data_SRC
# 
_chem_comp.id                                    SRC 
_chem_comp.name                                  "[[(2~{R},3~{S},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H20 N5 O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-19 
_chem_comp.pdbx_modified_date                    2023-12-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        539.223 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     SRC 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8C0G 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
SRC C5   C1  C 0 1 N N R N N N 25.955 83.871 -11.815 3.183  1.156  1.435  C5   SRC 1  
SRC C7   C2  C 0 1 N N R N N N 24.094 84.940 -10.815 1.337  2.118  0.466  C7   SRC 2  
SRC C8   C3  C 0 1 N N N N N N 23.071 84.533 -9.784  0.333  1.990  -0.681 C8   SRC 3  
SRC C22  C4  C 0 1 N N S N N N 23.731 84.653 -12.276 2.502  3.048  0.060  C22  SRC 4  
SRC C24  C5  C 0 1 N N S N N N 25.108 84.491 -12.954 3.744  2.401  0.712  C24  SRC 5  
SRC C26  C6  C 0 1 N N N N N N 26.811 81.739 -12.858 4.552  -0.572 0.171  C26  SRC 6  
SRC C28  C7  C 0 1 N N N N N N 28.206 81.398 -14.585 4.746  -1.031 -2.091 C28  SRC 7  
SRC C1   C8  C 0 1 N N N N N N 25.279 79.003 -11.010 6.494  -2.621 2.571  C1   SRC 8  
SRC N2   N1  N 0 1 N N N N N N 25.741 80.240 -11.624 5.630  -1.675 1.860  N2   SRC 9  
SRC C3   C9  C 0 1 N N N N N N 25.337 81.490 -11.078 4.790  -0.632 2.463  C3   SRC 10 
SRC N4   N2  N 0 1 N N N N N N 26.065 82.418 -11.924 4.127  0.039  1.339  N4   SRC 11 
SRC O6   O1  O 0 1 N N N N N N 25.332 84.223 -10.587 1.960  0.842  0.734  O6   SRC 12 
SRC O9   O2  O 0 1 N N N N N N 22.873 83.103 -9.836  -0.756 1.161  -0.270 O9   SRC 13 
SRC P10  P1  P 0 1 N N N N N N 22.502 82.232 -8.545  -2.001 0.809  -1.229 P10  SRC 14 
SRC O11  O3  O 0 1 N N N N N N 22.587 83.083 -7.339  -1.485 -0.065 -2.479 O11  SRC 15 
SRC O12  O4  O 0 1 N N N N N N 23.266 80.961 -8.567  -2.613 2.063  -1.722 O12  SRC 16 
SRC O13  O5  O 0 1 N N N N N N 20.964 81.910 -8.847  -3.095 -0.033 -0.401 O13  SRC 17 
SRC P14  P2  P 0 1 N N N N N N 19.729 82.833 -9.273  -4.639 -0.415 -0.654 P14  SRC 18 
SRC O15  O6  O 0 1 N N N N N N 20.034 83.467 -10.574 -5.346 0.748  -1.235 O15  SRC 19 
SRC O16  O7  O 0 1 N N N N N N 18.473 82.058 -9.126  -4.723 -1.658 -1.674 O16  SRC 20 
SRC O17  O8  O 0 1 N N N N N N 19.788 83.936 -8.114  -5.328 -0.819 0.744  O17  SRC 21 
SRC P18  P3  P 0 1 N N N N N N 19.834 84.039 -6.475  -6.853 -0.997 1.229  P18  SRC 22 
SRC O19  O9  O 0 1 N N N N N N 18.468 84.565 -6.092  -7.527 0.453  1.419  O19  SRC 23 
SRC O20  O10 O 0 1 N N N N N N 20.959 84.996 -6.131  -7.608 -1.762 0.212  O20  SRC 24 
SRC O21  O11 O 0 1 N N N N N N 20.094 82.632 -5.978  -6.882 -1.790 2.629  O21  SRC 25 
SRC O23  O12 O 0 1 N N N N N N 22.836 85.603 -12.876 2.293  4.365  0.573  O23  SRC 26 
