data_A4D
# 
_chem_comp.id                                    A4D 
_chem_comp.name                                  "5'-thioadenosine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H13 N5 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-08-19 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        283.307 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A4D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3IOB 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A4D N1   N1   N 0 1 Y N N -1.312 -8.538  42.334 -4.598 -0.434 0.653  N1   A4D 1  
A4D C2   C2   C 0 1 Y N N -1.475 -7.645  41.347 -3.720 -1.265 1.186  C2   A4D 2  
A4D N3   N3   N 0 1 Y N N -1.110 -7.921  40.093 -2.422 -1.122 1.023  N3   A4D 3  
A4D C4   C4   C 0 1 Y N N -0.572 -9.130  39.798 -1.937 -0.118 0.300  C4   A4D 4  
A4D C5   C5   C 0 1 Y N N -0.383 -10.087 40.805 -2.830 0.793  -0.290 C5   A4D 5  
A4D C6   C6   C 0 1 Y N N -0.778 -9.753  42.105 -4.206 0.599  -0.086 C6   A4D 6  
A4D N6   N6   N 0 1 N N N -0.610 -10.607 43.118 -5.133 1.463  -0.642 N6   A4D 7  
A4D N7   N7   N 0 1 Y N N 0.173  -11.180 40.252 -2.085 1.704  -0.961 N7   A4D 8  
A4D C8   C8   C 0 1 Y N N 0.321  -10.915 38.947 -0.823 1.418  -0.824 C8   A4D 9  
A4D N9   N9   N 0 1 Y N N -0.141 -9.679  38.674 -0.680 0.301  -0.055 N9   A4D 10 
A4D OAB  OAB  O 0 1 N N N 0.626  -7.284  35.256 3.125  -2.534 -0.401 OAB  A4D 11 
A4D OAC  OAC  O 0 1 N N N 2.108  -7.917  37.486 0.592  -2.717 -0.218 OAC  A4D 12 
A4D SAD  SAD  S 0 1 N N N 1.158  -10.900 32.882 4.455  1.976  0.766  SAD  A4D 13 
A4D CAG  CAG  C 0 1 N N N 0.413  -11.063 34.551 4.011  0.673  -0.415 CAG  A4D 14 
A4D OAK  OAK  O 0 1 N N N -0.698 -9.901  36.417 1.666  0.623  0.265  OAK  A4D 15 
A4D CAO  CAO  C 0 1 N N S 1.091  -8.650  35.392 2.504  -1.314 -0.811 CAO  A4D 16 
A4D CAP  CAP  C 0 1 N N R 1.355  -8.960  36.863 0.967  -1.425 -0.700 CAP  A4D 17 
A4D CAQ  CAQ  C 0 1 N N S -0.047 -9.665  35.115 2.869  -0.168 0.159  CAQ  A4D 18 
A4D CAR  CAR  C 0 1 N N R -0.108 -9.014  37.356 0.585  -0.333 0.324  CAR  A4D 19 
A4D H2   H2   H 0 1 N N N -1.911 -6.683  41.571 -4.082 -2.091 1.780  H2   A4D 20 
A4D HN6  HN6  H 0 1 N N N -0.931 -10.186 43.966 -6.081 1.319  -0.494 HN6  A4D 21 
A4D HN6A HN6A H 0 0 N N N -1.133 -11.441 42.941 -4.835 2.214  -1.179 HN6A A4D 22 
A4D H8   H8   H 0 1 N N N 0.747  -11.592 38.221 -0.009 1.981  -1.257 H8   A4D 23 
A4D HOAB HOAB H 0 0 N N N 0.463  -7.094  34.340 4.091  -2.520 -0.451 HOAB A4D 24 
A4D HOAC HOAC H 0 0 N N N 2.258  -8.135  38.398 0.862  -3.445 -0.794 HOAC A4D 25 
A4D HSAD HSAD H 0 0 N N N 1.464  -12.132 32.601 5.453  2.624  0.140  HSAD A4D 26 
A4D HAG  HAG  H 0 1 N N N -0.463 -11.725 34.486 3.692  1.126  -1.353 HAG  A4D 27 
A4D HAGA HAGA H 0 0 N N N 1.161  -11.492 35.233 4.877  0.035  -0.595 HAGA A4D 28 
A4D HAO  HAO  H 0 1 N N N 1.954  -8.733  34.715 2.796  -1.061 -1.830 HAO  A4D 29 
A4D HAP  HAP  H 0 1 N N N 1.950  -9.861  37.072 0.499  -1.227 -1.664 HAP  A4D 30 
