data_M2D
# 
_chem_comp.id                                    M2D 
_chem_comp.name                                  "Madumycin II" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H37 N3 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2017-06-20 
_chem_comp.pdbx_modified_date                    2017-06-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        503.588 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     M2D 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5VP2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
M2D CBA C1  C 0 1 N N N 83.583 -47.475 -10.079 0.567  1.929  -1.896 CBA M2D 1  
M2D CAZ C2  C 0 1 N N N 83.623 -48.375 -8.840  1.852  2.082  -1.080 CAZ M2D 2  
M2D CBJ C3  C 0 1 N N N 85.056 -48.415 -8.295  3.008  2.453  -2.012 CBJ M2D 3  
M2D CAB C4  C 0 1 N N R 83.200 -49.810 -9.178  1.665  3.184  -0.035 CAB M2D 4  
M2D OAA O1  O 0 1 N N N 83.144 -50.513 -7.941  0.346  3.068  0.559  OAA M2D 5  
M2D C   C5  C 0 1 N N N 83.869 -51.656 -7.894  -0.668 3.665  -0.087 C   M2D 6  
M2D O   O2  O 0 1 N N N 84.561 -52.088 -8.813  -0.458 4.267  -1.113 O   M2D 7  
M2D CA  C6  C 0 1 N N R 83.759 -52.314 -6.680  -2.067 3.586  0.466  CA  M2D 8  
M2D CB  C7  C 0 1 N N N 82.293 -52.642 -6.396  -3.005 4.440  -0.389 CB  M2D 9  
M2D N   N1  N 0 1 N N N 84.559 -53.544 -6.612  -2.516 2.185  0.440  N   M2D 10 
M2D CAY C8  C 0 1 N N N 85.843 -53.496 -6.085  -3.849 1.943  0.380  CAY M2D 11 
M2D OBI O3  O 0 1 N N N 86.308 -52.421 -5.711  -4.642 2.864  0.350  OBI M2D 12 
M2D CAT C9  C 0 1 Y N N 86.525 -54.631 -5.982  -4.324 0.547  0.352  CAT M2D 13 
M2D NAU N2  N 0 1 Y N N 85.962 -55.740 -6.451  -3.545 -0.568 0.380  NAU M2D 14 
M2D CAS C10 C 0 1 Y N N 87.717 -54.933 -5.477  -5.618 0.130  0.294  CAS M2D 15 
M2D OAR O4  O 0 1 Y N N 87.894 -56.265 -5.638  -5.596 -1.213 0.288  OAR M2D 16 
M2D CAQ C11 C 0 1 Y N N 86.783 -56.761 -6.243  -4.318 -1.612 0.340  CAQ M2D 17 
M2D CAP C12 C 0 1 N N N 86.408 -58.032 -6.674  -3.847 -3.044 0.351  CAP M2D 18 
M2D CAO C13 C 0 1 N N S 85.437 -58.736 -5.747  -2.520 -3.146 -0.403 CAO M2D 19 
M2D OBF O5  O 0 1 N N N 84.334 -57.881 -5.426  -2.052 -1.834 -0.724 OBF M2D 20 
M2D CAN C14 C 0 1 N N N 84.942 -60.029 -6.438  -1.486 -3.856 0.474  CAN M2D 21 
M2D CAM C15 C 0 1 N N S 83.464 -59.987 -6.896  -0.453 -4.548 -0.418 CAM M2D 22 
M2D OBE O6  O 0 1 N N N 83.107 -61.310 -7.325  -0.959 -5.818 -0.835 OBE M2D 23 
