data_KSD
# 
_chem_comp.id                                    KSD 
_chem_comp.name                                  "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H29 N O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2019-01-11 
_chem_comp.pdbx_modified_date                    2019-02-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        435.512 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     KSD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6NM8 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
KSD C4  C1  C 0 1 Y N N 8.305  35.585 25.499 -4.398 -2.743 -0.550 C4  KSD 1  
KSD C14 C2  C 0 1 N N N 5.995  36.427 22.601 -1.645 -0.272 0.218  C14 KSD 2  
KSD C5  C3  C 0 1 Y N N 7.171  35.658 24.696 -3.148 -2.205 -0.302 C5  KSD 3  
KSD C6  C4  C 0 1 Y N N 7.247  36.343 23.489 -3.010 -0.851 -0.052 C6  KSD 4  
KSD C11 C5  C 0 1 Y N N 12.240 39.431 22.954 -7.737 2.240  -1.142 C11 KSD 5  
KSD C7  C6  C 0 1 Y N N 10.892 37.520 23.469 -6.576 0.312  -0.306 C7  KSD 6  
KSD C8  C7  C 0 1 Y N N 11.960 36.695 23.141 -7.655 0.028  0.528  C8  KSD 7  
KSD C9  C8  C 0 1 Y N N 13.165 37.239 22.724 -8.769 0.843  0.513  C9  KSD 8  
KSD C10 C9  C 0 1 Y N N 13.313 38.608 22.638 -8.808 1.949  -0.317 C10 KSD 9  
KSD C12 C10 C 0 1 Y N N 11.028 38.899 23.382 -6.623 1.425  -1.144 C12 KSD 10 
KSD C13 C11 C 0 1 N N N 8.437  37.669 21.732 -3.967 1.444  0.225  C13 KSD 11 
KSD N1  N1  N 0 1 N N N -0.511 39.240 21.632 5.332  0.526  -0.190 N1  KSD 12 
KSD C3  C12 C 0 1 Y N N 9.496  36.184 25.094 -5.514 -1.930 -0.554 C3  KSD 13 
KSD C1  C13 C 0 1 Y N N 8.431  36.947 23.078 -4.119 -0.031 -0.048 C1  KSD 14 
KSD C15 C14 C 0 1 Y N N 3.618  36.544 23.047 0.626  -0.956 0.383  C15 KSD 15 
KSD C16 C15 C 0 1 Y N N 2.648  36.743 24.022 1.626  -1.916 0.343  C16 KSD 16 
KSD C17 C16 C 0 1 Y N N 1.370  37.156 23.661 2.945  -1.553 0.570  C17 KSD 17 
KSD C18 C17 C 0 1 Y N N 1.057  37.359 22.324 3.264  -0.230 0.837  C18 KSD 18 
KSD C19 C18 C 0 1 Y N N 2.017  37.139 21.347 2.264  0.730  0.877  C19 KSD 19 
KSD C2  C19 C 0 1 Y N N 9.568  36.874 23.895 -5.380 -0.566 -0.303 C2  KSD 20 
KSD C20 C20 C 0 1 Y N N 3.302  36.736 21.705 0.945  0.367  0.646  C20 KSD 21 
KSD C21 C21 C 0 1 N N N 2.099  36.455 19.044 1.497  2.964  1.151  C21 KSD 22 
KSD C22 C22 C 0 1 N N N 0.861  37.672 25.925 3.525  -3.836 0.250  C22 KSD 23 
KSD C23 C23 C 0 1 N N N -0.372 37.803 21.906 4.697  0.165  1.084  C23 KSD 24 
KSD C24 C24 C 0 1 N N R -1.624 39.739 22.441 6.734  0.917  0.012  C24 KSD 25 
KSD C25 C25 C 0 1 N N N -1.145 39.939 23.885 7.508  0.688  -1.260 C25 KSD 26 
KSD C26 C26 C 0 1 N N N -2.205 41.040 21.897 6.800  2.398  0.390  C26 KSD 27 
KSD O1  O1  O 0 1 N N N 4.916  36.123 23.460 -0.667 -1.312 0.161  O1  KSD 28 
KSD O2  O2  O 0 1 N N N 1.656  37.368 20.002 2.577  2.027  1.135  O2  KSD 29 
KSD O3  O3  O 0 1 N N N 0.386  37.379 24.644 3.925  -2.493 0.530  O3  KSD 30 
KSD O4  O4  O 0 1 N N N 0.099  40.092 24.169 6.950  0.244  -2.235 O4  KSD 31 
