data_8DD
# 
_chem_comp.id                                    8DD 
_chem_comp.name                                  "8-oxo-7,8-dihydro-2'-deoxy-adenosine-5'-diphosphate" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H15 N5 O10 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-01-09 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        427.201 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     8DD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3ACA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
8DD N1     N1     N 0 1 Y N N -18.632 23.299 78.850 -6.313 2.128  0.971  N1     8DD 1  
8DD C2     C2     C 0 1 Y N N -18.188 22.260 78.133 -5.670 1.567  1.977  C2     8DD 2  
8DD N3     N3     N 0 1 Y N N -18.876 21.237 77.632 -4.641 0.765  1.794  N3     8DD 3  
8DD C4     C4     C 0 1 Y N N -20.180 21.343 77.932 -4.207 0.488  0.569  C4     8DD 4  
8DD C5     C5     C 0 1 Y N N -20.784 22.350 78.656 -4.859 1.061  -0.525 C5     8DD 5  
8DD C6     C6     C 0 1 Y N N -19.949 23.379 79.134 -5.944 1.903  -0.288 C6     8DD 6  
8DD N6     N6     N 0 1 N N N -20.395 24.416 79.849 -6.624 2.496  -1.342 N6     8DD 7  
8DD N7     N7     N 0 1 N N N -22.145 22.122 78.761 -4.207 0.607  -1.668 N7     8DD 8  
8DD C8     C8     C 0 1 N N N -22.341 20.998 78.109 -3.203 -0.205 -1.282 C8     8DD 9  
8DD O8     O8     O 0 1 N N N -23.439 20.485 77.993 -2.431 -0.772 -2.033 O8     8DD 10 
8DD N9     N9     N 0 1 N N N -21.187 20.474 77.581 -3.183 -0.291 0.062  N9     8DD 11 
8DD PA     PA     P 0 1 N N N -23.458 18.048 71.949 3.503  -0.586 -0.299 PA     8DD 12 
8DD PB     PB     P 0 1 N N N -25.959 17.956 73.477 5.371  1.651  0.248  PB     8DD 13 
8DD "C1'"  "C1'"  C 0 1 N N R -20.985 19.240 76.793 -2.236 -1.079 0.854  "C1'"  8DD 14 
8DD O1A    O1A    O 0 1 N N N -23.075 16.661 72.306 3.333  -0.149 -1.702 O1A    8DD 15 
8DD O1B    O1B    O 0 1 N N N -25.762 16.626 74.311 5.955  2.217  1.637  O1B    8DD 16 
8DD "C2'"  "C2'"  C 0 1 N N N -22.192 18.331 76.638 -2.436 -2.580 0.569  "C2'"  8DD 17 
8DD O2A    O2A    O 0 1 N N N -23.903 18.326 70.552 4.438  -1.895 -0.254 O2A    8DD 18 
8DD O2B    O2B    O 0 1 N N N -26.777 17.929 72.293 6.453  0.979  -0.505 O2B    8DD 19 
8DD "C3'"  "C3'"  C 0 1 N N S -21.921 17.643 75.305 -1.057 -3.055 0.049  "C3'"  8DD 20 
8DD "O3'"  "O3'"  O 0 1 N N N -20.996 16.576 75.483 -0.720 -4.334 0.589  "O3'"  8DD 21 
8DD O3A    O3A    O 0 1 N N N -24.577 18.585 73.007 4.193  0.595  0.551  O3A    8DD 22 
8DD O3B    O3B    O 0 1 N N N -26.507 18.991 74.366 4.787  2.870  -0.626 O3B    8DD 23 
8DD "C4'"  "C4'"  C 0 1 N N R -21.249 18.751 74.505 -0.109 -1.957 0.596  "C4'"  8DD 24 
8DD "O4'"  "O4'"  O 0 1 N N N -20.597 19.599 75.476 -0.889 -0.748 0.477  "O4'"  8DD 25 
8DD "C5'"  "C5'"  C 0 1 N N N -22.222 19.571 73.688 1.159  -1.866 -0.257 "C5'"  8DD 26 
8DD "O5'"  "O5'"  O 0 1 N N N -22.294 19.053 72.348 2.064  -0.932 0.334  "O5'"  8DD 27 
8DD H2     H2     H 0 1 N N N -17.127 22.250 77.934 -5.999 1.772  2.985  H2     8DD 28 
8DD HN6    HN6    H 0 1 N N N -19.629 25.016 80.080 -7.378 3.080  -1.166 HN6    8DD 29 
8DD HN6A   HN6A   H 0 0 N N N -21.068 24.926 79.313 -6.346 2.325  -2.256 HN6A   8DD 30 
8DD HN7    HN7    H 0 1 N N N -22.826 22.686 79.228 -4.435 0.836  -2.583 HN7    8DD 31 
8DD "H1'"  "H1'"  H 0 1 N N N -20.230 18.678 77.363 -2.385 -0.881 1.915  "H1'"  8DD 32 
8DD HO1B   HO1B   H 0 0 N N N -26.243 15.919 73.898 6.669  2.860  1.530  HO1B   8DD 33 
8DD "H2'"  "H2'"  H 0 1 N N N -22.268 17.608 77.463 -2.701 -3.111 1.484  "H2'"  8DD 34 
8DD "H2'A" "H2'A" H 0 0 N N N -23.133 18.900 76.621 -3.201 -2.726 -0.193 "H2'A" 8DD 35 
8DD HO2A   HO2A   H 0 0 N N N -23.879 17.522 70.046 4.593  -2.238 0.637  HO2A   8DD 36 