SRC O25  O13 O 0 1 N N N N N N 25.872 85.246 -13.886 4.342  3.298  1.650  O25  SRC 27 
SRC N27  N3  N 0 1 N N N N N N 27.615 82.297 -13.791 4.231  -0.325 -1.110 N27  SRC 28 
SRC N29  N4  N 0 1 N N N N N N 29.059 81.810 -15.529 4.385  -0.746 -3.384 N29  SRC 29 
SRC N30  N5  N 0 1 N N N N N N 28.024 80.042 -14.470 5.627  -2.042 -1.855 N30  SRC 30 
SRC C31  C10 C 0 1 N N N N N N 27.204 79.413 -13.550 5.993  -2.336 -0.590 C31  SRC 31 
SRC O32  O14 O 0 1 N N N N N N 27.024 78.198 -13.605 6.783  -3.241 -0.365 O32  SRC 32 
SRC C33  C11 C 0 1 N N N N N N 26.603 80.370 -12.676 5.444  -1.590 0.464  C33  SRC 33 
SRC H5   H1  H 0 1 N N N N N N 26.961 84.313 -11.860 2.974  1.386  2.480  H5   SRC 34 
SRC H7   H2  H 0 1 N N N N N N 24.278 86.020 -10.714 0.843  2.495  1.362  H7   SRC 35 
SRC H8A  H3  H 0 1 N N N N N N 23.427 84.817 -8.783  -0.043 2.978  -0.947 H8A  SRC 36 
SRC H8B  H4  H 0 1 N N N N N N 22.119 85.042 -9.992  0.824  1.543  -1.545 H8B  SRC 37 
SRC H22  H5  H 0 1 N N N N N N 23.247 83.665 -12.298 2.609  3.074  -1.024 H22  SRC 38 
SRC H1A  H8  H 0 1 N N N N N N 24.591 79.237 -10.185 5.928  -3.521 2.812  H1A  SRC 39 
SRC H1C  H9  H 0 1 N N N N N N 24.756 78.394 -11.762 7.343  -2.883 1.939  H1C  SRC 40 
SRC H1B  H10 H 0 1 N N N N N N 26.142 78.443 -10.620 6.855  -2.162 3.492  H1B  SRC 41 
SRC H3B  H11 H 0 1 N N N N N N 25.637 81.585 -10.024 4.049  -1.080 3.125  H3B  SRC 42 
SRC H3A  H12 H 0 1 N N N N N N 24.250 81.635 -11.164 5.407  0.077  3.015  H3A  SRC 43 
SRC H2   H13 H 0 1 N N N N N N 23.158 82.672 -6.700  -1.071 -0.902 -2.229 H2   SRC 44 
SRC H3   H14 H 0 1 N N N N N N 17.994 82.071 -9.946  -4.280 -2.457 -1.357 H3   SRC 45 
SRC H4   H15 H 0 1 N N N N N N 18.559 85.423 -5.694  -7.083 1.011  2.072  H4   SRC 46 
SRC H6   H16 H 0 1 N N N N N N 20.932 82.603 -5.532  -7.771 -1.933 2.982  H6   SRC 47 
SRC H23  H17 H 0 1 N N N N N N 22.023 85.626 -12.386 2.995  4.991  0.347  H23  SRC 48 
SRC H25  H18 H 0 1 N N N N N N 26.692 84.799 -14.059 4.657  4.124  1.258  H25  SRC 49 
SRC H24  H19 H 0 1 N N N N N N 24.913 83.586 -13.547 4.466  2.107  -0.050 H24  SRC 50 
SRC H29B H20 H 0 0 N N N N N N 29.251 82.785 -15.638 4.756  -1.263 -4.116 H29B SRC 51 
SRC H29A H21 H 0 0 N N N N N N 29.504 81.143 -16.126 3.759  -0.028 -3.565 H29A SRC 52 
SRC H30  H22 H 0 1 N N N N N N 28.528 79.458 -15.107 5.993  -2.549 -2.596 H30  SRC 53 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
SRC N29 C28  SING N N 1  
SRC C28 N30  SING N N 2  
SRC C28 N27  DOUB N N 3  
SRC N30 C31  SING N N 4  
SRC N27 C26  SING N N 5  
SRC O32 C31  DOUB N N 6  
SRC C31 C33  SING N N 7  
SRC C24 C22  SING N N 8  
SRC C24 C5   SING N N 9  
SRC O23 C22  SING N N 10 
SRC C26 C33  DOUB N N 11 
SRC C26 N4   SING N N 12 
SRC C33 N2   SING N N 13 
SRC C22 C7   SING N N 14 
SRC N4  C5   SING N N 15 
SRC N4  C3   SING N N 16 
SRC C5  O6   SING N N 17 
SRC N2  C3   SING N N 18 
