data_DND
#

_chem_comp.id                                   DND
_chem_comp.name                                 "NICOTINIC ACID ADENINE DINUCLEOTIDE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H27 N6 O15 P2"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        DEAMIDO-NAD+
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2001-04-16
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       665.418
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    DND
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1KQO
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DND  PN   PN   P  0  1  N  N  N   9.531  43.089  14.197   1.491  -2.779  -1.073  PN   DND   1  
DND  O11  O11  O  0  1  N  N  N   9.848  44.197  13.283   1.036  -3.219  -2.411  O11  DND   2  
DND  O12  O12  O  0  1  N  N  N  10.771  42.522  14.827   2.394  -3.934  -0.407  O12  DND   3  
DND  O3P  O3P  O  0  1  N  N  N   8.645  41.888  13.598   0.211  -2.493  -0.139  O3P  DND   4  
DND  O5D  O5D  O  0  1  N  N  N   8.398  43.518  15.198   2.362  -1.433  -1.217  O5D  DND   5  
DND  C5D  C5D  C  0  1  N  N  N   8.575  44.670  16.012   3.505  -1.333  -2.068  C5D  DND   6  
DND  C4D  C4D  C  0  1  N  N  R   7.318  44.733  16.804   4.094   0.075  -1.969  C4D  DND   7  
DND  O4D  O4D  O  0  1  N  N  N   7.684  45.319  18.056   4.624   0.292  -0.650  O4D  DND   8  
DND  C3D  C3D  C  0  1  N  N  S   6.214  45.626  16.207   5.262   0.226  -2.962  C3D  DND   9  
DND  O3D  O3D  O  0  1  N  N  N   4.884  45.130  16.586   4.991   1.272  -3.898  O3D  DND  10  
DND  C2D  C2D  C  0  1  N  N  R   6.497  46.953  16.876   6.473   0.598  -2.071  C2D  DND  11  
DND  O2D  O2D  O  0  1  N  N  N   5.330  47.810  16.880   7.270   1.609  -2.690  O2D  DND  12  
DND  C1D  C1D  C  0  1  N  N  R   6.921  46.484  18.272   5.782   1.142  -0.795  C1D  DND  13  
DND  N1N  N1N  N  1  1  Y  N  N   7.677  47.529  18.973   6.666   1.012   0.366  N1N  DND  14  
DND  C6N  C6N  C  0  1  Y  N  N   9.016  47.909  18.640   6.840  -0.177   0.908  C6N  DND  15  
DND  C5N  C5N  C  0  1  Y  N  N   9.689  48.889  19.277   7.666  -0.348   2.005  C5N  DND  16  
DND  C4N  C4N  C  0  1  Y  N  N   9.036  49.678  20.415   8.318   0.749   2.539  C4N  DND  17  
DND  C3N  C3N  C  0  1  Y  N  N   7.641  49.275  20.759   8.113   1.999   1.941  C3N  DND  18  
DND  C2N  C2N  C  0  1  Y  N  N   7.026  48.204  20.013   7.268   2.086   0.834  C2N  DND  19  
DND  C7N  C7N  C  0  1  N  N  N   6.788  49.878  21.808   8.784   3.204   2.471  C7N  DND  20  
DND  O7N  O7N  O  0  1  N  N  N   5.533  49.483  22.097   8.599   4.283   1.944  O7N  DND  21  
DND  O8N  O8N  O  0  1  N  N  N   7.329  50.790  22.403   9.600   3.106   3.538  O8N  DND  22  
DND  PA   PA   P  0  1  N  N  N   9.061  40.513  12.883  -1.164  -3.279   0.146  PA   DND  23  
DND  O13  O13  O  0  1  N  N  N   8.038  40.320  11.838  -1.680  -3.846  -1.121  O13  DND  24  
