data_BVD
# 
_chem_comp.id                                    BVD 
_chem_comp.name                                  5-BROMOVINYLDEOXYURIDINE 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C11 H13 Br N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        333.135 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     BVD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1KI8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
BVD "O5'"  O5*  O  0 1 N N N 49.962 82.126 52.892 -1.405 2.285  5.403  "O5'"  BVD 1  
BVD "C5'"  C5*  C  0 1 N N N 50.804 83.282 52.944 -0.444 1.229  5.453  "C5'"  BVD 2  
BVD "C4'"  C4*  C  0 1 N N R 50.355 84.289 54.037 -0.872 0.105  4.507  "C4'"  BVD 3  
BVD "O4'"  O4*  O  0 1 N N N 48.989 84.747 53.847 -0.882 0.569  3.139  "O4'"  BVD 4  
BVD "C1'"  C1*  C  0 1 N N R 47.988 84.197 54.765 -0.784 -0.594 2.301  "C1'"  BVD 5  
BVD N1     N1   N  0 1 N N N 46.666 83.837 54.093 -0.016 -0.276 1.095  N1     BVD 6  
BVD C6     C6   C  0 1 N N N 46.621 82.883 53.108 -0.595 -0.445 -0.129 C6     BVD 7  
BVD C2     C2   C  0 1 N N N 45.536 84.512 54.435 1.240  0.180  1.218  C2     BVD 8  
BVD O2     O2   O  0 1 N N N 45.440 85.299 55.369 1.714  0.315  2.329  O2     BVD 9  
BVD N3     N3   N  0 1 N N N 44.476 84.249 53.705 1.993  0.484  0.146  N3     BVD 10 
BVD C4     C4   C  0 1 N N N 44.354 83.251 52.783 1.493  0.344  -1.099 C4     BVD 11 
BVD O4     O4   O  0 1 N N N 43.232 82.946 52.405 2.168  0.622  -2.074 O4     BVD 12 
BVD C5     C5   C  0 1 N N N 45.554 82.611 52.377 0.117  -0.149 -1.256 C5     BVD 13 
BVD C5A    C5A  C  0 1 N N N 45.636 81.606 51.428 -0.478 -0.319 -2.596 C5A    BVD 14 
BVD C5B    C5B  C  0 1 N N N 44.730 81.495 50.423 0.187  0.077  -3.674 C5B    BVD 15 
BVD BR     BR   BR 0 0 N N N 44.917 80.189 49.010 -0.631 -0.008 -5.376 BR     BVD 16 
BVD "C2'"  C2*  C  0 1 N N N 48.811 83.124 55.451 -0.060 -1.685 3.114  "C2'"  BVD 17 
BVD "C3'"  C3*  C  0 1 N N S 50.266 83.694 55.440 0.180  -1.031 4.499  "C3'"  BVD 18 
BVD "O3'"  O3*  O  0 1 N N N 50.296 84.820 56.276 -0.061 -1.966 5.553  "O3'"  BVD 19 
BVD "HO5'" *HO5 H  0 0 N N N 50.236 81.509 52.223 -1.098 2.971  6.012  "HO5'" BVD 20 
BVD "H5'1" 1H5* H  0 0 N N N 51.873 82.995 53.075 0.530  1.609  5.148  "H5'1" BVD 21 
BVD "H5'2" 2H5* H  0 0 N N N 50.873 83.775 51.946 -0.381 0.843  6.471  "H5'2" BVD 22 
BVD "H4'"  H4*  H  0 1 N N N 51.132 85.082 53.944 -1.851 -0.280 4.789  "H4'"  BVD 23 
BVD "H1'"  H1*  H  0 1 N N N 47.547 84.892 55.517 -1.781 -0.938 2.026  "H1'"  BVD 24 
BVD H6     H6   H  0 1 N N N 47.519 82.283 52.884 -1.608 -0.810 -0.207 H6     BVD 25 
BVD HN3    HN3  H  0 1 N N N 43.683 84.870 53.867 2.899  0.808  0.269  HN3    BVD 26 
BVD H5A    H5A  H  0 1 N N N 46.453 80.866 51.474 -1.455 -0.767 -2.700 H5A    BVD 27 
BVD H5B    H5B  H  0 1 N N N 44.008 82.284 50.692 1.197  0.449  -3.578 H5B    BVD 28 
BVD "H2'1" 1H2* H  0 0 N N N 48.438 82.838 56.462 -0.692 -2.567 3.217  "H2'1" BVD 29 
