data_Q8C
# 
_chem_comp.id                                    Q8C 
_chem_comp.name                                  N-benzyladenosine 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C17 H19 N5 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-01 
_chem_comp.pdbx_modified_date                    2023-01-06 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.364 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Q8C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8CXT 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Q8C N1  N1  N 0 1 Y N N -31.105 0.445  12.240 0.290  -1.138 -0.151 N1  Q8C 1  
Q8C C7  C1  C 0 1 Y N N -31.688 1.638  14.093 -0.577 0.808  0.475  C7  Q8C 2  
Q8C C8  C2  C 0 1 Y N N -30.755 3.498  14.827 0.632  2.694  0.988  C8  Q8C 3  
Q8C N2  N2  N 0 1 Y N N -31.708 2.586  15.034 -0.525 2.080  0.856  N2  Q8C 4  
Q8C C9  C3  C 0 1 Y N N -29.841 2.582  12.921 1.831  0.822  0.369  C9  Q8C 5  
Q8C O1  O1  O 0 1 N N N -35.696 0.761  13.911 -3.696 2.200  -0.765 O1  Q8C 6  
Q8C C1  C4  C 0 1 N N R -34.854 -0.338 14.241 -3.589 0.781  -0.901 C1  Q8C 7  
Q8C C5  C5  C 0 1 Y N N -32.119 -0.113 12.855 -1.005 -1.269 -0.131 C5  Q8C 8  
Q8C C6  C6  C 0 1 Y N N -30.818 1.556  13.017 0.622  0.123  0.214  C6  Q8C 9  
Q8C N3  N3  N 0 1 Y N N -29.843 3.553  13.851 1.784  2.093  0.755  N3  Q8C 10 
Q8C C4  C7  C 0 1 N N R -33.576 0.154  14.912 -3.022 0.155  0.392  C4  Q8C 11 
Q8C C3  C8  C 0 1 N N N -33.971 -3.150 16.147 -5.845 -2.076 -0.200 C3  Q8C 12 
Q8C O3  O2  O 0 1 N N N -33.114 -0.938 15.677 -3.736 -1.091 0.542  O3  Q8C 13 
Q8C C2  C9  C 0 1 N N R -34.259 -1.665 16.174 -5.102 -0.793 0.179  C2  Q8C 14 
Q8C N4  N4  N 0 1 N N N -28.878 2.619  11.977 3.044  0.200  0.126  N4  Q8C 15 
Q8C N   N5  N 0 1 Y N N -32.519 0.549  13.986 -1.585 -0.096 0.250  N   Q8C 16 
Q8C C   C10 C 0 1 N N S -35.468 -1.217 15.342 -4.989 0.144  -1.044 C   Q8C 17 
Q8C O   O3  O 0 1 N N N -36.406 -0.505 16.142 -6.004 1.149  -1.001 O   Q8C 18 
Q8C C10 C11 C 0 1 N N N -28.704 1.608  10.948 4.295  0.944  0.293  C10 Q8C 19 
Q8C C11 C12 C 0 1 Y N N -29.326 1.988  9.627  5.460  0.046  -0.031 C11 Q8C 20 
Q8C C12 C13 C 0 1 Y N N -29.184 1.171  8.514  5.943  -0.021 -1.325 C12 Q8C 21 
Q8C C13 C14 C 0 1 Y N N -29.759 1.521  7.303  7.012  -0.845 -1.622 C13 Q8C 22 
Q8C C14 C15 C 0 1 Y N N -30.482 2.690  7.189  7.599  -1.603 -0.626 C14 Q8C 23 
Q8C C15 C16 C 0 1 Y N N -30.629 3.510  8.287  7.117  -1.536 0.668  C15 Q8C 24 
Q8C C16 C17 C 0 1 Y N N -30.055 3.163  9.499  6.051  -0.707 0.967  C16 Q8C 25 
Q8C O2  O4  O 0 1 N N N -34.116 -3.687 14.839 -5.976 -2.908 0.955  O2  Q8C 26 
Q8C H1  H1  H 0 1 N N N -30.715 4.302  15.547 0.639  3.728  1.299  H1  Q8C 27 
Q8C H2  H2  H 0 1 N N N -36.487 0.440  13.494 -4.047 2.645  -1.548 H2  Q8C 28 
Q8C H3  H3  H 0 1 N N N -34.612 -0.949 13.359 -2.962 0.527  -1.756 H3  Q8C 29 
Q8C H4  H4  H 0 1 N N N -32.597 -1.015 12.502 -1.540 -2.174 -0.379 H4  Q8C 30 
Q8C H5  H5  H 0 1 N N N -33.826 1.001  15.568 -3.211 0.807  1.245  H5  Q8C 31 
Q8C H6  H6  H 0 1 N N N -34.672 -3.662 16.823 -6.835 -1.823 -0.580 H6  Q8C 32 
Q8C H7  H7  H 0 1 N N N -32.940 -3.320 16.491 -5.285 -2.607 -0.969 H7  Q8C 33 
Q8C H8  H8  H 0 1 N N N -34.442 -1.372 17.218 -5.611 -0.288 0.999  H8  Q8C 34 
Q8C H9  H9  H 0 1 N N N -28.012 2.649  12.476 3.065  -0.728 -0.155 H9  Q8C 35 
Q8C H10 H10 H 0 1 N N N -35.937 -2.099 14.881 -5.056 -0.425 -1.972 H10 Q8C 36 
Q8C H11 H11 H 0 1 N N N -36.759 -1.084 16.807 -6.903 0.804  -1.087 H11 Q8C 37 
Q8C H12 H12 H 0 1 N N N -29.167 0.673  11.296 4.299  1.803  -0.379 H12 Q8C 38 
Q8C H13 H13 H 0 1 N N N -27.627 1.449  10.794 4.377  1.289  1.324  H13 Q8C 39 
Q8C H14 H14 H 0 1 N N N -28.620 0.253  8.593  5.484  0.571  -2.103 H14 Q8C 40 