M2D CAL C16 C 0 1 N N N 83.190 -59.089 -7.946  0.827  -4.747 0.350  CAL M2D 24 
M2D CAK C17 C 0 1 N N N 82.078 -58.228 -7.991  1.926  -4.086 -0.009 CAK M2D 25 
M2D CBD C18 C 0 1 N N N 81.188 -58.178 -6.922  1.855  -3.143 -1.183 CBD M2D 26 
M2D CAJ C19 C 0 1 N N N 81.956 -57.418 -9.131  3.184  -4.314 0.705  CAJ M2D 27 
M2D CAI C20 C 0 1 N N N 81.074 -56.435 -9.621  4.016  -3.340 1.041  CAI M2D 28 
M2D CAH C21 C 0 1 N N N 79.926 -55.808 -9.121  3.728  -1.894 0.747  CAH M2D 29 
M2D NAG N3  N 0 1 N N N 80.211 -54.356 -8.896  4.930  -1.257 0.191  NAG M2D 30 
M2D CAF C22 C 0 1 N N N 80.785 -53.453 -9.828  4.983  0.093  0.137  CAF M2D 31 
M2D OBC O7  O 0 1 N N N 81.086 -53.795 -10.967 5.957  0.645  -0.339 OBC M2D 32 
M2D CAE C23 C 0 1 N N N 81.010 -52.133 -9.449  3.863  0.895  0.651  CAE M2D 33 
M2D CAD C24 C 0 1 N N N 81.584 -51.185 -10.292 3.879  2.219  0.524  CAD M2D 34 
M2D CAC C25 C 0 1 N N R 81.824 -49.878 -9.863  2.731  3.040  1.053  CAC M2D 35 
M2D CBB C26 C 0 1 N N N 80.752 -49.435 -8.870  3.238  4.426  1.455  CBB M2D 36 
M2D H1  H1  H 0 1 N N N 83.891 -46.456 -9.803  0.701  1.144  -2.641 H1  M2D 37 
M2D H2  H2  H 0 1 N N N 84.269 -47.871 -10.842 -0.256 1.665  -1.232 H2  M2D 38 
M2D H3  H3  H 0 1 N N N 82.560 -47.452 -10.482 0.342  2.871  -2.398 H3  M2D 39 
M2D H4  H4  H 0 1 N N N 82.951 -47.968 -8.070  2.078  1.140  -0.579 H4  M2D 40 
M2D H5  H5  H 0 1 N N N 85.092 -49.060 -7.405  2.766  3.375  -2.541 H5  M2D 41 
M2D H6  H6  H 0 1 N N N 85.730 -48.816 -9.066  3.915  2.598  -1.426 H6  M2D 42 
M2D H7  H7  H 0 1 N N N 85.374 -47.397 -8.024  3.165  1.651  -2.733 H7  M2D 43 
M2D H8  H8  H 0 1 N N N 83.953 -50.258 -9.843  1.764  4.158  -0.514 H8  M2D 44 
M2D H9  H9  H 0 1 N N N 84.102 -51.644 -5.878  -2.074 3.952  1.493  H9  M2D 45 
M2D H10 H10 H 0 1 N N N 82.214 -53.164 -5.431  -3.216 3.922  -1.325 H10 M2D 46 
M2D H11 H11 H 0 1 N N N 81.710 -51.710 -6.358  -3.937 4.609  0.150  H11 M2D 47 
M2D H12 H12 H 0 1 N N N 81.900 -53.288 -7.195  -2.530 5.398  -0.603 H12 M2D 48 
M2D H13 H13 H 0 1 N N N 84.182 -54.409 -6.943  -1.877 1.456  0.464  H13 M2D 49 
M2D H14 H14 H 0 1 N N N 88.414 -54.244 -5.023  -6.495 0.759  0.259  H14 M2D 50 
M2D H15 H15 H 0 1 N N N 85.935 -57.936 -7.662  -3.707 -3.373 1.380  H15 M2D 51 
M2D H16 H16 H 0 1 N N N 87.314 -58.650 -6.759  -4.591 -3.675 -0.135 H16 M2D 52 
M2D H17 H17 H 0 1 N N N 85.970 -59.019 -4.827  -2.667 -3.714 -1.322 H17 M2D 53 
M2D H18 H18 H 0 1 N N N 83.737 -58.338 -4.845  -2.658 -1.326 -1.280 H18 M2D 54 