KSD O5  O5  O 0 1 N N N -2.027 39.936 24.795 8.818  0.976  -1.310 O5  KSD 32 
KSD H1  H1  H 0 1 N N N 8.262  35.061 26.442 -4.501 -3.800 -0.745 H1  KSD 33 
KSD H2  H2  H 0 1 N N N 6.053  35.697 21.780 -1.416 0.484  -0.533 H2  KSD 34 
KSD H3  H3  H 0 1 N N N 5.884  37.439 22.184 -1.633 0.183  1.208  H3  KSD 35 
KSD H4  H4  H 0 1 N N N 6.248  35.191 25.005 -2.278 -2.843 -0.305 H4  KSD 36 
KSD H5  H5  H 0 1 N N N 12.348 40.502 22.866 -7.775 3.102  -1.791 H5  KSD 37 
KSD H6  H6  H 0 1 N N N 11.851 35.623 23.211 -7.624 -0.833 1.178  H6  KSD 38 
KSD H7  H7  H 0 1 N N N 13.989 36.590 22.466 -9.606 0.624  1.159  H7  KSD 39 
KSD H8  H8  H 0 1 N N N 14.255 39.036 22.328 -9.679 2.589  -0.319 H8  KSD 40 
KSD H9  H9  H 0 1 N N N 10.206 39.549 23.643 -5.789 1.650  -1.792 H9  KSD 41 
KSD H10 H10 H 0 1 N N N 8.155  38.722 21.879 -3.857 1.978  -0.719 H10 KSD 42 
KSD H11 H11 H 0 1 N N N 9.444  37.617 21.293 -4.849 1.809  0.749  H11 KSD 43 
KSD H12 H12 H 0 1 N N N 7.716  37.188 21.055 -3.083 1.610  0.841  H12 KSD 44 
KSD H13 H13 H 0 1 N N N 0.332  39.718 21.880 5.260  -0.228 -0.857 H13 KSD 45 
KSD H15 H15 H 0 1 N N N 10.372 36.110 25.721 -6.489 -2.351 -0.753 H15 KSD 46 
KSD H16 H16 H 0 1 N N N 2.887  36.577 25.062 1.378  -2.946 0.134  H16 KSD 47 
KSD H17 H17 H 0 1 N N N 4.050  36.573 20.944 0.166  1.115  0.677  H17 KSD 48 
KSD H18 H18 H 0 1 N N N 1.742  36.763 18.050 1.884  3.959  1.368  H18 KSD 49 
KSD H19 H19 H 0 1 N N N 3.199  36.427 19.046 1.006  2.968  0.178  H19 KSD 50 
KSD H20 H20 H 0 1 N N N 1.706  35.455 19.281 0.780  2.677  1.920  H20 KSD 51 
KSD H21 H21 H 0 1 N N N 0.011  37.826 26.606 2.825  -4.174 1.014  H21 KSD 52 
KSD H22 H22 H 0 1 N N N 1.475  36.835 26.289 3.043  -3.875 -0.727 H22 KSD 53 
KSD H23 H23 H 0 1 N N N 1.472  38.586 25.889 4.402  -4.484 0.248  H23 KSD 54 
KSD H24 H24 H 0 1 N N N -1.064 37.540 22.719 5.232  -0.672 1.532  H24 KSD 55 
KSD H25 H25 H 0 1 N N N -0.650 37.252 20.996 4.727  1.019  1.760  H25 KSD 56 
KSD H26 H26 H 0 1 N N N -2.424 38.984 22.450 7.166  0.318  0.814  H26 KSD 57 
KSD H27 H27 H 0 1 N N N -3.035 41.369 22.540 6.240  2.564  1.310  H27 KSD 58 
KSD H28 H28 H 0 1 N N N -1.423 41.813 21.884 7.840  2.688  0.540  H28 KSD 59 
KSD H29 H29 H 0 1 N N N -2.576 40.876 20.875 6.368  2.997  -0.412 H29 KSD 60 
KSD H30 H30 H 0 1 N N N -1.611 40.058 25.640 9.272  0.812  -2.147 H30 KSD 61 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
KSD C21 O2  SING N N 1  
KSD O2  C19 SING N N 2  
KSD C19 C20 DOUB Y N 3  
KSD C19 C18 SING Y N 4  
KSD N1  C23 SING N N 5  
KSD N1  C24 SING N N 6  
KSD C20 C15 SING Y N 7  
KSD C13 C1  SING N N 8  
KSD C26 C24 SING N N 9  
KSD C23 C18 SING N N 10 
KSD C18 C17 DOUB Y N 11 
KSD C24 C25 SING N N 12 
KSD C14 O1  SING N N 13 
KSD C14 C6  SING N N 14 
KSD C10 C9  DOUB Y N 15 
KSD C10 C11 SING Y N 16 
KSD C9  C8  SING Y N 17 
KSD C11 C12 DOUB Y N 18 
KSD C15 O1  SING N N 19 
KSD C15 C16 DOUB Y N 20 
KSD C1  C6  DOUB Y N 21 
KSD C1  C2  SING Y N 22 