8DD "H3'"  "H3'"  H 0 1 N N N -22.822 17.220 74.837 -1.039 -3.078 -1.041 "H3'"  8DD 37 
8DD "HO3'" "HO3'" H 0 0 N N N -20.834 16.154 74.647 -1.339 -5.038 0.348  "HO3'" 8DD 38 
8DD HO3B   HO3B   H 0 0 N N N -27.263 19.394 73.955 4.072  3.357  -0.193 HO3B   8DD 39 
8DD "H4'"  "H4'"  H 0 1 N N N -20.550 18.308 73.780 0.142  -2.151 1.639  "H4'"  8DD 40 
8DD "H5'"  "H5'"  H 0 1 N N N -23.218 19.522 74.151 1.632  -2.847 -0.310 "H5'"  8DD 41 
8DD "H5'A" "H5'A" H 0 0 N N N -21.881 20.616 73.657 0.898  -1.534 -1.262 "H5'A" 8DD 42 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
8DD N1    C2     DOUB Y N 1  
8DD N1    C6     SING Y N 2  
8DD C2    N3     SING Y N 3  
8DD N3    C4     DOUB Y N 4  
8DD C4    C5     SING Y N 5  
8DD C4    N9     SING N N 6  
8DD C5    C6     DOUB Y N 7  
8DD C5    N7     SING N N 8  
8DD C6    N6     SING N N 9  
8DD N7    C8     SING N N 10 
8DD C8    O8     DOUB N N 11 
8DD C8    N9     SING N N 12 
8DD N9    "C1'"  SING N N 13 
8DD PA    O1A    DOUB N N 14 
8DD PA    O2A    SING N N 15 
8DD PA    O3A    SING N N 16 
8DD PA    "O5'"  SING N N 17 
8DD PB    O1B    SING N N 18 
8DD PB    O2B    DOUB N N 19 
8DD PB    O3A    SING N N 20 
8DD PB    O3B    SING N N 21 
8DD "C1'" "C2'"  SING N N 22 
8DD "C1'" "O4'"  SING N N 23 
8DD "C2'" "C3'"  SING N N 24 
8DD "C3'" "O3'"  SING N N 25 
8DD "C3'" "C4'"  SING N N 26 
8DD "C4'" "O4'"  SING N N 27 
8DD "C4'" "C5'"  SING N N 28 
8DD "C5'" "O5'"  SING N N 29 
8DD C2    H2     SING N N 30 
8DD N6    HN6    SING N N 31 
8DD N6    HN6A   SING N N 32 
8DD N7    HN7    SING N N 33 
8DD "C1'" "H1'"  SING N N 34 
8DD O1B   HO1B   SING N N 35 
8DD "C2'" "H2'"  SING N N 36 
8DD "C2'" "H2'A" SING N N 37 
8DD O2A   HO2A   SING N N 38 
8DD "C3'" "H3'"  SING N N 39 
8DD "O3'" "HO3'" SING N N 40 
8DD O3B   HO3B   SING N N 41 
8DD "C4'" "H4'"  SING N N 42 
8DD "C5'" "H5'"  SING N N 43 
8DD "C5'" "H5'A" SING N N 44 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
8DD SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2N([C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(O)=O)O3)C(=O)Nc12"                                                                                                             
8DD SMILES           CACTVS               3.352 "Nc1ncnc2N([CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(O)=O)O3)C(=O)Nc12"                                                                                                                 
8DD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)N(C(=O)N2)[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O)N"                                                                                                          
8DD SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)N(C(=O)N2)C3CC(C(O3)COP(=O)(O)OP(=O)(O)O)O)N"                                                                                                                          
8DD InChI            InChI                1.03  "InChI=1S/C10H15N5O10P2/c11-8-7-9(13-3-12-8)15(10(17)14-7)6-1-4(16)5(24-6)2-23-27(21,22)25-26(18,19)20/h3-6,16H,1-2H2,(H,14,17)(H,21,22)(H2,11,12,13)(H2,18,19,20)/t4-,5+,6+/m0/s1" 
8DD InChIKey         InChI                1.03  FEPFWQCDWZFLGY-KVQBGUIXSA-N                                                                                                                                                         
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
8DD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(2R,3S,5R)-5-(6-azanyl-8-oxo-7H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
8DD "Create component"     2010-01-09 PDBJ 
8DD "Modify aromatic_flag" 2011-06-04 RCSB 
8DD "Modify descriptor"    2011-06-04 RCSB 
# 
