data_XJD
#

_chem_comp.id                                   XJD
_chem_comp.name                                 "(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H50 N O8 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-17
_chem_comp.pdbx_modified_date                   2021-09-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       523.640
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XJD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7L2H
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XJD  C11  C1   C  0  1  N  N  N  150.064  144.187   93.638   -4.860   2.998  -2.360  C11  XJD   1  
XJD  C12  C2   C  0  1  N  N  N  150.007  145.414   92.728   -5.555   2.085  -3.372  C12  XJD   2  
XJD  C13  C3   C  0  1  N  N  N  152.563  144.997  100.296    0.818   0.192   1.714  C13  XJD   3  
XJD  C14  C4   C  0  1  N  N  N  152.639  145.113  101.816    1.851  -0.437   0.815  C14  XJD   4  
XJD  C15  C5   C  0  1  N  N  N  152.881  143.761  102.484    3.244   0.046   1.223  C15  XJD   5  
XJD  C16  C6   C  0  1  N  N  N  151.989  143.573  103.706    4.293  -0.592   0.310  C16  XJD   6  
XJD  C17  C7   C  0  1  N  N  N  152.127  142.204  104.365    5.686  -0.109   0.718  C17  XJD   7  
XJD  C18  C8   C  0  1  N  N  N  150.764  141.570  104.626    6.735  -0.748  -0.194  C18  XJD   8  
XJD  C19  C9   C  0  1  N  N  N  149.893  142.365  105.596    8.128  -0.265   0.214  C19  XJD   9  
XJD  C20  C10  C  0  1  N  N  N  148.407  142.327  105.238    9.177  -0.904  -0.699  C20  XJD  10  
XJD  C21  C11  C  0  1  N  N  N  147.707  141.060  105.729   10.571  -0.421  -0.291  C21  XJD  11  
XJD  C22  C12  C  0  1  N  N  N  146.358  141.293  106.404   11.619  -1.059  -1.203  C22  XJD  12  
XJD  C23  C13  C  0  1  N  N  N  146.296  140.694  107.806   13.012  -0.576  -0.795  C23  XJD  13  
XJD  C25  C14  C  0  1  N  N  N  145.401  141.210  110.142   15.455  -0.732  -1.300  C25  XJD  14  
XJD  N    N1   N  0  1  N  N  N  149.603  145.043   91.381   -6.532   1.236  -2.676  N    XJD  15  
XJD  O    O1   O  0  1  N  N  N  147.166  146.650  100.090   -4.810  -1.794   2.400  O    XJD  16  
XJD  C1   C15  C  0  1  N  N  N  147.743  146.124  107.717  -10.434  -4.561  -1.650  C1   XJD  17  
XJD  C10  C16  C  0  1  N  N  N  151.803  145.694   97.437   -1.870   1.890   1.847  C10  XJD  18  
XJD  C2   C17  C  0  1  N  N  N  147.337  146.949  106.502   -9.236  -3.649  -1.923  C2   XJD  19  
XJD  C24  C18  C  0  1  N  N  N  145.167  141.291  108.639   14.061  -1.215  -1.708  C24  XJD  20  
XJD  C3   C19  C  0  1  N  N  N  147.792  146.313  105.196   -8.436  -3.458  -0.633  C3   XJD  21  
XJD  C4   C20  C  0  1  N  N  N  148.074  147.347  104.115   -7.238  -2.546  -0.907  C4   XJD  22  
XJD  C5   C21  C  0  1  N  N  N  147.693  146.879  102.718   -6.437  -2.355   0.383  C5   XJD  23  
XJD  C6   C22  C  0  1  N  N  N  148.799  147.122  101.705   -5.240  -1.443   0.110  C6   XJD  24  
XJD  C7   C23  C  0  1  N  N  N  148.282  146.977  100.281   -4.451  -1.255   1.380  C7   XJD  25  
XJD  C8   C24  C  0  1  N  N  N  149.564  146.057   98.555   -2.640  -0.351   2.639  C8   XJD  26  
XJD  C9   C25  C  0  1  N  N  R  151.077  145.946   98.761   -1.422   0.554   2.442  C9   XJD  27  
XJD  O1   O2   O  0  1  N  N  N  149.125  147.218   99.198   -3.350  -0.487   1.379  O1   XJD  28  
