data_GTD
#

_chem_comp.id                                   GTD
_chem_comp.name                                 "1-(S-GLUTATHIONYL)-2,4,6-TRINITROCYCLOHEXA-2,5-DIENE"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C16 H20 N6 O12 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-1-OXO-3-(2,4,6-TRINITROCYCLOHEXA-2,5-DIENYLTHIO)PROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-07-08
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       520.428
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GTD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4GST
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GTD  N1      N1      N   0  1  N  N  N  18.031  14.866  13.566  -5.812   2.722   1.865  N1      GTD   1  
GTD  CA1     CA1     C   0  1  N  N  S  18.526  14.371  12.210  -5.495   3.029   0.464  CA1     GTD   2  
GTD  C1      C1      C   0  1  N  N  N  17.550  13.310  11.736  -6.761   3.381  -0.273  C1      GTD   3  
GTD  O11     O11     O   0  1  N  N  N  17.405  13.021  10.554  -7.832   3.041   0.170  O11     GTD   4  
GTD  O12     O12     O   0  1  N  N  N  16.787  12.695  12.668  -6.699   4.071  -1.423  O12     GTD   5  
GTD  CB1     CB1     C   0  1  N  N  N  19.978  13.832  12.363  -4.846   1.807  -0.191  CB1     GTD   6  
GTD  CG1     CG1     C   0  1  N  N  N  20.579  13.585  10.985  -3.499   1.525   0.477  CG1     GTD   7  
GTD  CD1     CD1     C   0  1  N  N  N  22.081  13.401  11.015  -2.860   0.322  -0.168  CD1     GTD   8  
GTD  OE1     OE1     O   0  1  N  N  N  22.832  13.855  11.944  -3.427  -0.253  -1.073  OE1     GTD   9  
GTD  N2      N2      N   0  1  N  N  N  22.575  12.736   9.980  -1.659  -0.114   0.261  N2      GTD  10  
GTD  CA2     CA2     C   0  1  N  N  R  23.918  12.125   9.949  -1.039  -1.284  -0.365  CA2     GTD  11  
GTD  C2      C2      C   0  1  N  N  N  24.584  12.618   8.657  -1.565  -2.539   0.282  C2      GTD  12  
GTD  O2      O2      O   0  1  N  N  N  25.579  12.029   8.223  -2.378  -2.464   1.178  O2      GTD  13  
GTD  CB2     CB2     C   0  1  N  N  N  23.832  10.615   9.954   0.479  -1.214  -0.184  CB2     GTD  14  
GTD  SG2     SG2     S   0  1  N  N  N  22.933   9.924  11.308   1.112   0.297  -0.963  SG2     GTD  15  
GTD  N3      N3      N   0  1  N  N  N  24.039  13.710   8.072  -1.131  -3.745  -0.136  N3      GTD  16  
GTD  CA3     CA3     C   0  1  N  N  N  24.614  14.204   6.825  -1.642  -4.965   0.493  CA3     GTD  17  
GTD  C3      C3      C   0  1  N  N  N  25.286  15.561   6.981  -1.004  -6.168  -0.152  C3      GTD  18  
GTD  O31     O31     O   0  1  N  N  N  25.536  16.016   8.093  -0.203  -6.021  -1.045  O31     GTD  19  
GTD  O32     O32     O   0  1  N  N  N  25.633  16.217   5.872  -1.324  -7.403   0.266  O32     GTD  20  
GTD  "C1'"   "C1'"   C   0  1  N  N  N  24.208   9.573  12.493   2.881   0.120  -0.603  "C1'"   GTD  21  
GTD  "C2'"   "C2'"   C   0  1  N  N  N  24.371   8.076  12.459   3.086   0.150   0.882  "C2'"   GTD  22  
GTD  "N2'"   "N2'"   N   1  1  N  N  N  25.221   7.418  11.487   2.804  -1.077   1.661  "N2'"   GTD  23  
GTD  O21     O21     O   0  1  N  N  N  25.243   7.885  10.336   2.414  -2.082   1.093  O21     GTD  24  
GTD  O22     O22     O  -1  1  N  N  N  25.794   6.369  11.870   2.961  -1.082   2.868  O22     GTD  25  
GTD  "C3'"   "C3'"   C   0  1  N  N  N  23.716   7.198  13.282   3.499   1.205   1.515  "C3'"   GTD  26  
GTD  "C4'"   "C4'"   C   0  1  N  N  N  23.042   7.718  14.377   3.813   2.497   0.822  "C4'"   GTD  27  