Q8C H15 H15 H 0 1 N N N -29.641 0.876  6.445  7.389  -0.898 -2.633 H15 Q8C 41 
Q8C H16 H16 H 0 1 N N N -30.930 2.961  6.245  8.434  -2.247 -0.858 H16 Q8C 42 
Q8C H17 H17 H 0 1 N N N -31.194 4.427  8.202  7.575  -2.128 1.447  H17 Q8C 43 
Q8C H18 H18 H 0 1 N N N -30.176 3.813  10.353 5.674  -0.654 1.978  H18 Q8C 44 
Q8C H19 H19 H 0 1 N N N -33.929 -4.618 14.856 -6.439 -3.741 0.788  H19 Q8C 45 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Q8C C14 C13 DOUB Y N 1  
Q8C C14 C15 SING Y N 2  
Q8C C13 C12 SING Y N 3  
Q8C C15 C16 DOUB Y N 4  
Q8C C12 C11 DOUB Y N 5  
Q8C C16 C11 SING Y N 6  
Q8C C11 C10 SING N N 7  
Q8C C10 N4  SING N N 8  
Q8C N4  C9  SING N N 9  
Q8C N1  C5  DOUB Y N 10 
Q8C N1  C6  SING Y N 11 
Q8C C5  N   SING Y N 12 
Q8C C9  C6  DOUB Y N 13 
Q8C C9  N3  SING Y N 14 
Q8C C6  C7  SING Y N 15 
Q8C N3  C8  DOUB Y N 16 
Q8C O1  C1  SING N N 17 
Q8C N   C7  SING Y N 18 
Q8C N   C4  SING N N 19 
Q8C C7  N2  DOUB Y N 20 
Q8C C1  C4  SING N N 21 
Q8C C1  C   SING N N 22 
Q8C C8  N2  SING Y N 23 
Q8C O2  C3  SING N N 24 
Q8C C4  O3  SING N N 25 
Q8C C   O   SING N N 26 
Q8C C   C2  SING N N 27 
Q8C O3  C2  SING N N 28 
Q8C C3  C2  SING N N 29 
Q8C C8  H1  SING N N 30 
Q8C O1  H2  SING N N 31 
Q8C C1  H3  SING N N 32 
Q8C C5  H4  SING N N 33 
Q8C C4  H5  SING N N 34 
Q8C C3  H6  SING N N 35 
Q8C C3  H7  SING N N 36 
Q8C C2  H8  SING N N 37 
Q8C N4  H9  SING N N 38 
Q8C C   H10 SING N N 39 
Q8C O   H11 SING N N 40 
Q8C C10 H12 SING N N 41 
Q8C C10 H13 SING N N 42 
Q8C C12 H14 SING N N 43 
Q8C C13 H15 SING N N 44 
Q8C C14 H16 SING N N 45 
Q8C C15 H17 SING N N 46 
Q8C C16 H18 SING N N 47 
Q8C O2  H19 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Q8C SMILES           ACDLabs              12.01 "OCC1OC(n2cnc3c(NCc4ccccc4)ncnc32)C(O)C1O"                                                                                                                                    
Q8C InChI            InChI                1.03  "InChI=1S/C17H19N5O4/c23-7-11-13(24)14(25)17(26-11)22-9-21-12-15(19-8-20-16(12)22)18-6-10-4-2-1-3-5-10/h1-5,8-9,11,13-14,17,23-25H,6-7H2,(H,18,19,20)/t11-,13-,14-,17-/m1/s1" 
Q8C InChIKey         InChI                1.03  MRPKNNSABYPGBF-LSCFUAHRSA-N                                                                                                                                                   
Q8C SMILES_CANONICAL CACTVS               3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(NCc4ccccc4)ncnc23"                                                                                                                   
Q8C SMILES           CACTVS               3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(NCc4ccccc4)ncnc23"                                                                                                                        
Q8C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2c3c(ncn2)n(cn3)[C@H]4[C@@H]([C@@H]([C@H](O4)CO)O)O"                                                                                                            
Q8C SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CNc2c3c(ncn2)n(cn3)C4C(C(C(O4)CO)O)O"                                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Q8C "SYSTEMATIC NAME" ACDLabs              12.01 N-benzyladenosine                                                                                   
Q8C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{S},4~{R},5~{R})-2-(hydroxymethyl)-5-[6-[(phenylmethyl)amino]purin-9-yl]oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Q8C "Create component" 2022-06-01 RCSB 
Q8C "Initial release"  2023-01-11 RCSB 
# 