XJD  O2   O3   O  0  1  N  N  N  151.852  144.318   97.192   -2.603   1.653   0.643  O2   XJD  29  
XJD  O3   O4   O  0  1  N  N  N  151.073  142.208   95.963   -4.100   3.685   0.593  O3   XJD  30  
XJD  O4   O5   O  0  1  N  N  N  149.406  143.962   96.513   -2.037   3.734  -0.861  O4   XJD  31  
XJD  O5   O6   O  0  1  N  N  N  151.049  144.375   94.612   -4.093   2.205  -1.452  O5   XJD  32  
XJD  O6   O7   O  0  1  N  N  N  151.331  144.899   99.648   -0.483  -0.088   1.540  O6   XJD  33  
XJD  O7   O8   O  0  1  N  N  N  153.556  144.991   99.658    1.161   0.950   2.591  O7   XJD  34  
XJD  P    P1   P  0  1  N  N  N  150.821  143.685   96.083   -3.227   2.838  -0.251  P    XJD  35  
XJD  H1   H1   H  0  1  N  N  N  149.088  144.046   94.126   -4.201   3.688  -2.886  H1   XJD  36  
XJD  H2   H2   H  0  1  N  N  N  150.306  143.297   93.039   -5.609   3.563  -1.806  H2   XJD  37  
XJD  H3   H3   H  0  1  N  N  N  151.002  145.881   92.690   -6.068   2.693  -4.117  H3   XJD  38  
XJD  H4   H4   H  0  1  N  N  N  149.281  146.132   93.137   -4.813   1.456  -3.864  H4   XJD  39  
XJD  H5   H5   H  0  1  N  N  N  153.464  145.791  102.079    1.801  -1.521   0.908  H5   XJD  40  
XJD  H6   H6   H  0  1  N  N  N  151.690  145.528  102.188    1.656  -0.151  -0.219  H6   XJD  41  
XJD  H7   H7   H  0  1  N  N  N  152.668  142.961  101.760    3.294   1.131   1.130  H7   XJD  42  
XJD  H8   H8   H  0  1  N  N  N  153.934  143.701  102.797    3.440  -0.239   2.257  H8   XJD  43  
XJD  H9   H9   H  0  1  N  N  N  152.250  144.343  104.447    4.243  -1.677   0.403  H9   XJD  44  
XJD  H10  H10  H  0  1  N  N  N  150.942  143.704  103.395    4.098  -0.307  -0.723  H10  XJD  45  
XJD  H11  H11  H  0  1  N  N  N  152.707  141.545  103.702    5.736   0.976   0.626  H11  XJD  46  
XJD  H12  H12  H  0  1  N  N  N  152.657  142.320  105.322    5.882  -0.395   1.752  H12  XJD  47  
XJD  H13  H13  H  0  1  N  N  N  150.230  141.487  103.668    6.685  -1.833  -0.102  H13  XJD  48  
XJD  H14  H14  H  0  1  N  N  N  150.923  140.565  105.045    6.540  -0.462  -1.228  H14  XJD  49  
XJD  H15  H15  H  0  1  N  N  N  150.021  141.946  106.605    8.178   0.820   0.121  H15  XJD  50  
XJD  H16  H16  H  0  1  N  N  N  150.228  143.413  105.589    8.324  -0.551   1.247  H16  XJD  51  
XJD  H17  H17  H  0  1  N  N  N  147.914  143.199  105.693    9.127  -1.988  -0.606  H17  XJD  52  
XJD  H18  H18  H  0  1  N  N  N  148.309  142.380  104.144    8.982  -0.618  -1.732  H18  XJD  53  
XJD  H19  H19  H  0  1  N  N  N  147.547  140.401  104.863   10.620   0.664  -0.383  H19  XJD  54  
XJD  H20  H20  H  0  1  N  N  N  148.370  140.562  106.452   10.766  -0.706   0.743  H20  XJD  55  
XJD  H21  H21  H  0  1  N  N  N  146.181  142.376  106.475   11.569  -2.144  -1.111  H21  XJD  56  
XJD  H22  H22  H  0  1  N  N  N  145.571  140.833  105.788   11.424  -0.774  -2.237  H22  XJD  57  
XJD  H23  H23  H  0  1  N  N  N  146.137  139.609  107.721   13.062   0.509  -0.888  H23  XJD  58  
XJD  H24  H24  H  0  1  N  N  N  147.252  140.886  108.316   13.208  -0.862   0.238  H24  XJD  59  
XJD  H25  H25  H  0  1  N  N  N  144.547  141.659  110.671   15.505   0.353  -1.392  H25  XJD  60  
XJD  H26  H26  H  0  1  N  N  N  145.505  140.156  110.441   15.650  -1.018  -0.266  H26  XJD  61  
