data_VDD
# 
_chem_comp.id                                    VDD 
_chem_comp.name                                  "(2S)-2-[(pyridin-2-yl)sulfanyl]propanoic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C8 H9 N O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-29 
_chem_comp.pdbx_modified_date                    2022-10-28 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        183.228 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VDD 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7FLI 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VDD C7 C1 C 0 1 Y N N 26.947 15.319 38.818 2.646  1.445  0.211  C7 VDD 1  
VDD O1 O1 O 0 1 N N N 31.989 16.036 42.976 -3.773 0.880  0.655  O1 VDD 2  
VDD C1 C2 C 0 1 N N S 29.864 16.377 41.845 -1.413 0.432  0.088  C1 VDD 3  
VDD C5 C3 C 0 1 Y N N 28.441 14.693 37.127 3.630  -0.725 0.024  C5 VDD 4  
VDD C6 C4 C 0 1 Y N N 27.173 14.709 37.596 3.773  0.651  0.146  C6 VDD 5  
VDD C4 C5 C 0 1 Y N N 29.458 15.241 37.873 2.353  -1.254 -0.030 C4 VDD 6  
VDD C3 C6 C 0 1 Y N N 29.138 15.793 39.099 1.261  -0.393 0.036  C3 VDD 7  
VDD C2 C7 C 0 1 N N N 31.108 16.857 42.670 -2.861 0.024  0.168  C2 VDD 8  
VDD O  O2 O 0 1 N N N 31.141 18.064 42.917 -3.201 -1.073 -0.206 O  VDD 9  
VDD C  C8 C 0 1 N N N 29.433 14.967 42.154 -1.197 1.307  -1.149 C  VDD 10 
VDD S  S1 S 0 1 N N N 30.446 16.351 40.130 -0.373 -1.050 -0.031 S  VDD 11 
VDD N  N1 N 0 1 Y N N 27.894 15.862 39.560 1.439  0.914  0.157  N  VDD 12 
VDD H1 H1 H 0 1 N N N 25.933 15.353 39.187 2.753  2.516  0.311  H1 VDD 13 
VDD H2 H2 H 0 1 N N N 32.694 16.482 43.431 -4.690 0.573  0.687  H2 VDD 14 
VDD H3 H3 H 0 1 N N N 29.033 17.094 41.919 -1.143 0.994  0.982  H3 VDD 15 
VDD H4 H4 H 0 1 N N N 28.655 14.250 36.166 4.496  -1.367 -0.029 H4 VDD 16 
VDD H5 H5 H 0 1 N N N 26.365 14.261 37.037 4.757  1.095  0.190  H5 VDD 17 
VDD H6 H6 H 0 1 N N N 30.476 15.240 37.512 2.205  -2.319 -0.125 H6 VDD 18 
VDD H7 H7 H 0 1 N N N 29.066 14.914 43.190 -0.149 1.602  -1.207 H7 VDD 19 
VDD H8 H8 H 0 1 N N N 28.629 14.670 41.464 -1.466 0.744  -2.043 H8 VDD 20 
VDD H9 H9 H 0 1 N N N 30.289 14.287 42.034 -1.822 2.197  -1.078 H9 VDD 21 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VDD C5 C6 DOUB Y N 1  
VDD C5 C4 SING Y N 2  
VDD C6 C7 SING Y N 3  
VDD C4 C3 DOUB Y N 4  
VDD C7 N  DOUB Y N 5  
VDD C3 N  SING Y N 6  
VDD C3 S  SING N N 7  
VDD S  C1 SING N N 8  
VDD C1 C  SING N N 9  
VDD C1 C2 SING N N 10 
VDD C2 O  DOUB N N 11 
VDD C2 O1 SING N N 12 
VDD C7 H1 SING N N 13 
VDD O1 H2 SING N N 14 
VDD C1 H3 SING N N 15 
VDD C5 H4 SING N N 16 
VDD C6 H5 SING N N 17 
VDD C4 H6 SING N N 18 
VDD C  H7 SING N N 19 
VDD C  H8 SING N N 20 
VDD C  H9 SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VDD SMILES           ACDLabs              12.01 "CC(Sc1ccccn1)C(=O)O"                                                           
VDD InChI            InChI                1.06  "InChI=1S/C8H9NO2S/c1-6(8(10)11)12-7-4-2-3-5-9-7/h2-6H,1H3,(H,10,11)/t6-/m0/s1" 
VDD InChIKey         InChI                1.06  FAAIBCMHMKYUAH-LURJTMIESA-N                                                     
VDD SMILES_CANONICAL CACTVS               3.385 "C[C@H](Sc1ccccn1)C(O)=O"                                                       
VDD SMILES           CACTVS               3.385 "C[CH](Sc1ccccn1)C(O)=O"                                                        
VDD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)Sc1ccccn1"                                                      
VDD SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)Sc1ccccn1"                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VDD "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-[(pyridin-2-yl)sulfanyl]propanoic acid" 
VDD "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-pyridin-2-ylsulfanylpropanoic acid"  
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VDD "Create component" 2022-08-29 RCSB 
VDD "Initial release"  2022-11-02 RCSB 
# 