KSD C8  C7  DOUB Y N 23 
KSD C12 C7  SING Y N 24 
KSD C7  C2  SING N N 25 
KSD C6  C5  SING Y N 26 
KSD C17 C16 SING Y N 27 
KSD C17 O3  SING N N 28 
KSD C25 O4  DOUB N N 29 
KSD C25 O5  SING N N 30 
KSD C2  C3  DOUB Y N 31 
KSD O3  C22 SING N N 32 
KSD C5  C4  DOUB Y N 33 
KSD C3  C4  SING Y N 34 
KSD C4  H1  SING N N 35 
KSD C14 H2  SING N N 36 
KSD C14 H3  SING N N 37 
KSD C5  H4  SING N N 38 
KSD C11 H5  SING N N 39 
KSD C8  H6  SING N N 40 
KSD C9  H7  SING N N 41 
KSD C10 H8  SING N N 42 
KSD C12 H9  SING N N 43 
KSD C13 H10 SING N N 44 
KSD C13 H11 SING N N 45 
KSD C13 H12 SING N N 46 
KSD N1  H13 SING N N 47 
KSD C3  H15 SING N N 48 
KSD C16 H16 SING N N 49 
KSD C20 H17 SING N N 50 
KSD C21 H18 SING N N 51 
KSD C21 H19 SING N N 52 
KSD C21 H20 SING N N 53 
KSD C22 H21 SING N N 54 
KSD C22 H22 SING N N 55 
KSD C22 H23 SING N N 56 
KSD C23 H24 SING N N 57 
KSD C23 H25 SING N N 58 
KSD C24 H26 SING N N 59 
KSD C26 H27 SING N N 60 
KSD C26 H28 SING N N 61 
KSD C26 H29 SING N N 62 
KSD O5  H30 SING N N 63 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
KSD SMILES           ACDLabs              12.01 "c3cc(COc1cc(OC)c(c(c1)OC)CNC(C(=O)O)C)c(C)c(c2ccccc2)c3"                                                                                                             
KSD InChI            InChI                1.03  "InChI=1S/C26H29NO5/c1-17-20(11-8-12-22(17)19-9-6-5-7-10-19)16-32-21-13-24(30-3)23(25(14-21)31-4)15-27-18(2)26(28)29/h5-14,18,27H,15-16H2,1-4H3,(H,28,29)/t18-/m1/s1" 
KSD InChIKey         InChI                1.03  JAVOOZFIZRTIMB-GOSISDBHSA-N                                                                                                                                           
KSD SMILES_CANONICAL CACTVS               3.385 "COc1cc(OCc2cccc(c2C)c3ccccc3)cc(OC)c1CN[C@H](C)C(O)=O"                                                                                                               
KSD SMILES           CACTVS               3.385 "COc1cc(OCc2cccc(c2C)c3ccccc3)cc(OC)c1CN[CH](C)C(O)=O"                                                                                                                
KSD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2ccccc2)COc3cc(c(c(c3)OC)CN[C@H](C)C(=O)O)OC"                                                                                                             
KSD SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(cccc1c2ccccc2)COc3cc(c(c(c3)OC)CNC(C)C(=O)O)OC"                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
KSD "SYSTEMATIC NAME" ACDLabs              12.01 "N-({2,6-dimethoxy-4-[(2-methyl[1,1'-biphenyl]-3-yl)methoxy]phenyl}methyl)-D-alanine"              
KSD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R})-2-[[2,6-dimethoxy-4-[(2-methyl-3-phenyl-phenyl)methoxy]phenyl]methylamino]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
KSD "Create component" 2019-01-11 RCSB 
KSD "Initial release"  2019-02-20 RCSB 
# 
