data_81D
# 
_chem_comp.id                                    81D 
_chem_comp.name                                  "(S)-3-(Aminomethyl)-4-chloro-7-(2-hydroxyethoxy)benzo[c][1,2]oxaborol-1(3H)-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 B Cl N6 O10 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;[(1R,5S,6R,8R,9'S)-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate
;
_chem_comp.pdbx_formal_charge                    -1 
_chem_comp.pdbx_initial_date                     2021-09-21 
_chem_comp.pdbx_modified_date                    2023-01-13 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        585.677 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     81D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7PQK 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
81D C4     C1  C  0  1 Y N N 19.618 6.376 92.846 -1.021 3.283  0.472  C4     81D 1  
81D C6     C2  C  0  1 Y N N 20.897 7.523 94.485 -1.398 5.565  1.152  C6     81D 2  
81D C8     C3  C  0  1 Y N N 19.410 7.909 91.317 -2.928 2.353  1.076  C8     81D 3  
81D C2     C4  C  0  1 Y N N 20.124 5.349 94.802 0.580  4.902  0.164  C2     81D 4  
81D C5     C5  C  0  1 Y N N 20.291 7.528 93.229 -1.867 4.244  1.049  C5     81D 5  
81D N1     N1  N  0  1 Y N N 20.832 6.397 95.246 -0.179 5.840  0.700  N1     81D 6  
81D O1     O1  O  0  1 N N N 14.419 6.653 88.428 1.952  -1.597 1.705  O1     81D 7  
81D O3P    O2  O  0  1 N N N 21.782 4.449 85.946 -5.990 -2.963 0.704  O3P    81D 8  
81D P      P1  P  0  1 N N N 22.353 4.813 87.320 -5.334 -3.302 -0.578 P      81D 9  
81D O1P    O3  O  0  1 N N N 22.953 6.219 87.230 -4.927 -4.860 -0.577 O1P    81D 10 
81D O2P    O4  O  0  1 N N N 23.277 3.826 87.851 -6.350 -3.013 -1.793 O2P    81D 11 
81D "O5'"  O5  O  0  1 N N N 21.163 4.944 88.345 -4.011 -2.402 -0.759 "O5'"  81D 12 
81D "C5'"  C6  C  0  1 N N N 20.241 6.015 88.291 -2.964 -2.354 0.212  "C5'"  81D 13 
81D "C4'"  C7  C  0  1 N N R 18.854 5.549 88.623 -1.864 -1.407 -0.271 "C4'"  81D 14 
81D "C3'"  C8  C  0  1 N N S 17.771 6.630 88.702 -0.676 -1.444 0.707  "C3'"  81D 15 
81D "O3'"  O6  O  0  1 N N N 16.731 6.465 87.756 0.537  -1.690 -0.044 "O3'"  81D 16 
81D "O4'"  O7  O  0  1 N N N 18.913 4.910 89.944 -2.357 -0.058 -0.297 "O4'"  81D 17 
81D "C1'"  C9  C  0  1 N N R 18.200 5.679 90.875 -1.243 0.803  0.014  "C1'"  81D 18 
81D "C2'"  C10 C  0  1 N N R 17.138 6.428 90.072 -0.486 0.046  1.132  "C2'"  81D 19 
81D "O2'"  O8  O  0  1 N N N 16.024 5.571 89.792 0.927  0.264  0.957  "O2'"  81D 20 
81D B      B1  B  -1 1 N N N 15.625 5.700 88.497 1.486  -0.932 0.599  B      81D 21 
81D C12    C11 C  0  1 Y N N 14.969 4.454 87.714 2.716  -0.708 -0.328 C12    81D 22 
81D C16    C12 C  0  1 Y N N 15.549 3.279 87.267 2.973  0.139  -1.389 C16    81D 23 
81D O35    O9  O  0  1 N N N 16.889 3.147 87.317 2.022  1.013  -1.810 O35    81D 24 
81D C36    C13 C  0  1 N N N 17.593 2.055 86.741 2.359  1.857  -2.913 C36    81D 25 
81D C15    C14 C  0  1 Y N N 14.720 2.280 86.707 4.208  0.093  -2.024 C15    81D 26 
81D C14    C15 C  0  1 Y N N 13.376 2.442 86.616 5.173  -0.797 -1.594 C14    81D 27 
81D C10    C16 C  0  1 N N S 13.169 5.946 88.234 3.086  -2.362 1.258  C10    81D 28 
81D C33    C17 C  0  1 N N N 12.468 5.744 89.541 4.109  -2.493 2.389  C33    81D 29 
81D N34    N2  N  0  1 N N N 13.350 5.058 90.538 3.540  -3.307 3.471  N34    81D 30 
81D C11    C18 C  0  1 Y N N 13.614 4.596 87.621 3.688  -1.600 0.101  C11    81D 31 
81D C13    C19 C  0  1 Y N N 12.770 3.605 87.058 4.913  -1.645 -0.530 C13    81D 32 
81D CL     CL1 CL 0  0 N N N 11.107 3.871 86.882 6.128  -2.762 0.009  CL     81D 33 