GTD  "N4'"   "N4'"   N   1  1  N  N  N  22.235   6.793  15.177   5.016   3.083   1.420  "N4'"   GTD  28  
GTD  O41     O41     O   0  1  N  N  N  22.403   5.557  15.053   6.074   2.482   1.371  O41     GTD  29  
GTD  O42     O42     O  -1  1  N  N  N  21.405   7.181  16.018   4.956   4.170   1.967  O42     GTD  30  
GTD  "C5'"   "C5'"   C   0  1  N  N  N  22.997   9.073  14.675   4.047   2.284  -0.643  "C5'"   GTD  31  
GTD  "C6'"   "C6'"   C   0  1  N  N  N  23.622   9.963  13.824   3.633   1.228  -1.276  "C6'"   GTD  32  
GTD  "N6'"   "N6'"   N   1  1  N  N  N  23.910  11.325  14.136   3.917   1.114  -2.724  "N6'"   GTD  33  
GTD  O61     O61     O   0  1  N  N  N  23.044  11.931  14.785   3.541   0.135  -3.343  O61     GTD  34  
GTD  O62     O62     O  -1  1  N  N  N  24.954  11.857  13.785   4.526   2.000  -3.297  O62     GTD  35  
GTD  HN11    1HN1    H   0  0  N  N  N  18.687  15.579  13.884  -6.328   3.512   2.224  HN11    GTD  36  
GTD  HN12    2HN1    H   0  0  N  N  N  17.899  14.113  14.242  -6.450   1.940   1.853  HN12    GTD  37  
GTD  HA1     HA1     H   0  1  N  N  N  18.565  15.184  11.448  -4.805   3.872   0.423  HA1     GTD  38  
GTD  HO1     HO1     H   0  1  N  N  N  16.176  12.030  12.371  -7.512   4.297  -1.895  HO1     GTD  39  
GTD  HB11    1HB1    H   0  0  N  N  N  20.613  14.505  12.984  -5.499   0.942  -0.072  HB11    GTD  40  
GTD  HB12    2HB1    H   0  0  N  N  N  20.024  12.925  13.010  -4.691   2.003  -1.252  HB12    GTD  41  
GTD  HG11    1HG1    H   0  0  N  N  N  20.083  12.720  10.484  -2.846   2.391   0.359  HG11    GTD  42  
GTD  HG12    2HG1    H   0  0  N  N  N  20.292  14.396  10.275  -3.654   1.330   1.538  HG12    GTD  43  
GTD  HN2     HN2     H   0  1  N  N  N  21.916  12.694   9.201  -1.206   0.346   0.985  HN2     GTD  44  
GTD  HA2     HA2     H   0  1  N  N  N  24.506  12.415  10.850  -1.277  -1.296  -1.429  HA2     GTD  45  
GTD  HB21    1HB2    H   0  0  N  N  N  23.413  10.249   8.987   0.718  -1.202   0.879  HB21    GTD  46  
GTD  HB22    2HB2    H   0  0  N  N  N  24.853  10.170   9.903   0.941  -2.084  -0.651  HB22    GTD  47  
GTD  HN3     HN3     H   0  1  N  N  N  23.241  14.136   8.543  -0.480  -3.805  -0.853  HN3     GTD  48  
GTD  HA31    1HA3    H   0  0  N  N  N  25.317  13.458   6.387  -1.404  -4.953   1.556  HA31    GTD  49  
GTD  HA32    2HA3    H   0  0  N  N  N  23.848  14.228   6.014  -2.724  -5.015   0.364  HA32    GTD  50  
GTD  HO3     HO3     H   0  1  N  N  N  26.052  17.063   5.969  -0.914  -8.175  -0.148  HO3     GTD  51  
GTD  "H1'"   "H1'"   H   0  1  N  N  N  25.176  10.093  12.305   3.231  -0.837  -0.991  "H1'"   GTD  52  
GTD  "H3'"   "H3'"   H   0  1  N  N  N  23.730   6.115  13.071   3.623   1.149   2.586  "H3'"   GTD  53  
GTD  "H4'"   "H4'"   H   0  1  N  N  N  24.066   8.035  14.680   2.978   3.185   0.954  "H4'"   GTD  54  
GTD  "H5'"   "H5'"   H   0  1  N  N  N  22.472   9.437  15.574   4.583   3.041  -1.196  "H5'"   GTD  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GTD  N1     CA1     SING  N  N   1  
GTD  N1     HN11    SING  N  N   2  
GTD  N1     HN12    SING  N  N   3  
GTD  CA1    C1      SING  N  N   4  
GTD  CA1    CB1     SING  N  N   5  
GTD  CA1    HA1     SING  N  N   6  
GTD  C1     O11     DOUB  N  N   7  
GTD  C1     O12     SING  N  N   8  
GTD  O12    HO1     SING  N  N   9  
GTD  CB1    CG1     SING  N  N  10  
GTD  CB1    HB11    SING  N  N  11  
GTD  CB1    HB12    SING  N  N  12  
GTD  CG1    CD1     SING  N  N  13  
GTD  CG1    HG11    SING  N  N  14  
