data_K5D
#

_chem_comp.id                                   K5D
_chem_comp.name                                 "2-(3-bromophenoxy)-N-[(1S,2S,3R,5S)-2-hydroxybicyclo[3.1.0]hexan-3-yl]acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H16 Br N O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2018-10-30
_chem_comp.pdbx_modified_date                   2019-03-29
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       326.186
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    K5D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6MWH
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K5D  C10  C1   C   0  1  Y  N  N  15.200  20.311  -40.228  -2.942  -2.398  -0.364  C10  K5D   1  
K5D  C17  C2   C   0  1  N  N  S  22.312  14.703  -34.266   6.391   1.268  -0.719  C17  K5D   2  
K5D  C02  C3   C   0  1  N  N  S  20.921  16.364  -33.253   5.543  -0.377   0.917  C02  K5D   3  
K5D  C03  C4   C   0  1  N  N  R  20.719  16.440  -34.780   4.365   0.477   0.385  C03  K5D   4  
K5D  C05  C5   C   0  1  N  N  N  18.203  16.568  -35.911   1.945   0.223   0.248  C05  K5D   5  
K5D  C06  C6   C   0  1  N  N  N  17.163  17.643  -36.513   0.712  -0.624   0.063  C06  K5D   6  
K5D  C08  C7   C   0  1  Y  N  N  15.608  18.651  -38.405  -1.655  -0.409   0.002  C08  K5D   7  
K5D  C09  C8   C   0  1  Y  N  N  16.001  19.360  -39.553  -1.716  -1.778  -0.217  C09  K5D   8  
K5D  C11  C9   C   0  1  Y  N  N  13.922  20.634  -39.787  -4.107  -1.657  -0.294  C11  K5D   9  
K5D  C12  C10  C   0  1  Y  N  N  13.432  19.987  -38.650  -4.048  -0.292  -0.075  C12  K5D  10  
K5D  C14  C11  C   0  1  Y  N  N  14.266  18.994  -37.988  -2.825   0.333   0.073  C14  K5D  11  
K5D  C16  C12  C   0  1  N  N  N  21.231  15.123  -35.295   4.898   0.982  -0.979  C16  K5D  12  
K5D  C18  C13  C   0  1  N  N  S  22.106  15.410  -33.051   6.801   0.404   0.486  C18  K5D  13  
K5D  C19  C14  C   0  1  N  N  N  23.129  14.460  -33.160   7.389   0.122  -0.898  C19  K5D  14  
K5D  N04  N1   N   0  1  N  N  N  19.508  17.048  -35.392   3.166  -0.346   0.206  N04  K5D  15  
K5D  O01  O1   O   0  1  N  N  N  19.819  16.004  -32.501   5.530  -1.675   0.319  O01  K5D  16  
K5D  O07  O2   O   0  1  N  N  N  16.567  17.641  -37.863  -0.450   0.203   0.148  O07  K5D  17  
K5D  O15  O3   O   0  1  N  N  N  17.998  15.393  -35.752   1.839   1.417   0.433  O15  K5D  18  
K5D  BR1  BR1  BR  0  0  N  N  N  11.582  20.543  -38.133  -5.643   0.719   0.020  BR1  K5D  19  
K5D  H1   H1   H   0  1  N  N  N  15.592  20.799  -41.109  -2.990  -3.463  -0.540  H1   K5D  20  
K5D  H2   H2   H   0  1  N  N  N  22.997  15.482  -34.633   6.736   2.297  -0.823  H2   K5D  21  
K5D  H3   H3   H   0  1  N  N  N  21.257  17.360  -32.930   5.497  -0.458   2.003  H3   K5D  22  
K5D  H4   H4   H   0  1  N  N  N  21.515  17.137  -35.083   4.161   1.313   1.054  H4   K5D  23  
K5D  H5   H5   H   0  1  N  N  N  17.678  18.612  -36.432   0.745  -1.106  -0.914  H5   K5D  24  
K5D  H6   H6   H   0  1  N  N  N  16.305  17.624  -35.824   0.674  -1.385   0.843  H6   K5D  25  
K5D  H7   H7   H   0  1  N  N  N  16.987  19.165  -39.949  -0.807  -2.357  -0.272  H7   K5D  26  
K5D  H8   H8   H   0  1  N  N  N  13.324  21.366  -40.310  -5.063  -2.144  -0.410  H8   K5D  27  