DND  O14  O14  O  0  1  N  N  N  10.471  40.510  12.352  -0.895  -4.470   1.196  O14  DND  25  
DND  O5B  O5B  O  0  1  N  N  N   8.891  39.305  13.940  -2.249  -2.259   0.758  O5B  DND  26  
DND  C5B  C5B  C  0  1  N  N  N   7.576  39.005  14.542  -3.604  -2.630   1.020  C5B  DND  27  
DND  C4B  C4B  C  0  1  N  N  R   7.875  38.153  15.786  -4.359  -1.429   1.596  C4B  DND  28  
DND  O4B  O4B  O  0  1  N  N  N   8.748  37.021  15.472  -4.540  -0.416   0.583  O4B  DND  29  
DND  C3B  C3B  C  0  1  N  N  S   8.591  38.909  16.912  -5.791  -1.840   2.004  C3B  DND  30  
DND  O3B  O3B  O  0  1  N  N  N   7.867  38.790  18.163  -5.858  -2.095   3.408  O3B  DND  31  
DND  C2B  C2B  C  0  1  N  N  R   9.975  38.255  16.846  -6.653  -0.611   1.636  C2B  DND  32  
DND  O2B  O2B  O  0  1  N  N  N  10.700  38.368  18.082  -7.278  -0.071   2.802  O2B  DND  33  
DND  C1B  C1B  C  0  1  N  N  R   9.622  36.802  16.468  -5.639   0.396   1.049  C1B  DND  34  
DND  N9A  N9A  N  0  1  Y  N  N  10.748  36.079  15.888  -6.239   1.131  -0.067  N9A  DND  35  
DND  C4A  C4A  C  0  1  Y  N  N  11.193  34.853  16.273  -6.963   2.293   0.022  C4A  DND  36  
DND  N3A  N3A  N  0  1  Y  N  N  10.690  34.069  17.252  -7.343   3.088   1.017  N3A  DND  37  
DND  C2A  C2A  C  0  1  Y  N  N  11.351  32.929  17.374  -8.055   4.169   0.777  C2A  DND  38  
DND  N1A  N1A  N  0  1  Y  N  N  12.433  32.502  16.636  -8.424   4.519  -0.441  N1A  DND  39  
DND  C6A  C6A  C  0  1  Y  N  N  12.928  33.326  15.642  -8.090   3.787  -1.499  C6A  DND  40  
DND  C5A  C5A  C  0  1  Y  N  N  12.276  34.579  15.444  -7.330   2.623  -1.294  C5A  DND  41  
DND  N7A  N7A  N  0  1  Y  N  N  12.525  35.601  14.552  -6.822   1.662  -2.103  N7A  DND  42  
DND  C8A  C8A  C  0  1  Y  N  N  11.565  36.485  14.865  -6.176   0.789  -1.385  C8A  DND  43  
DND  N6A  N6A  N  0  1  N  N  N  13.982  32.905  14.923  -8.483   4.161  -2.772  N6A  DND  44  
DND  H1   H1   H  0  1  N  N  N  11.532  42.994  14.510   2.727  -3.713   0.474  H1   DND  45  
DND  H2   H2   H  0  1  N  N  N   9.449  44.556  16.670   4.254  -2.063  -1.758  H2   DND  46  
DND  H3   H3   H  0  1  N  N  N   8.696  45.572  15.395   3.210  -1.532  -3.099  H3   DND  47  
DND  H4   H4   H  0  1  N  N  N   6.919  43.719  16.952   3.323   0.815  -2.184  H4   DND  48  
DND  H5   H5   H  0  1  N  N  N   6.324  45.702  15.115   5.444  -0.714  -3.484  H5   DND  49  
DND  H6   H6   H  0  1  N  N  N   4.217  45.692  16.210   5.694   1.410  -4.548  H6   DND  50  
DND  H7   H7   H  0  1  N  N  N   7.344  47.449  16.380   7.073  -0.283  -1.844  H7   DND  51  
DND  H8   H8   H  0  1  N  N  N   5.542  48.632  17.306   7.651   1.345  -3.539  H8   DND  52  
DND  H9   H9   H  0  1  N  N  N   6.016  46.242  18.848   5.480   2.180  -0.935  H9   DND  53  
DND  H10  H10  H  0  1  N  N  N   9.513  47.384  17.838   6.330  -1.032   0.489  H10  DND  54  
