data_S9D
#

_chem_comp.id                                   S9D
_chem_comp.name                                 "2-[4-[(3~{S})-pyrazolidin-3-yl]phenoxy]pyrimidine"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C13 H14 N4 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-03-06
_chem_comp.pdbx_modified_date                   2020-04-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       242.276
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    S9D
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5RAR
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
S9D  C10  C1   C  0  1  N  N  S  -27.218  100.294  134.214   3.296   0.054   0.620  C10  S9D   1  
S9D  C15  C2   C  0  1  Y  N  N  -27.134  101.409  136.562   1.389  -0.710  -0.809  C15  S9D   2  
S9D  C01  C3   C  0  1  Y  N  N  -30.189   98.126  141.649  -4.856   1.525  -0.176  C01  S9D   3  
S9D  C02  C4   C  0  1  Y  N  N  -30.037   98.146  140.277  -3.525   1.813   0.081  C02  S9D   4  
S9D  C04  C5   C  0  1  Y  N  N  -28.090   99.406  140.487  -3.027  -0.426  -0.091  C04  S9D   5  
S9D  C06  C6   C  0  1  Y  N  N  -27.001  100.145  138.565  -0.798  -1.061   0.109  C06  S9D   6  
S9D  C07  C7   C  0  1  Y  N  N  -26.970   98.949  137.771  -0.329  -0.692   1.362  C07  S9D   7  
S9D  C08  C8   C  0  1  Y  N  N  -27.024   99.018  136.377   0.993  -0.324   1.523  C08  S9D   8  
S9D  C09  C9   C  0  1  Y  N  N  -27.087  100.235  135.752   1.852  -0.337   0.440  C09  S9D   9  
S9D  C11  C10  C  0  1  N  N  N  -26.512   99.479  133.416   3.538   1.493   0.110  C11  S9D  10  
S9D  C12  C11  C  0  1  N  N  N  -26.776  100.062  132.055   4.918   1.432  -0.575  C12  S9D  11  
S9D  C16  C12  C  0  1  Y  N  N  -27.077  101.352  137.975   0.065  -1.069  -0.977  C16  S9D  12  
S9D  C18  C13  C  0  1  Y  N  N  -29.235   98.781  142.404  -5.219   0.205  -0.388  C18  S9D  13  
S9D  N03  N1   N  0  1  Y  N  N  -28.982   98.780  139.735  -2.647   0.824   0.116  N03  S9D  14  
S9D  N13  N2   N  0  1  N  N  N  -27.238  101.544  132.272   5.389   0.038  -0.410  N13  S9D  15  
S9D  N14  N3   N  0  1  N  N  N  -27.155  101.747  133.570   4.176  -0.777  -0.244  N14  S9D  16  
S9D  N17  N4   N  0  1  Y  N  N  -28.216   99.394  141.804  -4.289  -0.735  -0.344  N17  S9D  17  
S9D  O05  O1   O  0  1  N  N  N  -26.967  100.072  139.932  -2.100  -1.414  -0.054  O05  S9D  18  
S9D  H1   H1   H  0  1  N  N  N  -28.267  100.008  134.048   3.589  -0.037   1.666  H1   S9D  19  
S9D  H2   H2   H  0  1  N  N  N  -27.216  102.373  136.081   2.061  -0.715  -1.654  H2   S9D  20  
S9D  H3   H3   H  0  1  N  N  N  -31.021   97.618  142.114  -5.595   2.312  -0.206  H3   S9D  21  
S9D  H4   H4   H  0  1  N  N  N  -30.761   97.656  139.643  -3.208   2.831   0.250  H4   S9D  22  
S9D  H5   H5   H  0  1  N  N  N  -26.904   97.987  138.257  -0.999  -0.686   2.209  H5   S9D  23  
S9D  H6   H6   H  0  1  N  N  N  -27.016   98.111  135.791   1.358  -0.037   2.498  H6   S9D  24  
