data_O7C
# 
_chem_comp.id                                    O7C 
_chem_comp.name                                  "1,4-dimethyl-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)benzimidazol-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H22 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-01-26 
_chem_comp.pdbx_modified_date                    2023-12-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        390.432 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     O7C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8I15 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
O7C C10 C1  C 0 1 Y N N N N N 1.200  -2.583 85.071 1.199  -0.136 0.158  C10 O7C 1  
O7C C13 C2  C 0 1 Y N N N N N 0.486  -1.090 87.122 0.482  -2.164 -0.918 C13 O7C 2  
O7C C15 C3  C 0 1 Y N N N N N -1.367 -2.401 85.734 -1.093 -0.833 0.341  C15 O7C 3  
O7C C17 C4  C 0 1 N N N N N N -0.583 -3.911 83.649 -0.401 1.290  1.477  C17 O7C 4  
O7C C22 C5  C 0 1 N N N N N N -2.206 -0.207 88.711 -2.170 -3.905 -1.337 C22 O7C 5  
O7C C24 C6  C 0 1 Y N N N N N -3.617 -4.775 85.407 -3.907 1.041  0.561  C24 O7C 6  
O7C C26 C7  C 0 1 Y N N N N N -3.218 -6.482 87.384 -5.880 1.697  -0.626 C26 O7C 7  
O7C C28 C8  C 0 1 Y N N N N N -3.828 -7.358 84.976 -3.912 3.055  -0.734 C28 O7C 8  
O7C C1  C9  C 0 1 N N N N N N 5.583  -5.506 84.266 5.716  1.050  -1.269 C1  O7C 9  
O7C C2  C10 C 0 1 N N N N N N 5.737  -5.569 85.782 6.476  0.242  -0.218 C2  O7C 10 
O7C C3  C11 C 0 1 N N N N N N 4.422  -5.703 86.548 5.682  -1.029 0.113  C3  O7C 11 
O7C C4  C12 C 0 1 N N N N N N 3.307  -4.760 86.113 4.365  -0.598 0.722  C4  O7C 12 
O7C C5  C13 C 0 1 N N N N N N 3.415  -4.063 84.749 3.663  0.530  0.100  C5  O7C 13 
O7C C6  C14 C 0 1 N N N N N N 4.569  -4.451 83.832 4.303  1.309  -0.834 C6  O7C 14 
O7C C9  C15 C 0 1 N N N N N N 2.341  -3.100 84.198 2.272  0.827  0.476  C9  O7C 15 
O7C C12 C16 C 0 1 Y N N N N N 1.566  -1.650 86.214 1.480  -1.264 -0.620 C12 O7C 16 
O7C C14 C17 C 0 1 Y N N N N N -0.986 -1.487 86.854 -0.808 -1.953 -0.447 C14 O7C 17 
O7C C16 C18 C 0 1 Y N N N N N -0.253 -2.973 84.811 -0.095 0.076  0.638  C16 O7C 18 
O7C C19 C19 C 0 1 N N N N N N -3.341 -1.744 86.910 -2.963 -2.003 0.084  C19 O7C 19 
O7C C23 C20 C 0 1 N N N N N N -3.681 -3.336 84.914 -3.190 0.073  1.466  C23 O7C 20 
O7C C25 C21 C 0 1 Y N N N N N -3.282 -5.049 86.867 -5.222 0.809  0.204  C25 O7C 21 
O7C C27 C22 C 0 1 Y N N N N N -3.487 -7.643 86.437 -5.223 2.817  -1.100 C27 O7C 22 
O7C C29 C23 C 0 1 Y N N N N N -3.899 -5.927 84.453 -3.252 2.164  0.092  C29 O7C 23 
O7C N18 N1  N 0 1 N N N N N N -2.191 -1.092 87.564 -1.997 -2.658 -0.586 N18 O7C 24 
O7C N20 N2  N 0 1 N N N N N N -2.829 -2.544 85.779 -2.450 -0.897 0.655  N20 O7C 25 
O7C O7  O1  O 0 1 N N N N N N 4.756  -3.758 82.627 3.641  2.341  -1.377 O7  O7C 26 
O7C O8  O2  O 0 1 N N N N N N 2.365  -4.623 86.834 3.905  -1.166 1.691  O8  O7C 27 
O7C O11 O3  O 0 1 N N N N N N 2.397  -2.706 83.074 2.006  1.867  1.048  O11 O7C 28 
O7C O21 O4  O 0 1 N N N N N N -4.480 -1.653 87.222 -4.124 -2.357 0.161  O21 O7C 29 
O7C H1  H1  H 0 1 N N N N N N 0.739  -0.429 87.938 0.702  -3.034 -1.519 H1  O7C 30 
O7C H2  H2  H 0 1 N N N N N N -0.557 -4.953 84.000 -0.774 2.089  0.836  H2  O7C 31 
O7C H3  H3  H 0 1 N N N N N N -1.587 -3.678 83.264 -1.158 1.036  2.219  H3  O7C 32 
O7C H4  H4  H 0 1 N N N N N N 0.158  -3.776 82.847 0.506  1.621  1.982  H4  O7C 33 
O7C H5  H5  H 0 1 N N N N N N -3.241 -0.072 89.057 -1.991 -4.754 -0.677 H5  O7C 34 
O7C H6  H6  H 0 1 N N N N N N -1.603 -0.645 89.520 -3.186 -3.955 -1.727 H6  O7C 35 
O7C H7  H7  H 0 1 N N N N N N -1.784 0.768  88.427 -1.460 -3.932 -2.164 H7  O7C 36 
O7C H8  H8  H 0 1 N N N N N N -2.982 -6.673 88.420 -6.908 1.515  -0.905 H8  O7C 37 
O7C H9  H9  H 0 1 N N N N N N -4.022 -8.181 84.304 -3.398 3.930  -1.104 H9  O7C 38 
O7C H10 H10 H 0 1 N N N N N N 5.249  -6.489 83.903 6.223  2.003  -1.423 H10 O7C 39 
O7C H11 H11 H 0 1 N N N N N N 6.559  -5.263 83.821 5.705  0.496  -2.207 H11 O7C 40 