M2D H19 H19 H 0 1 N N N 85.059 -60.863 -5.730  -0.986 -3.125 1.110  H19 M2D 55 
M2D H20 H20 H 0 1 N N N 85.571 -60.208 -7.323  -1.985 -4.598 1.096  H20 M2D 56 
M2D H21 H21 H 0 1 N N N 82.854 -59.719 -6.021  -0.259 -3.930 -1.295 H21 M2D 57 
M2D H22 H22 H 0 1 N N N 83.286 -61.929 -6.627  -0.356 -6.314 -1.405 H22 M2D 58 
M2D H23 H23 H 0 1 N N N 83.882 -59.059 -8.775  0.856  -5.424 1.190  H23 M2D 59 
M2D H25 H25 H 0 1 N N N 81.495 -58.904 -6.155  1.191  -2.312 -0.943 H25 M2D 60 
M2D H26 H26 H 0 1 N N N 81.190 -57.166 -6.491  2.852  -2.760 -1.403 H26 M2D 61 
M2D H27 H27 H 0 1 N N N 80.176 -58.424 -7.276  1.471  -3.674 -2.054 H27 M2D 62 
M2D H28 H28 H 0 1 N N N 82.763 -57.599 -9.826  3.431  -5.320 1.034  H28 M2D 63 
M2D H29 H29 H 0 1 N N N 81.345 -56.085 -10.606 4.943  -3.598 1.548  H29 M2D 64 
M2D H31 H31 H 0 1 N N N 79.105 -55.913 -9.846  2.914  -1.825 0.025  H31 M2D 65 
M2D H32 H32 H 0 1 N N N 79.637 -56.277 -8.169  3.440  -1.386 1.668  H32 M2D 66 
M2D H33 H33 H 0 1 N N N 79.973 -53.985 -7.998  5.671  -1.795 -0.129 H33 M2D 67 
M2D H34 H34 H 0 1 N N N 80.726 -51.829 -8.452  3.023  0.412  1.129  H34 M2D 68 
M2D H35 H35 H 0 1 N N N 81.850 -51.467 -11.300 4.714  2.705  0.041  H35 M2D 69 
M2D H36 H36 H 0 1 N N N 81.823 -49.185 -10.717 2.300  2.544  1.923  H36 M2D 70 
M2D H37 H37 H 0 1 N N N 80.957 -48.405 -8.544  3.669  4.922  0.585  H37 M2D 71 
M2D H38 H38 H 0 1 N N N 79.765 -49.477 -9.354  2.408  5.020  1.838  H38 M2D 72 
M2D H39 H39 H 0 1 N N N 80.761 -50.105 -7.997  3.999  4.325  2.229  H39 M2D 73 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
M2D OBC CAF DOUB N N 1  
M2D CAD CAC SING N N 2  
M2D CAD CAE DOUB N E 3  
M2D CBA CAZ SING N N 4  
M2D CAC CAB SING N N 5  
M2D CAC CBB SING N N 6  
M2D CAF CAE SING N N 7  
M2D CAF NAG SING N N 8  
M2D CAI CAJ DOUB N Z 9  
M2D CAI CAH SING N N 10 
M2D CAB CAZ SING N N 11 
M2D CAB OAA SING N N 12 
M2D CAJ CAK SING N N 13 
M2D CAH NAG SING N N 14 
M2D CAZ CBJ SING N N 15 
M2D O   C   DOUB N N 16 
M2D CAK CAL DOUB N E 17 
M2D CAK CBD SING N N 18 
M2D CAL CAM SING N N 19 
M2D OAA C   SING N N 20 
M2D C   CA  SING N N 21 
M2D OBE CAM SING N N 22 
M2D CAM CAN SING N N 23 
M2D CA  N   SING N N 24 
M2D CA  CB  SING N N 25 
M2D CAP CAQ SING N N 26 
M2D CAP CAO SING N N 27 
M2D N   CAY SING N N 28 
M2D NAU CAQ DOUB Y N 29 
M2D NAU CAT SING Y N 30 
M2D CAN CAO SING N N 31 
M2D CAQ OAR SING Y N 32 
M2D CAY CAT SING N N 33 