S9D  H7   H7   H  0  1  N  N  N  -26.874   98.443  133.483   2.769   1.776  -0.608  H7   S9D  25  
S9D  H8   H8   H  0  1  N  N  N  -25.440   99.510  133.662   3.556   2.194   0.944  H8   S9D  26  
S9D  H9   H9   H  0  1  N  N  N  -27.566   99.491  131.546   4.822   1.674  -1.634  H9   S9D  27  
S9D  H10  H10  H  0  1  N  N  N  -25.858  100.037  131.449   5.610   2.122  -0.092  H10  S9D  28  
S9D  H11  H11  H  0  1  N  N  N  -27.094  102.256  138.566  -0.297  -1.355  -1.954  H11  S9D  29  
S9D  H12  H12  H  0  1  N  N  N  -29.316   98.796  143.481  -6.249  -0.054  -0.586  H12  S9D  30  
S9D  H13  H13  H  0  1  N  N  N  -26.637  102.174  131.780   5.919  -0.262  -1.214  H13  S9D  31  
S9D  H14  H14  H  0  1  N  N  N  -26.293  102.198  133.802   3.737  -0.958  -1.134  H14  S9D  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
S9D  C12  N13  SING  N  N   1  
S9D  C12  C11  SING  N  N   2  
S9D  N13  N14  SING  N  N   3  
S9D  C11  C10  SING  N  N   4  
S9D  N14  C10  SING  N  N   5  
S9D  C10  C09  SING  N  N   6  
S9D  C09  C08  DOUB  Y  N   7  
S9D  C09  C15  SING  Y  N   8  
S9D  C08  C07  SING  Y  N   9  
S9D  C15  C16  DOUB  Y  N  10  
S9D  C07  C06  DOUB  Y  N  11  
S9D  C16  C06  SING  Y  N  12  
S9D  C06  O05  SING  N  N  13  
S9D  N03  C02  DOUB  Y  N  14  
S9D  N03  C04  SING  Y  N  15  
S9D  O05  C04  SING  N  N  16  
S9D  C02  C01  SING  Y  N  17  
S9D  C04  N17  DOUB  Y  N  18  
S9D  C01  C18  DOUB  Y  N  19  
S9D  N17  C18  SING  Y  N  20  
S9D  C10  H1   SING  N  N  21  
S9D  C15  H2   SING  N  N  22  
S9D  C01  H3   SING  N  N  23  
S9D  C02  H4   SING  N  N  24  
S9D  C07  H5   SING  N  N  25  
S9D  C08  H6   SING  N  N  26  
S9D  C11  H7   SING  N  N  27  
S9D  C11  H8   SING  N  N  28  
S9D  C12  H9   SING  N  N  29  
S9D  C12  H10  SING  N  N  30  
S9D  C16  H11  SING  N  N  31  
S9D  C18  H12  SING  N  N  32  
S9D  N13  H13  SING  N  N  33  
S9D  N14  H14  SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
S9D  InChI             InChI                 1.03   "InChI=1S/C13H14N4O/c1-7-14-13(15-8-1)18-11-4-2-10(3-5-11)12-6-9-16-17-12/h1-5,7-8,12,16-17H,6,9H2/t12-/m0/s1"  
S9D  InChIKey          InChI                 1.03   IZVIOVJMKGPYAR-LBPRGKRZSA-N  
S9D  SMILES_CANONICAL  CACTVS                3.385  "C1C[C@H](NN1)c2ccc(Oc3ncccn3)cc2"  
S9D  SMILES            CACTVS                3.385  "C1C[CH](NN1)c2ccc(Oc3ncccn3)cc2"  
S9D  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "c1cnc(nc1)Oc2ccc(cc2)[C@@H]3CCNN3"  
S9D  SMILES            "OpenEye OEToolkits"  2.0.6  "c1cnc(nc1)Oc2ccc(cc2)C3CCNN3"  
#
_pdbx_chem_comp_identifier.comp_id          S9D
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.6
_pdbx_chem_comp_identifier.identifier       "2-[4-[(3~{S})-pyrazolidin-3-yl]phenoxy]pyrimidine"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
S9D  "Create component"  2020-03-06  RCSB  
S9D  "Initial release"   2020-04-22  RCSB  
##