XJD  H27  H27  H  0  1  N  N  N  146.320  141.756  110.400   16.202  -1.187  -1.950  H27  XJD  62  
XJD  H28  H28  H  0  1  N  N  N  149.573  145.860   90.805   -7.005   0.624  -3.323  H28  XJD  63  
XJD  H29  H29  H  0  1  N  N  N  150.262  144.393   91.003   -6.091   0.710  -1.936  H29  XJD  64  
XJD  H31  H31  H  0  1  N  N  N  147.393  146.623  108.633  -10.080  -5.529  -1.295  H31  XJD  65  
XJD  H32  H32  H  0  1  N  N  N  147.291  145.124  107.649  -11.071  -4.106  -0.891  H32  XJD  66  
XJD  H33  H33  H  0  1  N  N  N  148.839  146.030  107.747  -11.004  -4.697  -2.569  H33  XJD  67  
XJD  H34  H34  H  0  1  N  N  N  152.826  146.093   97.497   -2.504   2.412   2.562  H34  XJD  68  
XJD  H35  H35  H  0  1  N  N  N  151.262  146.194   96.620   -0.994   2.500   1.624  H35  XJD  69  
XJD  H36  H36  H  0  1  N  N  N  147.789  147.948  106.586   -8.599  -4.103  -2.682  H36  XJD  70  
XJD  H37  H37  H  0  1  N  N  N  146.241  147.042  106.487   -9.590  -2.681  -2.278  H37  XJD  71  
XJD  H38  H38  H  0  1  N  N  N  145.055  142.350  108.362   14.011  -2.300  -1.615  H38  XJD  72  
XJD  H39  H39  H  0  1  N  N  N  144.239  140.750  108.403   13.866  -0.929  -2.741  H39  XJD  73  
XJD  H40  H40  H  0  1  N  N  N  147.003  145.635  104.839   -9.072  -3.003   0.126  H40  XJD  74  
XJD  H41  H41  H  0  1  N  N  N  148.711  145.739  105.384   -8.082  -4.426  -0.279  H41  XJD  75  
XJD  H42  H42  H  0  1  N  N  N  149.150  147.577  104.125   -6.601  -3.000  -1.666  H42  XJD  76  
XJD  H43  H43  H  0  1  N  N  N  147.502  148.258  104.346   -7.592  -1.578  -1.261  H43  XJD  77  
XJD  H44  H44  H  0  1  N  N  N  146.793  147.423  102.396   -7.074  -1.900   1.142  H44  XJD  78  
XJD  H45  H45  H  0  1  N  N  N  147.477  145.801  102.753   -6.083  -3.323   0.738  H45  XJD  79  
XJD  H46  H46  H  0  1  N  N  N  149.604  146.391  101.871   -4.603  -1.897  -0.649  H46  XJD  80  
XJD  H47  H47  H  0  1  N  N  N  149.194  148.140  101.842   -5.594  -0.475  -0.245  H47  XJD  81  
XJD  H48  H48  H  0  1  N  N  N  149.337  146.117   97.480   -2.313  -1.333   2.979  H48  XJD  82  
XJD  H49  H49  H  0  1  N  N  N  149.063  145.178   98.987   -3.303   0.089   3.384  H49  XJD  83  
XJD  H50  H50  H  0  1  N  N  N  151.440  146.896   99.180   -0.940   0.728   3.405  H50  XJD  84  
XJD  H51  H51  H  0  1  N  N  N  148.942  143.141   96.626   -1.425   3.242  -1.426  H51  XJD  85  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XJD  N    C12  SING  N  N   1  
XJD  C12  C11  SING  N  N   2  
XJD  C11  O5   SING  N  N   3  
XJD  O5   P    SING  N  N   4  
XJD  O3   P    DOUB  N  N   5  
XJD  P    O4   SING  N  N   6  
XJD  P    O2   SING  N  N   7  
XJD  O2   C10  SING  N  N   8  
XJD  C10  C9   SING  N  N   9  
XJD  C8   C9   SING  N  N  10  
XJD  C8   O1   SING  N  N  11  
XJD  C9   O6   SING  N  N  12  
XJD  O1   C7   SING  N  N  13  
XJD  O6   C13  SING  N  N  14  
XJD  O7   C13  DOUB  N  N  15  
XJD  O    C7   DOUB  N  N  16  
XJD  C7   C6   SING  N  N  17  
XJD  C13  C14  SING  N  N  18  
XJD  C6   C5   SING  N  N  19  
XJD  C14  C15  SING  N  N  20  
XJD  C15  C16  SING  N  N  21  
XJD  C5   C4   SING  N  N  22  
XJD  C16  C17  SING  N  N  23  
XJD  C4   C3   SING  N  N  24  
XJD  C17  C18  SING  N  N  25  
