data_A3D
# 
_chem_comp.id                                    A3D 
_chem_comp.name                                  "3-ACETYLPYRIDINE ADENINE DINUCLEOTIDE" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H28 N6 O14 P2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2003-07-17 
_chem_comp.pdbx_modified_date                    2012-01-05 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         NAC 
_chem_comp.formula_weight                        662.437 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A3D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1PZG 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A3D PA   AP   P 0  1 N N R 3.359  16.487 85.569 -0.989  2.580  -1.351 PA   A3D 1  
A3D O1A  AO1  O 0  1 N N N 2.483  15.453 86.013 -0.478  2.792  -2.724 O1A  A3D 2  
A3D O2A  AO2  O 0  1 N N N 3.948  17.424 86.626 -1.861  3.856  -0.900 O2A  A3D 3  
A3D O5B  AO5* O 0  1 N N N 4.554  15.788 84.813 -1.911  1.261  -1.319 O5B  A3D 4  
A3D C5B  AC5* C 0  1 N N N 5.580  16.567 84.166 -3.033  1.075  -2.185 C5B  A3D 5  
A3D C4B  AC4* C 0  1 N N R 6.690  15.519 84.286 -3.684  -0.279 -1.893 C4B  A3D 6  
A3D O4B  AO4* O 0  1 N N N 7.936  15.951 83.612 -4.260  -0.270 -0.576 O4B  A3D 7  
A3D C3B  AC3* C 0  1 N N S 7.178  15.093 85.738 -4.828  -0.537 -2.892 C3B  A3D 8  
A3D O3B  AO3* O 0  1 N N N 7.090  13.675 85.885 -4.574  -1.722 -3.648 O3B  A3D 9  
A3D C2B  AC2* C 0  1 N N R 8.599  15.651 85.823 -6.078  -0.721 -1.997 C2B  A3D 10 
A3D O2B  AO2* O 0  1 N N N 9.499  14.899 86.640 -6.900  -1.785 -2.482 O2B  A3D 11 
A3D C1B  AC1* C 0  1 N N R 9.040  15.592 84.382 -5.448  -1.089 -0.630 C1B  A3D 12 
A3D N9A  AN9  N 0  1 Y N N 10.205 16.380 84.133 -6.358  -0.750 0.466  N9A  A3D 13 
A3D C8A  AC8  C 0  1 Y N N 10.655 17.556 84.680 -6.405  0.435  1.139  C8A  A3D 14 
A3D N7A  AN7  N 0  1 Y N N 11.822 17.938 84.221 -7.333  0.393  2.050  N7A  A3D 15 
A3D C5A  AC5  C 0  1 Y N N 12.148 16.954 83.318 -7.939  -0.819 2.020  C5A  A3D 16 
A3D C6A  AC6  C 0  1 Y N N 13.279 16.816 82.516 -8.979  -1.421 2.748  C6A  A3D 17 
A3D N6A  AN6  N 0  1 N N N 14.346 17.653 82.460 -9.626  -0.734 3.761  N6A  A3D 18 
A3D N1A  AN1  N 0  1 Y N N 13.329 15.692 81.678 -9.328  -2.667 2.442  N1A  A3D 19 
A3D C2A  AC2  C 0  1 Y N N 12.289 14.746 81.650 -8.717  -3.330 1.477  C2A  A3D 20 
A3D N3A  AN3  N 0  1 Y N N 11.158 14.860 82.446 -7.738  -2.806 0.769  N3A  A3D 21 
A3D C4A  AC4  C 0  1 Y N N 11.136 15.982 83.258 -7.325  -1.564 1.000  C4A  A3D 22 
A3D O3   O3   O 0  1 N N N 2.676  17.370 84.465 0.250   2.393  -0.340 O3   A3D 23 