K5D  H9   H9   H   0  1  N  N  N  13.856  18.481  -37.131  -2.779   1.399   0.243  H9   K5D  28  
K5D  H10  H10  H   0  1  N  N  N  20.422  14.379  -35.335   4.380   1.894  -1.276  H10  K5D  29  
K5D  H11  H11  H   0  1  N  N  N  21.671  15.241  -36.296   4.784   0.211  -1.742  H11  K5D  30  
K5D  H12  H12  H   0  1  N  N  N  22.798  16.196  -33.389   7.441   0.799   1.275  H12  K5D  31  
K5D  H13  H13  H   0  1  N  N  N  23.049  13.505  -32.620   7.041  -0.770  -1.419  H13  K5D  32  
K5D  H14  H14  H   0  1  N  N  N  24.179  14.786  -33.174   8.433   0.386  -1.064  H14  K5D  33  
K5D  H15  H15  H   0  1  N  N  N  19.596  18.041  -35.476   3.251  -1.301   0.058  H15  K5D  34  
K5D  H16  H16  H   0  1  N  N  N  20.054  15.989  -31.581   4.760  -2.210   0.556  H16  K5D  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K5D  C10  C11  DOUB  Y  N   1  
K5D  C10  C09  SING  Y  N   2  
K5D  C11  C12  SING  Y  N   3  
K5D  C09  C08  DOUB  Y  N   4  
K5D  C12  BR1  SING  N  N   5  
K5D  C12  C14  DOUB  Y  N   6  
K5D  C08  C14  SING  Y  N   7  
K5D  C08  O07  SING  N  N   8  
K5D  O07  C06  SING  N  N   9  
K5D  C06  C05  SING  N  N  10  
K5D  C05  O15  DOUB  N  N  11  
K5D  C05  N04  SING  N  N  12  
K5D  N04  C03  SING  N  N  13  
K5D  C16  C03  SING  N  N  14  
K5D  C16  C17  SING  N  N  15  
K5D  C03  C02  SING  N  N  16  
K5D  C17  C19  SING  N  N  17  
K5D  C17  C18  SING  N  N  18  
K5D  C02  C18  SING  N  N  19  
K5D  C02  O01  SING  N  N  20  
K5D  C19  C18  SING  N  N  21  
K5D  C10  H1   SING  N  N  22  
K5D  C17  H2   SING  N  N  23  
K5D  C02  H3   SING  N  N  24  
K5D  C03  H4   SING  N  N  25  
K5D  C06  H5   SING  N  N  26  
K5D  C06  H6   SING  N  N  27  
K5D  C09  H7   SING  N  N  28  
K5D  C11  H8   SING  N  N  29  
K5D  C14  H9   SING  N  N  30  
K5D  C16  H10  SING  N  N  31  
K5D  C16  H11  SING  N  N  32  
K5D  C18  H12  SING  N  N  33  
K5D  C19  H13  SING  N  N  34  
K5D  C19  H14  SING  N  N  35  
K5D  N04  H15  SING  N  N  36  
K5D  O01  H16  SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K5D  SMILES            ACDLabs               12.01  "c3cc(Br)cc(OCC(=O)NC2C(C1C(C1)C2)O)c3"  
K5D  InChI             InChI                 1.03   "InChI=1S/C14H16BrNO3/c15-9-2-1-3-10(6-9)19-7-13(17)16-12-5-8-4-11(8)14(12)18/h1-3,6,8,11-12,14,18H,4-5,7H2,(H,16,17)/t8?,11?,12-,14+/m1/s1"  
K5D  InChIKey          InChI                 1.03   ZHUQGQJYDVDPGM-GJBBRRBDSA-N  
K5D  SMILES_CANONICAL  CACTVS                3.385  "O[C@@H]1[C@@H](C[C@@H]2C[C@H]12)NC(=O)COc3cccc(Br)c3"  
K5D  SMILES            CACTVS                3.385  "O[CH]1[CH](C[CH]2C[CH]12)NC(=O)COc3cccc(Br)c3"  
K5D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cc(cc(c1)Br)OCC(=O)N[C@@H]2C[C@@H]3C[C@@H]3[C@@H]2O"  
K5D  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cc(cc(c1)Br)OCC(=O)NC2CC3CC3C2O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K5D  "SYSTEMATIC NAME"  ACDLabs               12.01  "2-(3-bromophenoxy)-N-[(1S,2S,3R,5S)-2-hydroxybicyclo[3.1.0]hexan-3-yl]acetamide"  
K5D  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "2-(3-bromanylphenoxy)-~{N}-[(1~{S},2~{S},3~{R},5~{S})-2-oxidanyl-3-bicyclo[3.1.0]hexanyl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K5D  "Create component"  2018-10-30  RCSB  
K5D  "Initial release"   2019-04-03  RCSB  
##
