data_LIC
#

_chem_comp.id                                   LIC
_chem_comp.name                                 "3-(2-CHLOROBENZYL)-1-(2-{[(1S)-2-HYDROXY-1,2-DIMETHYLPROPYL]AMINO}PYRIMIDIN-4-YL)-1-(4-METHOXYPHENYL)UREA"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H28 Cl N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-03-29
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       469.964
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    LIC
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2GHM
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LIC  N1    N1    N   0  1  N  N  N   3.551  -0.832  20.475  -0.099   0.614   0.119  N1    LIC   1  
LIC  C7    C7    C   0  1  N  N  N   1.949  -3.270  22.643  -2.070  -2.458  -0.323  C7    LIC   2  
LIC  C13   C13   C   0  1  Y  N  N   2.909  -5.554  22.231  -4.046  -2.858  -1.806  C13   LIC   3  
LIC  C15   C15   C   0  1  Y  N  N   4.648  -5.302  24.383  -5.792  -2.539   0.316  C15   LIC   4  
LIC  C21   C21   C   0  1  Y  N  N   5.300  -0.652  16.739  -3.064   3.543  -0.032  C21   LIC   5  
LIC  C22   C22   C   0  1  Y  N  N   5.463  -0.512  19.118  -1.981   1.746   1.127  C22   LIC   6  
LIC  C24   C24   C   0  1  Y  N  N   3.944  -0.967  16.826  -2.183   3.393  -1.093  C24   LIC   7  
LIC  CL16  CL16  CL  0  0  N  N  N   3.812  -2.780  25.072  -3.811  -2.087   2.106  CL16  LIC   8  
LIC  C12   C12   C   0  1  Y  N  N   3.771  -4.266  24.068  -4.427  -2.430   0.520  C12   LIC   9  
LIC  C11   C11   C   0  1  Y  N  N   4.638  -6.478  23.639  -6.281  -2.813  -0.947  C11   LIC  10  
LIC  C14   C14   C   0  1  Y  N  N   3.778  -6.590  22.555  -5.409  -2.972  -2.008  C14   LIC  11  
LIC  C9    C9    C   0  1  Y  N  N   2.896  -4.393  22.997  -3.555  -2.583  -0.543  C9    LIC  12  
LIC  N5    N5    N   0  1  N  N  N   2.748  -2.133  22.211  -1.718  -1.045  -0.160  N5    LIC  13  
LIC  C1    C1    C   0  1  N  N  N   3.191  -2.005  20.972  -0.435  -0.690   0.049  C1    LIC  14  
LIC  O4    O4    O   0  1  N  N  N   3.302  -2.966  20.237   0.420  -1.545   0.176  O4    LIC  15  
LIC  C2    C2    C   0  1  Y  N  N   4.112  -0.816  19.199  -1.096   1.598   0.068  C2    LIC  16  
LIC  C25   C25   C   0  1  Y  N  N   6.059  -0.401  17.874  -2.963   2.716   1.077  C25   LIC  17  
LIC  O30   O30   O   0  1  N  N  N   5.956  -0.541  15.544  -4.030   4.499  -0.081  O30   LIC  18  
LIC  C31   C31   C   0  1  N  N  N   5.350   0.291  14.556  -3.878   5.177  -1.329  C31   LIC  19  
LIC  C23   C23   C   0  1  Y  N  N   3.329  -1.049  18.074  -1.198   2.427  -1.041  C23   LIC  20  
LIC  C3    C3    C   0  1  Y  N  N   3.344   0.420  21.076   1.237   0.982   0.241  C3    LIC  21  
LIC  C35   C35   C   0  1  Y  N  N   3.393   1.544  20.266   1.584   2.304   0.522  C35   LIC  22  
LIC  C37   C37   C   0  1  Y  N  N   3.171   2.794  20.830   2.923   2.625   0.634  C37   LIC  23  
LIC  N39   N39   N   0  1  Y  N  N   2.892   2.879  22.130   3.832   1.675   0.474  N39   LIC  24  
LIC  C41   C41   C   0  1  Y  N  N   2.809   1.795  22.913   3.474   0.428   0.208  C41   LIC  25  
LIC  N42   N42   N   0  1  Y  N  N   3.043   0.579  22.384   2.201   0.079   0.098  N42   LIC  26  
LIC  N36   N36   N   0  1  N  N  N   2.478   1.998  24.204   4.454  -0.536   0.048  N36   LIC  27  
LIC  C43   C43   C   0  1  N  N  S   2.415   0.871  25.124   5.868  -0.171   0.172  C43   LIC  28  
LIC  C45   C45   C   0  1  N  N  N   3.084   1.285  26.432   6.276  -0.211   1.646  C45   LIC  29  