M2D CAY OBI DOUB N N 34 
M2D CAT CAS DOUB Y N 35 
M2D CAO OBF SING N N 36 
M2D OAR CAS SING Y N 37 
M2D CBA H1  SING N N 38 
M2D CBA H2  SING N N 39 
M2D CBA H3  SING N N 40 
M2D CAZ H4  SING N N 41 
M2D CBJ H5  SING N N 42 
M2D CBJ H6  SING N N 43 
M2D CBJ H7  SING N N 44 
M2D CAB H8  SING N N 45 
M2D CA  H9  SING N N 46 
M2D CB  H10 SING N N 47 
M2D CB  H11 SING N N 48 
M2D CB  H12 SING N N 49 
M2D N   H13 SING N N 50 
M2D CAS H14 SING N N 51 
M2D CAP H15 SING N N 52 
M2D CAP H16 SING N N 53 
M2D CAO H17 SING N N 54 
M2D OBF H18 SING N N 55 
M2D CAN H19 SING N N 56 
M2D CAN H20 SING N N 57 
M2D CAM H21 SING N N 58 
M2D OBE H22 SING N N 59 
M2D CAL H23 SING N N 60 
M2D CBD H25 SING N N 61 
M2D CBD H26 SING N N 62 
M2D CBD H27 SING N N 63 
M2D CAJ H28 SING N N 64 
M2D CAI H29 SING N N 65 
M2D CAH H31 SING N N 66 
M2D CAH H32 SING N N 67 
M2D NAG H33 SING N N 68 
M2D CAE H34 SING N N 69 
M2D CAD H35 SING N N 70 
M2D CAC H36 SING N N 71 
M2D CBB H37 SING N N 72 
M2D CBB H38 SING N N 73 
M2D CBB H39 SING N N 74 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
M2D InChI            InChI                1.03  
"InChI=1S/C26H37N3O7/c1-15(2)24-17(4)8-9-22(32)27-10-6-7-16(3)11-19(30)12-20(31)13-23-29-21(14-35-23)25(33)28-18(5)26(34)36-24/h6-9,11,14-15,17-20,24,30-31H,10,12-13H2,1-5H3,(H,27,32)(H,28,33)/b7-6-,9-8+,16-11+/t17-,18-,19-,20+,24-/m1/s1" 
M2D InChIKey         InChI                1.03  SAQNYTQFLPVTNJ-YHZICBGDSA-N 
M2D SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H]1OC(=O)[C@@H](C)NC(=O)c2coc(C[C@@H](O)C[C@H](O)/C=C(C)/C=C\CNC(=O)/C=C/[C@H]1C)n2" 
M2D SMILES           CACTVS               3.385 "CC(C)[CH]1OC(=O)[CH](C)NC(=O)c2coc(C[CH](O)C[CH](O)C=C(C)C=CCNC(=O)C=C[CH]1C)n2" 
M2D SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C[C@@H]1/C=C/C(=O)NC/C=C\C(=C\[C@H](C[C@@H](Cc2nc(co2)C(=O)N[C@@H](C(=O)O[C@@H]1C(C)C)C)O)O)\C" 
M2D SMILES           "OpenEye OEToolkits" 2.0.6 "CC1C=CC(=O)NCC=CC(=CC(CC(Cc2nc(co2)C(=O)NC(C(=O)OC1C(C)C)C)O)O)C" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
M2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(4~{R},7~{R},8~{R},9~{E},14~{Z},16~{E},18~{S},20~{S})-4,8,16-trimethyl-18,20-bis(oxidanyl)-7-propan-2-yl-6,23-dioxa-3,12,25-triazabicyclo[20.2.1]pentacosa-1(24),9,14,16,22(25)-pentaene-2,5,11-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
M2D "Create component" 2017-06-20 EBI  
M2D "Initial release"  2017-06-28 RCSB 
# 