O7C H12 H12 H 0 1 N N N N N N 6.367  -6.436 86.027 7.456  -0.032 -0.608 H12 O7C 41 
O7C H13 H13 H 0 1 N N N N N N 6.236  -4.647 86.115 6.597  0.841  0.684  H13 O7C 42 
O7C H14 H14 H 0 1 N N N N N N 4.061  -6.734 86.422 5.500  -1.599 -0.798 H14 O7C 43 
O7C H15 H15 H 0 1 N N N N N N 4.629  -5.514 87.612 6.239  -1.638 0.825  H15 O7C 44 
O7C H16 H16 H 0 1 N N N N N N 2.599  -1.384 86.381 2.482  -1.429 -0.988 H16 O7C 45 
O7C H17 H17 H 0 1 N N N N N N -3.321 -3.278 83.876 -2.495 0.619  2.104  H17 O7C 46 
O7C H18 H18 H 0 1 N N N N N N -4.716 -2.967 84.965 -3.917 -0.452 2.086  H18 O7C 47 
O7C H19 H19 H 0 1 N N N N N N -3.089 -4.225 87.539 -5.736 -0.067 0.574  H19 O7C 48 
O7C H20 H20 H 0 1 N N N N N N -3.437 -8.660 86.796 -5.734 3.506  -1.756 H20 O7C 49 
O7C H21 H21 H 0 1 N N N N N N -4.146 -5.734 83.420 -2.224 2.346  0.371  H21 O7C 50 
O7C H22 H22 H 0 1 N N N N N N 3.999  -3.211 82.455 2.760  2.530  -1.026 H22 O7C 51 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
O7C O7  C6  SING N N 1  
O7C O11 C9  DOUB N N 2  
O7C C17 C16 SING N N 3  
O7C C6  C1  SING N N 4  
O7C C6  C5  DOUB N N 5  
O7C C9  C5  SING N N 6  
O7C C9  C10 SING N N 7  
O7C C1  C2  SING N N 8  
O7C C29 C28 DOUB Y N 9  
O7C C29 C24 SING Y N 10 
O7C C5  C4  SING N N 11 
O7C C16 C10 DOUB Y N 12 
O7C C16 C15 SING Y N 13 
O7C C23 C24 SING N N 14 
O7C C23 N20 SING N N 15 
O7C C28 C27 SING Y N 16 
O7C C10 C12 SING Y N 17 
O7C C24 C25 DOUB Y N 18 
O7C C15 N20 SING N N 19 
O7C C15 C14 DOUB Y N 20 
O7C N20 C19 SING N N 21 
O7C C2  C3  SING N N 22 
O7C C4  C3  SING N N 23 
O7C C4  O8  DOUB N N 24 
O7C C12 C13 DOUB Y N 25 
O7C C27 C26 DOUB Y N 26 
O7C C14 C13 SING Y N 27 
O7C C14 N18 SING N N 28 
O7C C25 C26 SING Y N 29 
O7C C19 O21 DOUB N N 30 
O7C C19 N18 SING N N 31 
O7C N18 C22 SING N N 32 
O7C C13 H1  SING N N 33 
O7C C17 H2  SING N N 34 
O7C C17 H3  SING N N 35 
O7C C17 H4  SING N N 36 
O7C C22 H5  SING N N 37 
O7C C22 H6  SING N N 38 
O7C C22 H7  SING N N 39 
O7C C26 H8  SING N N 40 
O7C C28 H9  SING N N 41 
O7C C1  H10 SING N N 42 
O7C C1  H11 SING N N 43 
O7C C2  H12 SING N N 44 
O7C C2  H13 SING N N 45 
O7C C3  H14 SING N N 46 
O7C C3  H15 SING N N 47 
O7C C12 H16 SING N N 48 
O7C C23 H17 SING N N 49 
O7C C23 H18 SING N N 50 
O7C C25 H19 SING N N 51 
O7C C27 H20 SING N N 52 
O7C C29 H21 SING N N 53 
O7C O7  H22 SING N N 54 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
O7C InChI            InChI                1.06  "InChI=1S/C23H22N2O4/c1-14-16(22(28)20-18(26)9-6-10-19(20)27)11-12-17-21(14)25(23(29)24(17)2)13-15-7-4-3-5-8-15/h3-5,7-8,11-12,26H,6,9-10,13H2,1-2H3" 
O7C InChIKey         InChI                1.06  BLDJZCZVJMSDIC-UHFFFAOYSA-N                                                                                                                           
O7C SMILES_CANONICAL CACTVS               3.385 "CN1C(=O)N(Cc2ccccc2)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O"                                                                                               
O7C SMILES           CACTVS               3.385 "CN1C(=O)N(Cc2ccccc2)c3c(C)c(ccc13)C(=O)C4=C(O)CCCC4=O"                                                                                               
O7C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3)C(=O)C4=C(CCCC4=O)O"                                                                                                 
O7C SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1N(C(=O)N2C)Cc3ccccc3)C(=O)C4=C(CCCC4=O)O"                                                                                                 
# 
_pdbx_chem_comp_identifier.comp_id           O7C 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "1,4-dimethyl-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)benzimidazol-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
O7C "Create component" 2023-01-26 PDBJ 
O7C "Initial release"  2023-12-20 RCSB 
# 