81D N9     N3  N  0  1 Y N N 19.072 6.623 91.629 -1.717 2.100  0.502  N9     81D 34 
81D N7     N4  N  0  1 Y N N 20.144 8.476 92.218 -3.016 3.612  1.391  N7     81D 35 
81D N6     N5  N  0  1 N N N 21.568 8.610 94.944 -2.186 6.556  1.711  N6     81D 36 
81D N3     N6  N  0  1 Y N N 19.532 5.248 93.603 0.182  3.652  0.047  N3     81D 37 
81D C37    C20 C  0  1 N N N 19.064 2.398 86.617 1.173  2.766  -3.241 C37    81D 38 
81D O37    O10 O  0  1 N N N 19.309 3.519 85.804 0.934  3.652  -2.146 O37    81D 39 
81D H81    H1  H  0  1 N N N 19.096 8.403 90.409 -3.700 1.617  1.243  H81    81D 40 
81D H21    H2  H  0  1 N N N 20.021 4.508 95.472 1.564  5.169  -0.192 H21    81D 41 
81D H1     H3  H  0  1 N N N 22.841 6.556 86.349 -4.492 -5.153 -1.390 H1     81D 42 
81D H2     H4  H  0  1 N N N 23.365 3.110 87.233 -7.171 -3.522 -1.749 H2     81D 43 
81D "H5'2" H5  H  0  0 N N N 20.544 6.787 89.014 -3.364 -1.993 1.160  "H5'2" 81D 44 
81D "H5'1" H6  H  0  0 N N N 20.244 6.441 87.277 -2.550 -3.353 0.350  "H5'1" 81D 45 
81D "H4'1" H7  H  0  0 N N N 18.544 4.804 87.876 -1.533 -1.702 -1.267 "H4'1" 81D 46 
81D "H3'1" H8  H  0  0 N N N 18.228 7.628 88.638 -0.827 -2.123 1.546  "H3'1" 81D 47 
81D "H1'1" H9  H  0  0 N N N 17.689 5.021 91.593 -0.606 0.934  -0.860 "H1'1" 81D 48 
81D "H2'1" H10 H  0  0 N N N 16.856 7.380 90.545 -0.852 0.268  2.135  "H2'1" 81D 49 
81D H362   H11 H  0  0 N N N 17.183 1.842 85.743 3.223  2.468  -2.652 H362   81D 50 
81D H361   H12 H  0  0 N N N 17.478 1.168 87.382 2.597  1.242  -3.781 H361   81D 51 
81D H151   H13 H  0  0 N N N 15.167 1.367 86.343 4.413  0.753  -2.853 H151   81D 52 
81D H141   H14 H  0  0 N N N 12.771 1.653 86.193 6.132  -0.832 -2.089 H141   81D 53 
81D H3     H15 H  0  1 N N N 12.517 6.479 87.526 2.764  -3.350 0.929  H3     81D 54 
81D H332   H16 H  0  0 N N N 12.171 6.724 89.942 5.011  -2.973 2.009  H332   81D 55 
81D H331   H17 H  0  0 N N N 11.572 5.129 89.374 4.357  -1.503 2.771  H331   81D 56 
81D H341   H18 H  0  0 N N N 12.853 4.939 91.397 4.197  -3.409 4.231  H341   81D 57 
81D H342   H19 H  0  0 N N N 13.621 4.163 90.183 2.668  -2.918 3.797  H342   81D 58 
81D H62    H21 H  0  1 N N N 21.948 8.411 95.847 -1.850 7.463  1.776  H62    81D 59 
81D H61    H22 H  0  1 N N N 22.310 8.835 94.312 -3.074 6.342  2.037  H61    81D 60 
81D H5     H23 H  0  1 N N N 19.589 1.533 86.185 1.396  3.346  -4.137 H5     81D 61 
81D H6     H24 H  0  1 N N N 19.460 2.603 87.622 0.286  2.156  -3.416 H6     81D 62 
81D H7     H25 H  0  1 N N N 20.212 3.794 85.907 0.194  4.259  -2.285 H7     81D 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
81D O37   C37    SING N N 1  
81D O3P   P      DOUB N N 2  
81D C14   C15    DOUB Y N 3  
81D C14   C13    SING Y N 4  
81D C37   C36    SING N N 5  
81D C15   C16    SING Y N 6  
81D C36   O35    SING N N 7  
81D CL    C13    SING N N 8  
81D C13   C11    DOUB Y N 9  
81D O1P   P      SING N N 10 
81D C16   O35    SING N N 11 
81D C16   C12    DOUB Y N 12 
81D P     O2P    SING N N 13 
81D P     "O5'"  SING N N 14 
81D C11   C12    SING Y N 15 
81D C11   C10    SING N N 16 
81D C12   B      SING N N 17 
81D "O3'" B      SING N N 18 
81D "O3'" "C3'"  SING N N 19 
81D C10   O1     SING N N 20 
81D C10   C33    SING N N 21 
81D "C5'" "O5'"  SING N N 22 
81D "C5'" "C4'"  SING N N 23 
81D O1    B      SING N N 24 
81D B     "O2'"  SING N N 25 
81D "C4'" "C3'"  SING N N 26 
81D "C4'" "O4'"  SING N N 27 
81D "C3'" "C2'"  SING N N 28 
81D C33   N34    SING N N 29 
81D "O2'" "C2'"  SING N N 30 
81D "O4'" "C1'"  SING N N 31 
81D "C2'" "C1'"  SING N N 32 
81D "C1'" N9     SING N N 33 
81D C8    N9     SING Y N 34 