LIC  C47   C47   C   0  1  N  N  N   0.981   0.387  25.318   6.722  -1.163  -0.620  C47   LIC  30  
LIC  C53   C53   C   0  1  N  N  N   0.932  -0.773  26.299   6.313  -1.123  -2.094  C53   LIC  31  
LIC  O52   O52   O   0  1  N  N  N   0.217   1.459  25.860   6.523  -2.481  -0.106  O52   LIC  32  
LIC  C51   C51   C   0  1  N  N  N   0.259  -0.008  24.037   8.198  -0.782  -0.490  C51   LIC  33  
LIC  H71   1H7   H   0  1  N  N  N   1.346  -2.995  23.521  -1.539  -2.868  -1.182  H71   LIC  34  
LIC  H72   2H7   H   0  1  N  N  N   1.265  -3.584  21.841  -1.787  -3.008   0.575  H72   LIC  35  
LIC  H13   H13   H   0  1  N  N  N   2.245  -5.651  21.385  -3.365  -2.982  -2.635  H13   LIC  36  
LIC  H15   H15   H   0  1  N  N  N   5.338  -5.192  25.207  -6.473  -2.414   1.144  H15   LIC  37  
LIC  H22   H22   H   0  1  N  N  N   6.044  -0.363  20.016  -1.902   1.102   1.991  H22   LIC  38  
LIC  H24   H24   H   0  1  N  N  N   3.372  -1.147  15.928  -2.263   4.037  -1.956  H24   LIC  39  
LIC  H11   H11   H   0  1  N  N  N   5.293  -7.295  23.902  -7.346  -2.902  -1.106  H11   LIC  40  
LIC  H14   H14   H   0  1  N  N  N   3.784  -7.490  21.958  -5.792  -3.186  -2.995  H14   LIC  41  
LIC  HN5   HN5   H   0  1  N  N  N   2.971  -1.421  22.877  -2.408  -0.365  -0.204  HN5   LIC  42  
LIC  H25   H25   H   0  1  N  N  N   7.099  -0.123  17.787  -3.652   2.830   1.901  H25   LIC  43  
LIC  H311  1H31  H   0  0  N  N  N   5.194   1.298  14.970  -3.996   4.464  -2.146  H311  LIC  44  
LIC  H312  2H31  H   0  0  N  N  N   6.007   0.354  13.676  -4.635   5.956  -1.414  H312  LIC  45  
LIC  H313  3H31  H   0  0  N  N  N   4.381  -0.138  14.260  -2.887   5.626  -1.380  H313  LIC  46  
LIC  H23   H23   H   0  1  N  N  N   2.279  -1.286  18.164  -0.510   2.313  -1.865  H23   LIC  47  
LIC  H35   H35   H   0  1  N  N  N   3.601   1.449  19.210   0.822   3.060   0.648  H35   LIC  48  
LIC  H37   H37   H   0  1  N  N  N   3.224   3.685  20.223   3.225   3.639   0.850  H37   LIC  49  
LIC  HN36  HN36  H   0  0  N  N  N   3.169   2.620  24.573   4.205  -1.453  -0.147  HN36  LIC  50  
LIC  H43   H43   H   0  1  N  N  N   2.957   0.010  24.707   6.019   0.834  -0.220  H43   LIC  51  
LIC  H451  1H45  H   0  0  N  N  N   4.168   1.385  26.274   6.125  -1.216   2.039  H451  LIC  52  
LIC  H452  2H45  H   0  0  N  N  N   2.672   2.249  26.765   7.328   0.061   1.739  H452  LIC  53  
LIC  H453  3H45  H   0  0  N  N  N   2.894   0.520  27.199   5.668   0.496   2.211  H453  LIC  54  
LIC  H531  1H53  H   0  0  N  N  N   0.920  -1.723  25.744   6.465  -0.118  -2.487  H531  LIC  55  
LIC  H532  2H53  H   0  0  N  N  N   1.818  -0.740  26.950   6.921  -1.830  -2.659  H532  LIC  56  
LIC  H533  3H53  H   0  0  N  N  N   0.022  -0.696  26.913   5.261  -1.395  -2.187  H533  LIC  57  
LIC  HO52  HO52  H   0  0  N  N  N   0.047   1.294  26.780   7.078  -3.073  -0.632  HO52  LIC  58  
LIC  H511  1H51  H   0  0  N  N  N  -0.818  -0.103  24.237   8.489  -0.810   0.560  H511  LIC  59  
LIC  H512  2H51  H   0  0  N  N  N   0.423   0.764  23.271   8.806  -1.488  -1.055  H512  LIC  60  
LIC  H513  3H51  H   0  0  N  N  N   0.651  -0.971  23.677   8.350   0.224  -0.883  H513  LIC  61  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LIC  N1    C1    SING  N  N   1  
LIC  N1    C2    SING  N  N   2  
LIC  N1    C3    SING  N  N   3  
LIC  C7    C9    SING  N  N   4  
LIC  C7    N5    SING  N  N   5  
LIC  C7    H71   SING  N  N   6  
LIC  C7    H72   SING  N  N   7  
LIC  C13   C14   DOUB  Y  N   8  
LIC  C13   C9    SING  Y  N   9  
