data_XKD
#

_chem_comp.id                                   XKD
_chem_comp.name                                 N-methyl-D-alaninamide
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C4 H10 N2 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2020-12-17
_chem_comp.pdbx_modified_date                   2021-06-18
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       102.135
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XKD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5S87
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XKD  C01   C1   C  0  1  N  N  N  -1.840  33.853  -22.519   2.672  -0.155   0.039  C01   XKD   1  
XKD  N02   N1   N  0  1  N  N  N  -3.203  33.816  -22.122   1.312  -0.601  -0.277  N02   XKD   2  
XKD  C03   C2   C  0  1  N  N  N  -4.094  34.962  -22.159   0.268   0.225  -0.075  C03   XKD   3  
XKD  O04   O1   O  0  1  N  N  N  -5.217  34.758  -21.837   0.453   1.339   0.369  O04   XKD   4  
XKD  C05   C3   C  0  1  N  N  R  -3.740  36.385  -22.545  -1.130  -0.233  -0.400  C05   XKD   5  
XKD  C06   C4   C  0  1  N  N  N  -2.362  36.418  -23.163  -1.469  -1.469   0.436  C06   XKD   6  
XKD  N07   N2   N  0  1  N  N  N  -4.777  36.963  -23.398  -2.083   0.842  -0.093  N07   XKD   7  
XKD  H011  H1   H  0  0  N  N  N  -1.394  32.856  -22.393   3.378  -0.953  -0.189  H011  XKD   8  
XKD  H012  H2   H  0  0  N  N  N  -1.774  34.154  -23.575   2.913   0.725  -0.557  H012  XKD   9  
XKD  H013  H3   H  0  0  N  N  N  -1.296  34.579  -21.896   2.735   0.094   1.098  H013  XKD  10  
XKD  H021  H4   H  0  0  N  N  N  -3.573  32.946  -21.796   1.165  -1.492  -0.632  H021  XKD  11  
XKD  H051  H5   H  0  0  N  N  N  -3.697  36.974  -21.617  -1.194  -0.483  -1.459  H051  XKD  12  
XKD  H062  H6   H  0  0  N  N  N  -2.109  37.452  -23.441  -2.481  -1.801   0.201  H062  XKD  13  
XKD  H061  H7   H  0  0  N  N  N  -1.626  36.043  -22.437  -0.763  -2.267   0.208  H061  XKD  14  
XKD  H063  H8   H  0  0  N  N  N  -2.348  35.783  -24.061  -1.406  -1.219   1.495  H063  XKD  15  
XKD  H072  H9   H  0  0  N  N  N  -4.525  37.900  -23.641  -1.842   1.690  -0.584  H072  XKD  16  
XKD  H1    H10  H  0  1  N  N  N  -4.867  36.416  -24.230  -3.028   0.559  -0.303  H1    XKD  17  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XKD  N02  C01   SING  N  N   1  
XKD  C03  N02   SING  N  N   2  
XKD  O04  C03   DOUB  N  N   3  
XKD  C05  C03   SING  N  N   4  
XKD  C06  C05   SING  N  N   5  
XKD  N07  C05   SING  N  N   6  
XKD  C01  H011  SING  N  N   7  
XKD  C01  H012  SING  N  N   8  
XKD  C01  H013  SING  N  N   9  
XKD  N02  H021  SING  N  N  10  
XKD  C05  H051  SING  N  N  11  
XKD  C06  H062  SING  N  N  12  
XKD  C06  H061  SING  N  N  13  
XKD  C06  H063  SING  N  N  14  
XKD  N07  H072  SING  N  N  15  
XKD  N07  H1    SING  N  N  16  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XKD  SMILES            ACDLabs               12.01  "CNC(=O)C(C)N"  
XKD  InChI             InChI                 1.03   "InChI=1S/C4H10N2O/c1-3(5)4(7)6-2/h3H,5H2,1-2H3,(H,6,7)/t3-/m1/s1"  
XKD  InChIKey          InChI                 1.03   CKQYFZPCICOPMQ-GSVOUGTGSA-N  
XKD  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)[C@@H](C)N"  
XKD  SMILES            CACTVS                3.385  "CNC(=O)[CH](C)N"  
XKD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "C[C@H](C(=O)NC)N"  
XKD  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(C(=O)NC)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XKD  "SYSTEMATIC NAME"  ACDLabs               12.01  N-methyl-D-alaninamide  
XKD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{R})-2-azanyl-~{N}-methyl-propanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XKD  "Create component"  2020-12-17  RCSB  
XKD  "Initial release"   2021-06-23  RCSB  
##