SRC N2  C1   SING N N 19 
SRC C7  O6   SING N N 20 
SRC C7  C8   SING N N 21 
SRC O15 P14  DOUB N N 22 
SRC O9  C8   SING N N 23 
SRC O9  P10  SING N N 24 
SRC P14 O16  SING N N 25 
SRC P14 O13  SING N N 26 
SRC P14 O17  SING N N 27 
SRC O13 P10  SING N N 28 
SRC O12 P10  DOUB N N 29 
SRC P10 O11  SING N N 30 
SRC O17 P18  SING N N 31 
SRC P18 O20  DOUB N N 32 
SRC P18 O19  SING N N 33 
SRC P18 O21  SING N N 34 
SRC C5  H5   SING N N 35 
SRC C7  H7   SING N N 36 
SRC C8  H8A  SING N N 37 
SRC C8  H8B  SING N N 38 
SRC C22 H22  SING N N 39 
SRC C24 H24  SING N N 40 
SRC C1  H1A  SING N N 41 
SRC C1  H1C  SING N N 42 
SRC C1  H1B  SING N N 43 
SRC C3  H3B  SING N N 44 
SRC C3  H3A  SING N N 45 
SRC O11 H2   SING N N 46 
SRC O16 H3   SING N N 47 
SRC O19 H4   SING N N 48 
SRC O21 H6   SING N N 49 
SRC O23 H23  SING N N 50 
SRC O25 H25  SING N N 51 
SRC N29 H29B SING N N 52 
SRC N29 H29A SING N N 53 
SRC N30 H30  SING N N 54 
SRC C24 O25  SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
SRC InChI            InChI                1.06  "InChI=1S/C11H20N5O14P3/c1-15-3-16(8-5(15)9(19)14-11(12)13-8)10-7(18)6(17)4(28-10)2-27-32(23,24)30-33(25,26)29-31(20,21)22/h4,6-7,10,17-18H,2-3H2,1H3,(H,23,24)(H,25,26)(H2,20,21,22)(H3,12,13,14,19)/t4-,6-,7+,10-/m1/s1" 
SRC InChIKey         InChI                1.06  BUJQMJUTTBGELS-UHTZMRCNSA-N                                                                                                                                                                                                
SRC SMILES_CANONICAL CACTVS               3.385 "CN1CN([C@@H]2O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@@H]2O)C3=C1C(=O)NC(=N3)N"                                                                                                                             
SRC SMILES           CACTVS               3.385 "CN1CN([CH]2O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O)C3=C1C(=O)NC(=N3)N"                                                                                                                                    
SRC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CN(C2=C1C(=O)NC(=N2)N)[C@H]3C([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                       
SRC SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CN(C2=C1C(=O)NC(=N2)N)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O"                                                                                                                                                    
# 
_pdbx_chem_comp_identifier.comp_id           SRC 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "[[(2~{R},3~{S},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1,8-dihydropurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
SRC "Create component" 2022-12-19 PDBE 
SRC "Initial release"  2023-12-27 RCSB 
# 