LIC  C13   H13   SING  N  N  10  
LIC  C15   C12   SING  Y  N  11  
LIC  C15   C11   DOUB  Y  N  12  
LIC  C15   H15   SING  N  N  13  
LIC  C21   C24   DOUB  Y  N  14  
LIC  C21   C25   SING  Y  N  15  
LIC  C21   O30   SING  N  N  16  
LIC  C22   C2    SING  Y  N  17  
LIC  C22   C25   DOUB  Y  N  18  
LIC  C22   H22   SING  N  N  19  
LIC  C24   C23   SING  Y  N  20  
LIC  C24   H24   SING  N  N  21  
LIC  CL16  C12   SING  N  N  22  
LIC  C12   C9    DOUB  Y  N  23  
LIC  C11   C14   SING  Y  N  24  
LIC  C11   H11   SING  N  N  25  
LIC  C14   H14   SING  N  N  26  
LIC  N5    C1    SING  N  N  27  
LIC  N5    HN5   SING  N  N  28  
LIC  C1    O4    DOUB  N  N  29  
LIC  C2    C23   DOUB  Y  N  30  
LIC  C25   H25   SING  N  N  31  
LIC  O30   C31   SING  N  N  32  
LIC  C31   H311  SING  N  N  33  
LIC  C31   H312  SING  N  N  34  
LIC  C31   H313  SING  N  N  35  
LIC  C23   H23   SING  N  N  36  
LIC  C3    C35   SING  Y  N  37  
LIC  C3    N42   DOUB  Y  N  38  
LIC  C35   C37   DOUB  Y  N  39  
LIC  C35   H35   SING  N  N  40  
LIC  C37   N39   SING  Y  N  41  
LIC  C37   H37   SING  N  N  42  
LIC  N39   C41   DOUB  Y  N  43  
LIC  C41   N42   SING  Y  N  44  
LIC  C41   N36   SING  N  N  45  
LIC  N36   C43   SING  N  N  46  
LIC  N36   HN36  SING  N  N  47  
LIC  C43   C45   SING  N  N  48  
LIC  C43   C47   SING  N  N  49  
LIC  C43   H43   SING  N  N  50  
LIC  C45   H451  SING  N  N  51  
LIC  C45   H452  SING  N  N  52  
LIC  C45   H453  SING  N  N  53  
LIC  C47   C53   SING  N  N  54  
LIC  C47   O52   SING  N  N  55  
LIC  C47   C51   SING  N  N  56  
LIC  C53   H531  SING  N  N  57  
LIC  C53   H532  SING  N  N  58  
LIC  C53   H533  SING  N  N  59  
LIC  O52   HO52  SING  N  N  60  
LIC  C51   H511  SING  N  N  61  
LIC  C51   H512  SING  N  N  62  
LIC  C51   H513  SING  N  N  63  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LIC  SMILES            ACDLabs               10.04  "Clc1ccccc1CNC(=O)N(c2nc(ncc2)NC(C(O)(C)C)C)c3ccc(OC)cc3"  
LIC  SMILES_CANONICAL  CACTVS                3.341  "COc1ccc(cc1)N(C(=O)NCc2ccccc2Cl)c3ccnc(N[C@@H](C)C(C)(C)O)n3"  
LIC  SMILES            CACTVS                3.341  "COc1ccc(cc1)N(C(=O)NCc2ccccc2Cl)c3ccnc(N[CH](C)C(C)(C)O)n3"  
LIC  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H](C(C)(C)O)Nc1nccc(n1)N(c2ccc(cc2)OC)C(=O)NCc3ccccc3Cl"  
LIC  SMILES            "OpenEye OEToolkits"  1.5.0  "CC(C(C)(C)O)Nc1nccc(n1)N(c2ccc(cc2)OC)C(=O)NCc3ccccc3Cl"  
LIC  InChI             InChI                 1.03   "InChI=1S/C24H28ClN5O3/c1-16(24(2,3)32)28-22-26-14-13-21(29-22)30(18-9-11-19(33-4)12-10-18)23(31)27-15-17-7-5-6-8-20(17)25/h5-14,16,32H,15H2,1-4H3,(H,27,31)(H,26,28,29)/t16-/m0/s1"  
LIC  InChIKey          InChI                 1.03   ZHBOBAJCKHPQBT-INIZCTEOSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LIC  "SYSTEMATIC NAME"  ACDLabs               10.04  "3-(2-chlorobenzyl)-1-(2-{[(1S)-2-hydroxy-1,2-dimethylpropyl]amino}pyrimidin-4-yl)-1-(4-methoxyphenyl)urea"  
LIC  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "3-[(2-chlorophenyl)methyl]-1-[2-[[(2S)-3-hydroxy-3-methyl-butan-2-yl]amino]pyrimidin-4-yl]-1-(4-methoxyphenyl)urea"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LIC  "Create component"   2006-03-29  RCSB  
LIC  "Modify descriptor"  2011-06-04  RCSB  
LIC  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     LIC
_pdbx_chem_comp_synonyms.name        "3-PYRIDIN-4-YL-2,4-DIHYDRO-INDENO[1,2-.C.]PYRAZOLE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
