKC H25 H25 H  0 1 N N N N N N -1.288 1.455  -0.792 ? ? ? H25 KKC 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KKC O01 C37 DOUB N N 1  
KKC C04 C37 SING N N 2  
KKC C04 C03 SING N N 3  
KKC C37 N01 SING N N 4  
KKC C03 C02 SING N N 5  
KKC C22 C21 DOUB Y N 6  
KKC C22 C23 SING Y N 7  
KKC C21 C20 SING Y N 8  
KKC N01 C02 SING N N 9  
KKC N01 C41 SING N N 10 
KKC C26 C28 DOUB Y N 11 
KKC C26 C25 SING Y N 12 
KKC C02 O02 DOUB N N 13 
KKC C41 C23 SING N N 14 
KKC C23 C24 DOUB Y N 15 
KKC C28 C29 SING Y N 16 
KKC C20 C25 SING N N 17 
KKC C20 N39 DOUB Y N 18 
KKC C11 C10 DOUB Y N 19 
KKC C11 C12 SING Y N 20 
KKC C25 N40 DOUB Y N 21 
KKC C10 C09 SING Y N 22 
KKC C12 N38 DOUB Y N 23 
KKC C24 N39 SING Y N 24 
KKC C29 C30 DOUB Y N 25 
KKC N39 IR2 SING N N 26 
KKC N40 C30 SING Y N 27 
KKC N40 IR2 SING N N 28 
KKC C09 C08 DOUB Y N 29 
KKC N38 C08 SING Y N 30 
KKC N38 IR2 SING N N 31 
KKC C08 C13 SING N N 32 
KKC IR2 N37 SING N N 33 
KKC IR2 C19 SING N N 34 
KKC IR2 C07 SING N N 35 
KKC C32 N37 DOUB Y N 36 
KKC C32 C31 SING Y N 37 
KKC C13 C19 DOUB Y N 38 
KKC C13 C14 SING Y N 39 
KKC N37 C05 SING Y N 40 
KKC F01 C14 SING N N 41 
KKC C19 C18 SING Y N 42 
KKC C31 C27 DOUB Y N 43 
KKC C14 C15 DOUB Y N 44 
KKC C07 C06 DOUB Y N 45 
KKC C07 C33 SING Y N 46 
KKC C06 C36 SING Y N 47 
KKC C18 C17 DOUB Y N 48 
KKC C05 C33 SING N N 49 
KKC C05 C16 DOUB Y N 50 
KKC C15 C17 SING Y N 51 
KKC C27 C16 SING Y N 52 
KKC C33 C34 DOUB Y N 53 
KKC C17 F02 SING N N 54 
KKC C36 F04 SING N N 55 
KKC C36 C35 DOUB Y N 56 
KKC C34 C35 SING Y N 57 
KKC C34 F03 SING N N 58 
KKC C10 H1  SING N N 59 
KKC C15 H2  SING N N 60 
KKC C21 H3  SING N N 61 
KKC C22 H4  SING N N 62 
KKC C24 H5  SING N N 63 
KKC C11 H6  SING N N 64 
KKC C12 H7  SING N N 65 
KKC C16 H8  SING N N 66 
KKC C18 H9  SING N N 67 
KKC C03 H10 SING N N 68 
KKC C03 H11 SING N N 69 
KKC C04 H12 SING N N 70 
KKC C04 H13 SING N N 71 
KKC C06 H14 SING N N 72 
KKC C09 H15 SING N N 73 
KKC C26 H16 SING N N 74 
KKC C27 H17 SING N N 75 
KKC C28 H18 SING N N 76 
KKC C29 H19 SING N N 77 
KKC C30 H20 SING N N 78 
KKC C31 H21 SING N N 79 
KKC C32 H22 SING N N 80 
KKC C35 H23 SING N N 81 
KKC C41 H24 SING N N 82 
KKC C41 H25 SING N N 83 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KKC InChI            InChI                1.06  "InChI=1S/C15H13N3O2.2C11H6F2N.Ir/c19-14-6-7-15(20)18(14)10-11-4-5-13(17-9-11)12-3-1-2-8-16-12;2*12-8-4-5-9(10(13)7-8)11-3-1-2-6-14-11;/h1-5,8-9H,6-7,10H2;2*1-4,6-7H;/q;;;+3" 
KKC InChIKey         InChI                1.06  QUFXSILAYVLQGU-UHFFFAOYSA-N                                                                                                                                                    
KKC SMILES_CANONICAL CACTVS               3.385 "Fc1cc(F)c(c([Ir+3]c2cc(F)cc(F)c2c3ccccn3)c1)c4ccccn4.O=C5CCC(=O)N5Cc6ccc(nc6)c7ccccn7"                                                                                        
KKC SMILES           CACTVS               3.385 "Fc1cc(F)c(c([Ir+3]c2cc(F)cc(F)c2c3ccccn3)c1)c4ccccn4.O=C5CCC(=O)N5Cc6ccc(nc6)c7ccccn7"                                                                                        
KKC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1F)C3=CC=CC=[N]3[Ir+3]245(c6cc(cc(c6C7=CC=CC=[N]47)F)F)[N]8=C(C=CC=C8)C9=[N]5C=C(C=C9)CN1C(=O)CCC1=O)F"                                                             
KKC SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(cc2c(c1F)C3=CC=CC=[N]3[Ir+3]245(c6cc(cc(c6C7=CC=CC=[N]47)F)F)[N]8=C(C=CC=C8)C9=[N]5C=C(C=C9)CN1C(=O)CCC1=O)F"                                                             
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KKC "Create component" 2022-09-23 PDBJ 
KKC "Initial release"  2023-03-15 RCSB 
KKC "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            KKC 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C04 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