GTD  CG1    HG12    SING  N  N  15  
GTD  CD1    OE1     DOUB  N  N  16  
GTD  CD1    N2      SING  N  N  17  
GTD  N2     CA2     SING  N  N  18  
GTD  N2     HN2     SING  N  N  19  
GTD  CA2    C2      SING  N  N  20  
GTD  CA2    CB2     SING  N  N  21  
GTD  CA2    HA2     SING  N  N  22  
GTD  C2     O2      DOUB  N  N  23  
GTD  C2     N3      SING  N  N  24  
GTD  CB2    SG2     SING  N  N  25  
GTD  CB2    HB21    SING  N  N  26  
GTD  CB2    HB22    SING  N  N  27  
GTD  SG2    "C1'"   SING  N  N  28  
GTD  N3     CA3     SING  N  N  29  
GTD  N3     HN3     SING  N  N  30  
GTD  CA3    C3      SING  N  N  31  
GTD  CA3    HA31    SING  N  N  32  
GTD  CA3    HA32    SING  N  N  33  
GTD  C3     O31     DOUB  N  N  34  
GTD  C3     O32     SING  N  N  35  
GTD  O32    HO3     SING  N  N  36  
GTD  "C1'"  "C2'"   SING  N  N  37  
GTD  "C1'"  "C6'"   SING  N  N  38  
GTD  "C1'"  "H1'"   SING  N  N  39  
GTD  "C2'"  "N2'"   SING  N  N  40  
GTD  "C2'"  "C3'"   DOUB  N  N  41  
GTD  "N2'"  O21     DOUB  N  N  42  
GTD  "N2'"  O22     SING  N  N  43  
GTD  "C3'"  "C4'"   SING  N  N  44  
GTD  "C3'"  "H3'"   SING  N  N  45  
GTD  "C4'"  "N4'"   SING  N  N  46  
GTD  "C4'"  "C5'"   SING  N  N  47  
GTD  "C4'"  "H4'"   SING  N  N  48  
GTD  "N4'"  O41     DOUB  N  N  49  
GTD  "N4'"  O42     SING  N  N  50  
GTD  "C5'"  "C6'"   DOUB  N  N  51  
GTD  "C5'"  "H5'"   SING  N  N  52  
GTD  "C6'"  "N6'"   SING  N  N  53  
GTD  "N6'"  O61     DOUB  N  N  54  
GTD  "N6'"  O62     SING  N  N  55  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GTD  SMILES            ACDLabs               10.04  "O=[N+]([O-])C1=CC([N+]([O-])=O)C=C([N+]([O-])=O)C1SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N"  
GTD  SMILES_CANONICAL  CACTVS                3.341  "N[C@@H](CCC(=O)N[C@@H](CS[C@@H]1C(=C[C@@H](C=C1[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O"  
GTD  SMILES            CACTVS                3.341  "N[CH](CCC(=O)N[CH](CS[CH]1C(=C[CH](C=C1[N+]([O-])=O)[N+]([O-])=O)[N+]([O-])=O)C(=O)NCC(O)=O)C(O)=O"  
GTD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C1=C(C(C(=CC1[N+](=O)[O-])[N+](=O)[O-])SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N)[N+](=O)[O-]"  
GTD  SMILES            "OpenEye OEToolkits"  1.5.0  "C1=C(C(C(=CC1[N+](=O)[O-])[N+](=O)[O-])SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)[N+](=O)[O-]"  
GTD  InChI             InChI                 1.03   "InChI=1S/C16H20N6O12S/c17-8(16(27)28)1-2-12(23)19-9(15(26)18-5-13(24)25)6-35-14-10(21(31)32)3-7(20(29)30)4-11(14)22(33)34/h3-4,7-9,14H,1-2,5-6,17H2,(H,18,26)(H,19,23)(H,24,25)(H,27,28)/t7-,8-,9-,14+/m0/s1"  
GTD  InChIKey          InChI                 1.03   VQUXYLXGOSJDJJ-OSGJSWLFSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GTD  "SYSTEMATIC NAME"  ACDLabs               10.04  "L-gamma-glutamyl-S-(cis-2,4,6-trinitrocyclohexa-2,5-dien-1-yl)-L-cysteinylglycine"  
GTD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S)-2-amino-5-[[(2R)-1-(carboxymethylamino)-1-oxo-3-[(2,4,6-trinitro-1-cyclohexa-2,5-dienyl)sulfanyl]propan-2-yl]amino]-5-oxo-pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GTD  "Create component"   1999-07-08  RCSB  
GTD  "Modify descriptor"  2011-06-04  RCSB  
GTD  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GTD
_pdbx_chem_comp_synonyms.name        "(S)-2-AMINO-5-((R)-1-(CARBOXYMETHYLAMINO)-1-OXO-3-(2,4,6-TRINITROCYCLOHEXA-2,5-DIENYLTHIO)PROPAN-2-YLAMINO)-5-OXOPENTANOIC ACID"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