BVD "H2'2" 2H2* H  0 0 N N N 48.712 82.111 54.995 0.887  -1.946 2.644  "H2'2" BVD 30 
BVD "H3'"  H3*  H  0 1 N N N 51.038 82.942 55.726 1.189  -0.624 4.566  "H3'"  BVD 31 
BVD "HO3'" *HO3 H  0 0 N N N 50.240 84.449 57.149 0.568  -2.690 5.434  "HO3'" BVD 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
BVD "O5'" "C5'"  SING N N 1  
BVD "O5'" "HO5'" SING N N 2  
BVD "C5'" "C4'"  SING N N 3  
BVD "C5'" "H5'1" SING N N 4  
BVD "C5'" "H5'2" SING N N 5  
BVD "C4'" "O4'"  SING N N 6  
BVD "C4'" "C3'"  SING N N 7  
BVD "C4'" "H4'"  SING N N 8  
BVD "O4'" "C1'"  SING N N 9  
BVD "C1'" N1     SING N N 10 
BVD "C1'" "C2'"  SING N N 11 
BVD "C1'" "H1'"  SING N N 12 
BVD N1    C6     SING N N 13 
BVD N1    C2     SING N N 14 
BVD C6    C5     DOUB N N 15 
BVD C6    H6     SING N N 16 
BVD C2    O2     DOUB N N 17 
BVD C2    N3     SING N N 18 
BVD N3    C4     SING N N 19 
BVD N3    HN3    SING N N 20 
BVD C4    O4     DOUB N N 21 
BVD C4    C5     SING N N 22 
BVD C5    C5A    SING N N 23 
BVD C5A   C5B    DOUB N E 24 
BVD C5A   H5A    SING N N 25 
BVD C5B   BR     SING N N 26 
BVD C5B   H5B    SING N N 27 
BVD "C2'" "C3'"  SING N N 28 
BVD "C2'" "H2'1" SING N N 29 
BVD "C2'" "H2'2" SING N N 30 
BVD "C3'" "O3'"  SING N N 31 
BVD "C3'" "H3'"  SING N N 32 
BVD "O3'" "HO3'" SING N N 33 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
BVD SMILES           ACDLabs              10.04 "Br[C@H]=CC=1C(=O)NC(=O)N(C=1)C2OC(C(O)C2)CO"                                                                                           
BVD SMILES_CANONICAL CACTVS               3.341 "OC[C@H]1O[C@H](C[C@@H]1O)N2C=C(\C=C\Br)C(=O)NC2=O"                                                                                     
BVD SMILES           CACTVS               3.341 "OC[CH]1O[CH](C[CH]1O)N2C=C(C=CBr)C(=O)NC2=O"                                                                                           
BVD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)\C=C\Br)CO)O"                                                                                   
BVD SMILES           "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1N2C=C(C(=O)NC2=O)C=CBr)CO)O"                                                                                                  
BVD InChI            InChI                1.03  "InChI=1S/C11H13BrN2O5/c12-2-1-6-4-14(11(18)13-10(6)17)9-3-7(16)8(5-15)19-9/h1-2,4,7-9,15-16H,3,5H2,(H,13,17,18)/b2-1+/t7-,8+,9+/m0/s1" 
BVD InChIKey         InChI                1.03  ODZBBRURCPAEIQ-PIXDULNESA-N                                                                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
BVD "SYSTEMATIC NAME" ACDLabs              10.04 "5-[(E)-2-bromoethenyl]-2'-deoxyuridine"                                                           
BVD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "5-[(E)-2-bromoethenyl]-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
BVD "Create component"  1999-07-08 RCSB 
BVD "Modify descriptor" 2011-06-04 RCSB 
# 