81D C8    N7     DOUB Y N 35 
81D N9    C4     SING Y N 36 
81D N7    C5     SING Y N 37 
81D C4    C5     DOUB Y N 38 
81D C4    N3     SING Y N 39 
81D C5    C6     SING Y N 40 
81D N3    C2     DOUB Y N 41 
81D C6    N6     SING N N 42 
81D C6    N1     DOUB Y N 43 
81D C2    N1     SING Y N 44 
81D C8    H81    SING N N 45 
81D C2    H21    SING N N 46 
81D O1P   H1     SING N N 47 
81D O2P   H2     SING N N 48 
81D "C5'" "H5'2" SING N N 49 
81D "C5'" "H5'1" SING N N 50 
81D "C4'" "H4'1" SING N N 51 
81D "C3'" "H3'1" SING N N 52 
81D "C1'" "H1'1" SING N N 53 
81D "C2'" "H2'1" SING N N 54 
81D C36   H362   SING N N 55 
81D C36   H361   SING N N 56 
81D C15   H151   SING N N 57 
81D C14   H141   SING N N 58 
81D C10   H3     SING N N 59 
81D C33   H332   SING N N 60 
81D C33   H331   SING N N 61 
81D N34   H341   SING N N 62 
81D N34   H342   SING N N 63 
81D N6    H62    SING N N 64 
81D N6    H61    SING N N 65 
81D C37   H5     SING N N 66 
81D C37   H6     SING N N 67 
81D O37   H7     SING N N 68 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
81D InChI            InChI                1.06  "InChI=1S/C20H24BClN6O10P/c22-9-1-2-10(33-4-3-29)14-13(9)11(5-23)36-21(14)37-16-12(6-34-39(30,31)32)35-20(17(16)38-21)28-8-27-15-18(24)25-7-26-19(15)28/h1-2,7-8,11-12,16-17,20,29H,3-6,23H2,(H2,24,25,26)(H2,30,31,32)/q-1/t11-,12-,16-,17-,20-,21+/m1/s1" 
81D InChIKey         InChI                1.06  YICHWMJUJYFTAX-RIMGRJFKSA-N                                                                                                                                                                                                                                 
81D SMILES_CANONICAL CACTVS               3.385 "NC[C@H]1O[B-]2(O[C@@H]3[C@@H](CO[P](O)(O)=O)O[C@H]([C@@H]3O2)n4cnc5c(N)ncnc45)c6c(OCCO)ccc(Cl)c16"                                                                                                                                                         
81D SMILES           CACTVS               3.385 "NC[CH]1O[B-]2(O[CH]3[CH](CO[P](O)(O)=O)O[CH]([CH]3O2)n4cnc5c(N)ncnc45)c6c(OCCO)ccc(Cl)c16"                                                                                                                                                                 
81D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]12(c3c(ccc(c3[C@H](O1)CN)Cl)OCCO)O[C@@H]4[C@H](O[C@H]([C@@H]4O2)n5cnc6c5ncnc6N)COP(=O)(O)O"                                                                                                                                                            
81D SMILES           "OpenEye OEToolkits" 2.0.7 "[B-]12(c3c(ccc(c3C(O1)CN)Cl)OCCO)OC4C(OC(C4O2)n5cnc6c5ncnc6N)COP(=O)(O)O"                                                                                                                                                                                  
# 
_pdbx_chem_comp_identifier.comp_id           81D 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        
;[(1~{R},5~{S},6~{R},8~{R},9'~{S})-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate
;
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      81D 
_pdbx_chem_comp_synonyms.name         
;[(1R,5S,6R,8R,9'S)-9'-(aminomethyl)-8-(6-aminopurin-9-yl)-2'-chloranyl-5'-(2-hydroxyethyloxy)spiro[2,4,7-trioxa-3-boranuidabicyclo[3.3.0]octane-3,7'-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-triene]-6-yl]methyl dihydrogen phosphate
;
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
81D "Create component"  2021-09-21 PDBE 
81D "Modify descriptor" 2022-08-22 RCSB 
81D "Initial release"   2023-01-18 RCSB 
# 