A3D PN   NP   P 0  1 N N N 1.582  17.093 83.348 1.649   3.162  -0.131 PN   A3D 24 
A3D O1N  NO1  O 0  1 N N N 0.220  17.168 83.968 2.249   3.523  -1.508 O1N  A3D 25 
A3D O2N  NO2  O -1 1 N N N 1.963  15.811 82.702 1.410   4.455  0.681  O2N  A3D 26 
A3D O5D  NO5* O 0  1 N N N 1.775  18.355 82.415 2.672   2.208  0.666  O5D  A3D 27 
A3D C5D  NC5* C 0  1 N N N 2.989  18.371 81.579 4.033   2.564  0.917  C5D  A3D 28 
A3D C4D  NC4* C 0  1 N N R 3.113  19.680 80.842 4.719   1.439  1.694  C4D  A3D 29 
A3D O4D  NO4* O 0  1 N N N 2.042  19.859 79.899 4.814   0.263  0.872  O4D  A3D 30 
A3D C3D  NC3* C 0  1 N N S 3.118  20.994 81.718 6.156   1.857  2.062  C3D  A3D 31 
A3D O3D  NO3* O 0  1 N N N 4.135  21.907 81.251 6.329   1.858  3.481  O3D  A3D 32 
A3D C2D  NC2* C 0  1 N N R 1.711  21.513 81.509 7.046   0.771  1.409  C2D  A3D 33 
A3D O2D  NO2* O 0  1 N N N 1.597  22.909 81.726 8.115   0.396  2.281  O2D  A3D 34 
A3D C1D  NC1* C 0  1 N N R 1.496  21.181 80.098 6.047   -0.399 1.224  C1D  A3D 35 
A3D N1N  NN1  N 1  1 Y N N 0.111  21.128 79.587 6.485   -1.284 0.141  N1N  A3D 36 
A3D C2N  NC2  C 0  1 Y N N -0.179 21.688 78.348 7.024   -2.446 0.443  C2N  A3D 37 
A3D C3N  NC3  C 0  1 Y N N -1.477 21.643 77.879 7.451   -3.315 -0.566 C3N  A3D 38 
A3D C7N  NC7  C 0  1 N N N -1.769 22.262 76.528 8.054   -4.615 -0.229 C7N  A3D 39 
A3D O7N  NO7  O 0  1 N N N -2.921 22.201 76.136 8.182   -4.941 0.932  O7N  A3D 40 
A3D C8N  NC8  C 0  1 N N N -0.666 22.914 75.726 8.510   -5.540 -1.327 C8N  A3D 41 
A3D C4N  NC4  C 0  1 Y N N -2.542 21.016 78.657 7.296   -2.925 -1.904 C4N  A3D 42 
A3D C5N  NC5  C 0  1 Y N N -2.205 20.460 79.920 6.724   -1.693 -2.166 C5N  A3D 43 
A3D C6N  NC6  C 0  1 Y N N -0.870 20.501 80.418 6.322   -0.895 -1.110 C6N  A3D 44 
A3D HOA2 2HOA H 0  0 N N N 4.070  16.948 87.439 -2.229  3.786  -0.008 HOA2 A3D 45 
A3D H51A AH51 H 0  0 N N N 5.789  17.560 84.592 -3.759  1.871  -2.015 H51A A3D 46 
A3D H52A AH52 H 0  0 N N N 5.342  16.852 83.131 -2.700  1.102  -3.222 H52A A3D 47 
A3D H4B  AH4* H 0  1 N N N 6.177  14.661 83.826 -2.939  -1.071 -1.966 H4B  A3D 48 
A3D H3B  AH3* H 0  1 N N N 6.565  15.486 86.563 -4.955  0.318  -3.556 H3B  A3D 49 
A3D HO3A AHO3 H 0  0 N N N 7.070  13.268 85.027 -5.264  -1.933 -4.292 HO3A A3D 50 
A3D H2B  AH2* H 0  1 N N N 8.607  16.646 86.293 -6.647  0.206  -1.927 H2B  A3D 51 
A3D HO2A AHO2 H 0  0 N N N 10.301 14.732 86.158 -7.245  -1.640 -3.374 HO2A A3D 52 
A3D H1B  AH1* H 0  1 N N N 9.362  14.576 84.109 -5.186  -2.147 -0.600 H1B  A3D 53 