DND  H11  H11  H  0  1  N  N  N  10.701  49.120  18.981   7.800  -1.327   2.440  H11  DND  55  
DND  H12  H12  H  0  1  N  N  N   9.551  50.473  20.934   8.968   0.645   3.396  H12  DND  56  
DND  H13  H13  H  0  1  N  N  N   6.019  47.910  20.268   7.103   3.042   0.360  H13  DND  57  
DND  H14  H14  H  0  1  N  N  N   6.735  51.138  23.058  10.016   3.922   3.848  H14  DND  58  
DND  H15  H15  H  0  1  N  N  N  10.455  40.381  11.411  -0.555  -4.171   2.050  H15  DND  59  
DND  H16  H16  H  0  1  N  N  N   7.064  39.935  14.828  -4.081  -2.947   0.093  H16  DND  60  
DND  H17  H17  H  0  1  N  N  N   6.949  38.444  13.834  -3.624  -3.450   1.738  H17  DND  61  
DND  H18  H18  H  0  1  N  N  N   6.920  37.774  16.179  -3.822  -1.020   2.452  H18  DND  62  
DND  H19  H19  H  0  1  N  N  N   8.683  39.968  16.629  -6.112  -2.717   1.442  H19  DND  63  
DND  H20  H20  H  0  1  N  N  N   8.329  39.265  18.843  -6.735  -2.357   3.720  H20  DND  64  
DND  H21  H21  H  0  1  N  N  N  10.548  38.709  16.024  -7.402  -0.880   0.891  H21  DND  65  
DND  H22  H22  H  0  1  N  N  N  10.886  39.283  18.258  -7.880  -0.684   3.245  H22  DND  66  
DND  H23  H23  H  0  1  N  N  N   9.192  36.270  17.330  -5.300   1.087   1.821  H23  DND  67  
DND  H24  H24  H  0  1  N  N  N  11.001  32.255  18.142  -8.347   4.793   1.609  H24  DND  68  
DND  H25  H25  H  0  1  N  N  N  11.447  37.431  14.357  -5.671  -0.082  -1.776  H25  DND  69  
DND  H26  H26  H  0  1  N  N  N  14.263  31.999  15.241  -9.007   4.967  -2.900  H26  DND  70  
DND  H27  H27  H  0  1  N  N  N  13.728  32.855  13.957  -8.233   3.618  -3.536  H27  DND  71  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DND  O13  PA   DOUB  N  N   1  
DND  O14  PA   SING  N  N   2  
DND  PA   O3P  SING  N  N   3  
DND  PA   O5B  SING  N  N   4  
DND  O11  PN   DOUB  N  N   5  
DND  O3P  PN   SING  N  N   6  
DND  O5B  C5B  SING  N  N   7  
DND  PN   O12  SING  N  N   8  
DND  PN   O5D  SING  N  N   9  
DND  C5B  C4B  SING  N  N  10  
DND  N7A  C8A  DOUB  Y  N  11  
DND  N7A  C5A  SING  Y  N  12  
DND  C8A  N9A  SING  Y  N  13  
DND  N6A  C6A  SING  N  N  14  
DND  O5D  C5D  SING  N  N  15  
DND  C5A  C6A  SING  Y  N  16  
DND  C5A  C4A  DOUB  Y  N  17  
DND  O4B  C4B  SING  N  N  18  
DND  O4B  C1B  SING  N  N  19  
DND  C6A  N1A  DOUB  Y  N  20  
DND  C4B  C3B  SING  N  N  21  
DND  N9A  C4A  SING  Y  N  22  
DND  N9A  C1B  SING  N  N  23  
DND  C5D  C4D  SING  N  N  24  
DND  C3D  O3D  SING  N  N  25  
DND  C3D  C4D  SING  N  N  26  
DND  C3D  C2D  SING  N  N  27  
DND  C4A  N3A  SING  Y  N  28  
DND  C1B  C2B  SING  N  N  29  
DND  N1A  C2A  SING  Y  N  30  
DND  C4D  O4D  SING  N  N  31  
DND  C2B  C3B  SING  N  N  32  
DND  C2B  O2B  SING  N  N  33  
DND  C2D  O2D  SING  N  N  34  
DND  C2D  C1D  SING  N  N  35  
DND  C3B  O3B  SING  N  N  36  