XJD  C18  C19  SING  N  N  26  
XJD  C3   C2   SING  N  N  27  
XJD  C20  C19  SING  N  N  28  
XJD  C20  C21  SING  N  N  29  
XJD  C21  C22  SING  N  N  30  
XJD  C22  C23  SING  N  N  31  
XJD  C2   C1   SING  N  N  32  
XJD  C23  C24  SING  N  N  33  
XJD  C24  C25  SING  N  N  34  
XJD  C11  H1   SING  N  N  35  
XJD  C11  H2   SING  N  N  36  
XJD  C12  H3   SING  N  N  37  
XJD  C12  H4   SING  N  N  38  
XJD  C14  H5   SING  N  N  39  
XJD  C14  H6   SING  N  N  40  
XJD  C15  H7   SING  N  N  41  
XJD  C15  H8   SING  N  N  42  
XJD  C16  H9   SING  N  N  43  
XJD  C16  H10  SING  N  N  44  
XJD  C17  H11  SING  N  N  45  
XJD  C17  H12  SING  N  N  46  
XJD  C18  H13  SING  N  N  47  
XJD  C18  H14  SING  N  N  48  
XJD  C19  H15  SING  N  N  49  
XJD  C19  H16  SING  N  N  50  
XJD  C20  H17  SING  N  N  51  
XJD  C20  H18  SING  N  N  52  
XJD  C21  H19  SING  N  N  53  
XJD  C21  H20  SING  N  N  54  
XJD  C22  H21  SING  N  N  55  
XJD  C22  H22  SING  N  N  56  
XJD  C23  H23  SING  N  N  57  
XJD  C23  H24  SING  N  N  58  
XJD  C25  H25  SING  N  N  59  
XJD  C25  H26  SING  N  N  60  
XJD  C25  H27  SING  N  N  61  
XJD  N    H28  SING  N  N  62  
XJD  N    H29  SING  N  N  63  
XJD  C1   H31  SING  N  N  64  
XJD  C1   H32  SING  N  N  65  
XJD  C1   H33  SING  N  N  66  
XJD  C10  H34  SING  N  N  67  
XJD  C10  H35  SING  N  N  68  
XJD  C2   H36  SING  N  N  69  
XJD  C2   H37  SING  N  N  70  
XJD  C24  H38  SING  N  N  71  
XJD  C24  H39  SING  N  N  72  
XJD  C3   H40  SING  N  N  73  
XJD  C3   H41  SING  N  N  74  
XJD  C4   H42  SING  N  N  75  
XJD  C4   H43  SING  N  N  76  
XJD  C5   H44  SING  N  N  77  
XJD  C5   H45  SING  N  N  78  
XJD  C6   H46  SING  N  N  79  
XJD  C6   H47  SING  N  N  80  
XJD  C8   H48  SING  N  N  81  
XJD  C8   H49  SING  N  N  82  
XJD  C9   H50  SING  N  N  83  
XJD  O4   H51  SING  N  N  84  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XJD  SMILES            ACDLabs               12.01  "C(OP(OCC(COC(=O)CCCCCC)OC(CCCCCCCCCCCC)=O)(=O)O)CN"  
XJD  InChI             InChI                 1.03   "InChI=1S/C25H50NO8P/c1-3-5-7-9-10-11-12-13-14-16-18-25(28)34-23(22-33-35(29,30)32-20-19-26)21-31-24(27)17-15-8-6-4-2/h23H,3-22,26H2,1-2H3,(H,29,30)/t23-/m1/s1"  
XJD  InChIKey          InChI                 1.03   DZBORIDLQAEVCV-HSZRJFAPSA-N  
XJD  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P](O)(=O)OCCN"  
XJD  SMILES            CACTVS                3.385  "CCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCC)CO[P](O)(=O)OCCN"  
XJD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)COP(=O)(O)OCCN"  
XJD  SMILES            "OpenEye OEToolkits"  2.0.7  "CCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCC)COP(=O)(O)OCCN"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XJD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(10R,13S)-16-amino-13-hydroxy-7,13-dioxo-8,12,14-trioxa-13lambda~5~-phosphahexadecan-10-yl tridecanoate"  
XJD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "[(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-heptanoyloxy-propan-2-yl] tridecanoate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XJD  "Create component"  2020-12-17  RCSB  
XJD  "Initial release"   2021-09-22  RCSB  
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