A3D H8A  AH8  H 0  1 N N N 10.100 18.114 85.419 -5.767  1.284  0.944  H8A  A3D 54 
A3D H61A AH61 H 0  0 N N N 14.130 18.501 82.943 -9.363  0.175  3.975  H61A A3D 55 
A3D H62A AH62 H 0  0 N N N 14.559 17.859 81.505 -10.342 -1.161 4.256  H62A A3D 56 
A3D H2A  AH2  H 0  1 N N N 12.374 13.900 80.985 -9.031  -4.340 1.261  H2A  A3D 57 
A3D H51N NH51 H 0  0 N N N 2.923  17.556 80.843 4.549   2.717  -0.031 H51N A3D 58 
A3D H52N NH52 H 0  0 N N N 3.870  18.237 82.223 4.067   3.483  1.502  H52N A3D 59 
A3D H4D  NH4* H 0  1 N N N 4.104  19.574 80.376 4.153   1.214  2.598  H4D  A3D 60 
A3D H3D  NH3* H 0  1 N N N 3.357  20.844 82.781 6.385   2.839  1.650  H3D  A3D 61 
A3D HO3N NHO3 H 0  0 N N N 3.985  22.107 80.335 7.216   2.114  3.769  HO3N A3D 62 
A3D H2D  NH2* H 0  1 N N N 0.980  21.080 82.208 7.432   1.111  0.448  H2D  A3D 63 
A3D HO2N NHO2 H 0  0 N N N 1.571  23.084 82.659 8.717   1.121  2.499  HO2N A3D 64 
A3D H1D  NH1* H 0  1 N N N 1.968  22.010 79.550 5.932   -0.957 2.153  H1D  A3D 65 
A3D H2N  NH2  H 0  1 N N N 0.600  22.152 77.761 7.136   -2.731 1.479  H2N  A3D 66 
A3D H81N NH81 H 0  0 N N N 0.220  22.262 75.723 9.551   -5.328 -1.572 H81N A3D 67 
A3D H82N NH82 H 0  0 N N N -0.407 23.882 76.179 8.420   -6.574 -0.992 H82N A3D 68 
A3D H83N NH83 H 0  0 N N N -1.008 23.072 74.693 7.890   -5.390 -2.211 H83N A3D 69 
A3D H4N  NH4  H 0  1 N N N -3.555 20.976 78.284 7.615   -3.570 -2.710 H4N  A3D 70 
A3D H5N  NH5  H 0  1 N N N -2.977 19.996 80.516 6.589   -1.360 -3.184 H5N  A3D 71 
A3D H6N  NH6  H 0  1 N N N -0.611 20.078 81.378 5.872   0.066  -1.312 H6N  A3D 72 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A3D PA  O1A  DOUB N N 1  
A3D PA  O2A  SING N N 2  
A3D PA  O5B  SING N N 3  
A3D PA  O3   SING N N 4  
A3D O2A HOA2 SING N N 5  
A3D O5B C5B  SING N N 6  
A3D C5B C4B  SING N N 7  
A3D C5B H51A SING N N 8  
A3D C5B H52A SING N N 9  
A3D C4B O4B  SING N N 10 
A3D C4B C3B  SING N N 11 
A3D C4B H4B  SING N N 12 
A3D O4B C1B  SING N N 13 
A3D C3B O3B  SING N N 14 
A3D C3B C2B  SING N N 15 
A3D C3B H3B  SING N N 16 
A3D O3B HO3A SING N N 17 
A3D C2B O2B  SING N N 18 
A3D C2B C1B  SING N N 19 
A3D C2B H2B  SING N N 20 
A3D O2B HO2A SING N N 21 
A3D C1B N9A  SING N N 22 
A3D C1B H1B  SING N N 23 
A3D N9A C8A  SING Y N 24 
A3D N9A C4A  SING Y N 25 
A3D C8A N7A  DOUB Y N 26 
A3D C8A H8A  SING N N 27 
A3D N7A C5A  SING Y N 28 
A3D C5A C6A  DOUB Y N 29 
A3D C5A C4A  SING Y N 30 
A3D C6A N6A  SING N N 31 
A3D C6A N1A  SING Y N 32 
A3D N6A H61A SING N N 33 