A4D HAQ  HAQ  H 0 1 N N N -0.693 -9.232  34.337 3.147  -0.568 1.134  HAQ  A4D 31 
A4D HAR  HAR  H 0 1 N N N -0.590 -8.029  37.439 0.510  -0.759 1.325  HAR  A4D 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A4D N1  C2   DOUB Y N 1  
A4D N1  C6   SING Y N 2  
A4D C2  N3   SING Y N 3  
A4D N3  C4   DOUB Y N 4  
A4D C4  C5   SING Y N 5  
A4D C4  N9   SING Y N 6  
A4D C5  C6   DOUB Y N 7  
A4D C5  N7   SING Y N 8  
A4D C6  N6   SING N N 9  
A4D N7  C8   DOUB Y N 10 
A4D C8  N9   SING Y N 11 
A4D N9  CAR  SING N N 12 
A4D OAB CAO  SING N N 13 
A4D OAC CAP  SING N N 14 
A4D SAD CAG  SING N N 15 
A4D CAG CAQ  SING N N 16 
A4D OAK CAQ  SING N N 17 
A4D OAK CAR  SING N N 18 
A4D CAO CAP  SING N N 19 
A4D CAO CAQ  SING N N 20 
A4D CAP CAR  SING N N 21 
A4D C2  H2   SING N N 22 
A4D N6  HN6  SING N N 23 
A4D N6  HN6A SING N N 24 
A4D C8  H8   SING N N 25 
A4D OAB HOAB SING N N 26 
A4D OAC HOAC SING N N 27 
A4D SAD HSAD SING N N 28 
A4D CAG HAG  SING N N 29 
A4D CAG HAGA SING N N 30 
A4D CAO HAO  SING N N 31 
A4D CAP HAP  SING N N 32 
A4D CAQ HAQ  SING N N 33 
A4D CAR HAR  SING N N 34 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A4D SMILES           ACDLabs              11.02 "n2c1c(ncnc1n(c2)C3OC(C(O)C3O)CS)N"                                                                                                        
A4D SMILES_CANONICAL CACTVS               3.352 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CS)[C@@H](O)[C@H]3O"                                                                                        
A4D SMILES           CACTVS               3.352 "Nc1ncnc2n(cnc12)[CH]3O[CH](CS)[CH](O)[CH]3O"                                                                                              
A4D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CS)O)O)N"                                                                                  
A4D SMILES           "OpenEye OEToolkits" 1.7.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CS)O)O)N"                                                                                                    
A4D InChI            InChI                1.03  "InChI=1S/C10H13N5O3S/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(1-19)18-10/h2-4,6-7,10,16-17,19H,1H2,(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" 
A4D InChIKey         InChI                1.03  HLJHWWUZHBUUAC-KQYNXXCUSA-N                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A4D "SYSTEMATIC NAME" ACDLabs              11.02 "5'-thioadenosine"                                                       
A4D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R,3R,4S,5S)-2-(6-aminopurin-9-yl)-5-(sulfanylmethyl)oxolane-3,4-diol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A4D "Create component"     2009-08-19 RCSB 
A4D "Modify aromatic_flag" 2011-06-04 RCSB 
A4D "Modify descriptor"    2011-06-04 RCSB 
# 