DND  N3A  C2A  DOUB  Y  N  37  
DND  O4D  C1D  SING  N  N  38  
DND  C1D  N1N  SING  N  N  39  
DND  C6N  N1N  DOUB  Y  N  40  
DND  C6N  C5N  SING  Y  N  41  
DND  N1N  C2N  SING  Y  N  42  
DND  C5N  C4N  DOUB  Y  N  43  
DND  C2N  C3N  DOUB  Y  N  44  
DND  C4N  C3N  SING  Y  N  45  
DND  C3N  C7N  SING  N  N  46  
DND  C7N  O7N  DOUB  N  N  47  
DND  C7N  O8N  SING  N  N  48  
DND  O12  H1   SING  N  N  49  
DND  C5D  H2   SING  N  N  50  
DND  C5D  H3   SING  N  N  51  
DND  C4D  H4   SING  N  N  52  
DND  C3D  H5   SING  N  N  53  
DND  O3D  H6   SING  N  N  54  
DND  C2D  H7   SING  N  N  55  
DND  O2D  H8   SING  N  N  56  
DND  C1D  H9   SING  N  N  57  
DND  C6N  H10  SING  N  N  58  
DND  C5N  H11  SING  N  N  59  
DND  C4N  H12  SING  N  N  60  
DND  C2N  H13  SING  N  N  61  
DND  O8N  H14  SING  N  N  62  
DND  O14  H15  SING  N  N  63  
DND  C5B  H16  SING  N  N  64  
DND  C5B  H17  SING  N  N  65  
DND  C4B  H18  SING  N  N  66  
DND  C3B  H19  SING  N  N  67  
DND  O3B  H20  SING  N  N  68  
DND  C2B  H21  SING  N  N  69  
DND  O2B  H22  SING  N  N  70  
DND  C1B  H23  SING  N  N  71  
DND  C2A  H24  SING  N  N  72  
DND  C8A  H25  SING  N  N  73  
DND  N6A  H26  SING  N  N  74  
DND  N6A  H27  SING  N  N  75  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DND  InChI             InChI                 1.03   "InChI=1S/C21H26N6O15P2/c22-17-12-18(24-7-23-17)27(8-25-12)20-16(31)14(29)11(41-20)6-39-44(36,37)42-43(34,35)38-5-10-13(28)15(30)19(40-10)26-3-1-2-9(4-26)21(32)33/h1-4,7-8,10-11,13-16,19-20,28-31H,5-6H2,(H4-,22,23,24,32,33,34,35,36,37)/p+1/t10-,11-,13-,14-,15-,16-,19-,20-/m1/s1"  
DND  InChIKey          InChI                 1.03   SENPVEZBRZQVST-HISDBWNOSA-O  
DND  SMILES_CANONICAL  CACTVS                3.385  "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)[n+]5cccc(c5)C(O)=O)[C@@H](O)[C@H]3O"  
DND  SMILES            CACTVS                3.385  "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)[n+]5cccc(c5)C(O)=O)[CH](O)[CH]3O"  
DND  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)O"  
DND  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cc(c[n+](c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)O)O)C(=O)O"  
#
_pdbx_chem_comp_identifier.comp_id          DND
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.7.6
_pdbx_chem_comp_identifier.identifier       "1-[(2R,3R,4S,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxymethyl]-3,4-bis(oxidanyl)oxolan-2-yl]pyridin-1-ium-3-carboxylic acid"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DND  "Create component"    2001-04-16  RCSB  
DND  "Modify descriptor"   2011-06-04  RCSB  
DND  "Other modification"  2014-10-13  RCSB  
DND  "Modify synonyms"     2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DND
_pdbx_chem_comp_synonyms.name        DEAMIDO-NAD+
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