A3D N6A H62A SING N N 34 
A3D N1A C2A  DOUB Y N 35 
A3D C2A N3A  SING Y N 36 
A3D C2A H2A  SING N N 37 
A3D N3A C4A  DOUB Y N 38 
A3D O3  PN   SING N N 39 
A3D PN  O1N  DOUB N N 40 
A3D PN  O2N  SING N N 41 
A3D PN  O5D  SING N N 42 
A3D O5D C5D  SING N N 43 
A3D C5D C4D  SING N N 44 
A3D C5D H51N SING N N 45 
A3D C5D H52N SING N N 46 
A3D C4D O4D  SING N N 47 
A3D C4D C3D  SING N N 48 
A3D C4D H4D  SING N N 49 
A3D O4D C1D  SING N N 50 
A3D C3D O3D  SING N N 51 
A3D C3D C2D  SING N N 52 
A3D C3D H3D  SING N N 53 
A3D O3D HO3N SING N N 54 
A3D C2D O2D  SING N N 55 
A3D C2D C1D  SING N N 56 
A3D C2D H2D  SING N N 57 
A3D O2D HO2N SING N N 58 
A3D C1D N1N  SING N N 59 
A3D C1D H1D  SING N N 60 
A3D N1N C2N  DOUB Y N 61 
A3D N1N C6N  SING Y N 62 
A3D C2N C3N  SING Y N 63 
A3D C2N H2N  SING N N 64 
A3D C3N C7N  SING N N 65 
A3D C3N C4N  DOUB Y N 66 
A3D C7N O7N  DOUB N N 67 
A3D C7N C8N  SING N N 68 
A3D C8N H81N SING N N 69 
A3D C8N H82N SING N N 70 
A3D C8N H83N SING N N 71 
A3D C4N C5N  SING Y N 72 
A3D C4N H4N  SING N N 73 
A3D C5N C6N  DOUB Y N 74 
A3D C5N H5N  SING N N 75 
A3D C6N H6N  SING N N 76 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A3D InChI            InChI                1.03  
;InChI=1S/C22H28N6O14P2/c1-10(29)11-3-2-4-27(5-11)21-17(32)15(30)12(40-21)6-38-43(34,35)42-44(36,37)39-7-13-16(31)18(33)22(41-13)28-9-26-14-19(23)24-8-25-20(14)28/h2-5,8-9,12-13,15-18,21-22,30-33H,6-7H2,1H3,(H3-,23,24,25,34,35,36,37)/t12-,13-,15-,16-,17-,18-,21-,22-/m1/s1
;
A3D InChIKey         InChI                1.03  KPVQNXLUPNWQHM-RBEMOOQDSA-N 
A3D SMILES_CANONICAL CACTVS               3.385 "CC(=O)c1ccc[n+](c1)[C@@H]2O[C@H](CO[P]([O-])(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)[C@@H](O)[C@H]2O" 
A3D SMILES           CACTVS               3.385 "CC(=O)c1ccc[n+](c1)[CH]2O[CH](CO[P]([O-])(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)[CH](O)[CH]2O" 
A3D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC(=O)c1ccc[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)([O-])O[P@](=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O" 
A3D SMILES           "OpenEye OEToolkits" 1.7.5 "CC(=O)c1ccc[n+](c1)C2C(C(C(O2)COP(=O)([O-])OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] [(2R,3S,4R,5R)-5-(3-ethanoylpyridin-1-ium-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A3D "Create component"   2003-07-17 RCSB 
A3D "Modify descriptor"  2011-06-04 RCSB 
A3D "Modify descriptor"  2012-01-05 RCSB 
A3D "Modify coordinates" 2012-01-05 RCSB 
# 
