data_U3C
# 
_chem_comp.id                                    U3C 
_chem_comp.name                                  "N-(6-methylpyridin-2-yl)-D-prolinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H15 N3 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-08-29 
_chem_comp.pdbx_modified_date                    2023-11-24 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        205.256 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     U3C 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7GPF 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
U3C N1  N1  N 0 1 N N N N N N -3.892 -7.754  0.776  -3.140 0.723  -0.888 N1  U3C 1  
U3C C4  C1  C 0 1 Y N N N N N -5.641 -10.787 4.593  2.330  -1.749 -0.114 C4  U3C 2  
U3C C5  C2  C 0 1 Y N N N N N -6.193 -10.187 3.470  1.379  -0.739 -0.185 C5  U3C 3  
U3C C6  C3  C 0 1 N N N N N N -4.608 -8.296  3.204  -0.900 -0.100 -0.378 C6  U3C 4  
U3C C7  C4  C 0 1 N N R N N N -4.196 -7.338  2.143  -2.356 -0.466 -0.508 C7  U3C 5  
U3C C8  C5  C 0 1 N N N N N N -3.340 -6.172  2.579  -2.898 -0.955 0.852  C8  U3C 6  
U3C C10 C6  C 0 1 N N N N N N -2.756 -6.902  0.373  -4.121 1.003  0.183  C10 U3C 7  
U3C N   N2  N 0 1 N N N N N N -5.619 -9.102  2.809  0.042  -1.064 -0.410 N   U3C 8  
U3C C   C7  C 0 1 N N N N N N -8.755 -12.492 2.286  3.332  2.338  0.328  C   U3C 9  
U3C O   O1  O 0 1 N N N N N N -4.009 -8.337  4.276  -0.576 1.061  -0.246 O   U3C 10 
U3C C1  C8  C 0 1 Y N N N N N -7.641 -11.933 3.109  2.984  0.880  0.175  C1  U3C 11 
U3C C2  C9  C 0 1 Y N N N N N -7.113 -12.625 4.197  3.982  -0.072 0.252  C2  U3C 12 
U3C C3  C10 C 0 1 Y N N N N N -6.106 -12.040 4.941  3.654  -1.413 0.111  C3  U3C 13 
U3C C9  C11 C 0 1 N N N N N N -2.157 -6.289  1.649  -4.329 -0.357 0.894  C9  U3C 14 
U3C N2  N3  N 0 1 Y N N N N N -7.186 -10.723 2.756  1.730  0.529  -0.040 N2  U3C 15 
U3C H1  H1  H 0 1 N N N N N N -4.678 -7.601  0.177  -3.603 0.584  -1.774 H1  U3C 16 
U3C H3  H3  H 0 1 N N N N N N -4.876 -10.292 5.173  2.040  -2.783 -0.228 H3  U3C 17 
U3C H4  H4  H 0 1 N N N N N N -5.150 -6.817  1.978  -2.480 -1.247 -1.258 H4  U3C 18 
U3C H5  H5  H 0 1 N N N N N N -3.033 -6.272  3.631  -2.934 -2.044 0.884  H5  U3C 19 
U3C H6  H6  H 0 1 N N N N N N -3.865 -5.216  2.440  -2.291 -0.567 1.671  H6  U3C 20 
U3C H7  H7  H 0 1 N N N N N N -1.997 -7.508  -0.143 -3.720 1.739  0.881  H7  U3C 21 
U3C H8  H8  H 0 1 N N N N N N -3.106 -6.104  -0.298 -5.059 1.355  -0.244 H8  U3C 22 
U3C H9  H9  H 0 1 N N N N N N -6.011 -8.889  1.914  -0.210 -1.983 -0.590 H9  U3C 23 
U3C H10 H10 H 0 1 N N N N N N -9.021 -11.777 1.494  3.563  2.761  -0.650 H10 U3C 24 
U3C H11 H11 H 0 1 N N N N N N -8.434 -13.441 1.831  2.487  2.870  0.764  H11 U3C 25 
U3C H12 H12 H 0 1 N N N N N N -9.631 -12.671 2.927  4.200  2.438  0.980  H12 U3C 26 
U3C H13 H13 H 0 1 N N N N N N -7.486 -13.605 4.455  5.006  0.225  0.420  H13 U3C 27 
U3C H14 H14 H 0 1 N N N N N N -5.685 -12.559 5.789  4.415  -2.177 0.175  H14 U3C 28 
U3C H15 H15 H 0 1 N N N N N N -1.386 -6.947  2.076  -5.030 -0.984 0.342  H15 U3C 29 
U3C H16 H16 H 0 1 N N N N N N -1.721 -5.300  1.442  -4.662 -0.214 1.922  H16 U3C 30 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
U3C C10 N1  SING N N 1  
U3C C10 C9  SING N N 2  
U3C N1  C7  SING N N 3  
U3C C9  C8  SING N N 4  
U3C C7  C8  SING N N 5  
U3C C7  C6  SING N N 6  
U3C C   C1  SING N N 7  
U3C N2  C1  DOUB Y N 8  
U3C N2  C5  SING Y N 9  
U3C N   C6  SING N N 10 
U3C N   C5  SING N N 11 
U3C C1  C2  SING Y N 12 
U3C C6  O   DOUB N N 13 
U3C C5  C4  DOUB Y N 14 
U3C C2  C3  DOUB Y N 15 
U3C C4  C3  SING Y N 16 
U3C N1  H1  SING N N 17 
U3C C4  H3  SING N N 18 
U3C C7  H4  SING N N 19 
U3C C8  H5  SING N N 20 
U3C C8  H6  SING N N 21 
U3C C10 H7  SING N N 22 
U3C C10 H8  SING N N 23 
U3C N   H9  SING N N 24 
U3C C   H10 SING N N 25 
U3C C   H11 SING N N 26 
U3C C   H12 SING N N 27 
U3C C2  H13 SING N N 28 
U3C C3  H14 SING N N 29 
U3C C9  H15 SING N N 30 
U3C C9  H16 SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
U3C SMILES           ACDLabs              12.01 "O=C(Nc1cccc(C)n1)C1CCCN1"                                                                                    
U3C InChI            InChI                1.06  "InChI=1S/C11H15N3O/c1-8-4-2-6-10(13-8)14-11(15)9-5-3-7-12-9/h2,4,6,9,12H,3,5,7H2,1H3,(H,13,14,15)/t9-/m1/s1" 
U3C InChIKey         InChI                1.06  QILVMVSMHKJUDZ-SECBINFHSA-N                                                                                   
U3C SMILES_CANONICAL CACTVS               3.385 "Cc1cccc(NC(=O)[C@H]2CCCN2)n1"                                                                                
U3C SMILES           CACTVS               3.385 "Cc1cccc(NC(=O)[CH]2CCCN2)n1"                                                                                 
U3C SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)NC(=O)[C@H]2CCCN2"                                                                                
U3C SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)NC(=O)C2CCCN2"                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
U3C "SYSTEMATIC NAME" ACDLabs              12.01 "N-(6-methylpyridin-2-yl)-D-prolinamide"                       
U3C "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-~{N}-(6-methylpyridin-2-yl)pyrrolidine-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
U3C "Create component" 2023-08-29 RCSB 
U3C "Initial release"  2023-11-29 RCSB 
# 
