data_YOD
#

_chem_comp.id                                   YOD
_chem_comp.name                                 "(1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H36 N2 O S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-17
_chem_comp.pdbx_modified_date                   2021-11-19
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       412.631
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YOD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7LYD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YOD  C21  C1   C  0  1  N  N  N  -42.934  18.173   -7.637   3.689   0.515   0.183  C21  YOD   1  
YOD  C22  C2   C  0  1  N  N  N  -43.430  19.129   -6.537   4.618   0.059   1.311  C22  YOD   2  
YOD  C23  C3   C  0  1  N  N  N  -42.936  20.568   -6.778   6.065   0.397   0.947  C23  YOD   3  
YOD  C24  C4   C  0  1  N  N  N  -41.405  20.606   -6.898   6.446  -0.322  -0.350  C24  YOD   4  
YOD  C26  C5   C  0  1  N  N  N  -40.981  19.725   -8.086   5.517   0.134  -1.477  C26  YOD   5  
YOD  C27  C6   C  0  1  N  N  N  -41.413  18.266   -7.837   4.070  -0.203  -1.113  C27  YOD   6  
YOD  C11  C7   C  0  1  Y  N  N  -46.767  12.159   -9.513  -2.185  -2.637  -0.084  C11  YOD   7  
YOD  C13  C8   C  0  1  Y  N  N  -47.138  11.727  -11.884  -3.474  -4.209  -1.349  C13  YOD   8  
YOD  C14  C9   C  0  1  Y  N  N  -48.383  11.188  -11.611  -2.741  -5.247  -0.804  C14  YOD   9  
YOD  C29  C10  C  0  1  N  N  N  -45.311  14.682   -6.251  -1.081   1.514  -0.389  C29  YOD  10  
YOD  C15  C11  C  0  1  Y  N  N  -48.816  11.130  -10.291  -1.728  -4.980   0.096  C15  YOD  11  
YOD  C10  C12  C  0  1  N  N  N  -44.635  11.807   -8.174  -2.083  -1.054   1.822  C10  YOD  12  
YOD  C12  C13  C  0  1  Y  N  N  -46.344  12.205  -10.841  -3.196  -2.904  -0.989  C12  YOD  13  
YOD  C01  C14  C  0  1  N  N  N  -46.152  11.313   -2.622  -4.317   4.790  -1.254  C01  YOD  14  
YOD  C03  C15  C  0  1  N  N  N  -46.494  13.360   -4.545  -3.475   2.123  -0.766  C03  YOD  15  
YOD  C04  C16  C  0  1  N  N  S  -45.747  13.245   -5.882  -2.528   1.177  -0.025  C04  YOD  16  
YOD  C05  C17  C  0  1  N  N  N  -44.467  12.397   -5.740  -2.725   1.337   1.484  C05  YOD  17  
YOD  C06  C18  C  0  1  N  N  S  -43.717  12.387   -7.085  -1.779   0.391   2.225  C06  YOD  18  
YOD  C07  C19  C  0  1  N  N  N  -43.289  13.815   -7.486  -0.332   0.728   1.861  C07  YOD  19  
YOD  C08  C20  C  0  1  N  N  N  -46.648  12.662   -6.998  -2.832  -0.268  -0.428  C08  YOD  20  
YOD  C09  C21  C  0  1  N  N  S  -45.895  12.677   -8.358  -1.886  -1.214   0.313  C09  YOD  21  
YOD  C16  C22  C  0  1  Y  N  N  -48.028  11.614   -9.263  -1.453  -3.675   0.461  C16  YOD  22  
YOD  C17  C23  C  0  1  N  N  N  -45.472  14.123   -8.685  -0.439  -0.877  -0.051  C17  YOD  23  
YOD  C18  C24  C  0  1  N  N  R  -44.544  14.692   -7.591  -0.135   0.568   0.353  C18  YOD  24  
YOD  C19  C25  C  0  1  N  N  N  -44.279  16.147   -7.961   1.291   0.900  -0.006  C19  YOD  25  
YOD  N20  N1   N  0  1  N  N  N  -43.270  16.780   -7.328   2.303   0.192   0.532  N20  YOD  26  
YOD  N25  N2   N  0  1  N  N  N  -40.959  21.991   -7.131   7.836   0.002  -0.699  N25  YOD  27  
YOD  O28  O1   O  0  1  N  N  N  -44.959  16.706   -8.820   1.527   1.805  -0.778  O28  YOD  28  
YOD  S02  S1   S  0  1  N  N  N  -47.367  11.766   -3.993  -3.114   3.835  -0.288  S02  YOD  29  
YOD  H1   H1   H  0  1  N  N  N  -43.421  18.458   -8.581   3.787   1.592   0.045  H1   YOD  30  
YOD  H2   H2   H  0  1  N  N  N  -44.530  19.125   -6.529   4.347   0.571   2.234  H2   YOD  31  
YOD  H3   H3   H  0  1  N  N  N  -43.055  18.780   -5.564   4.520  -1.017   1.449  H3   YOD  32  
YOD  H4   H4   H  0  1  N  N  N  -43.248  21.202   -5.935   6.164   1.473   0.808  H4   YOD  33  
YOD  H5   H5   H  0  1  N  N  N  -43.380  20.951   -7.709   6.727   0.072   1.750  H5   YOD  34  
YOD  H6   H6   H  0  1  N  N  N  -40.957  20.212   -5.974   6.348  -1.398  -0.211  H6   YOD  35  
YOD  H7   H7   H  0  1  N  N  N  -39.888  19.767   -8.200   5.615   1.211  -1.616  H7   YOD  36  
YOD  H8   H8   H  0  1  N  N  N  -41.460  20.096   -9.004   5.788  -0.378  -2.400  H8   YOD  37  
YOD  H9   H9   H  0  1  N  N  N  -41.125  17.652   -8.703   3.972  -1.280  -0.974  H9   YOD  38  
YOD  H10  H10  H  0  1  N  N  N  -40.907  17.889   -6.936   3.408   0.121  -1.916  H10  YOD  39  
YOD  H11  H11  H  0  1  N  N  N  -46.782  11.778  -12.902  -4.266  -4.418  -2.053  H11  YOD  40  
YOD  H12  H12  H  0  1  N  N  N  -49.008  10.818  -12.410  -2.959  -6.267  -1.086  H12  YOD  41  
YOD  H13  H13  H  0  1  N  N  N  -44.658  15.076   -5.458  -0.941   1.400  -1.464  H13  YOD  42  
YOD  H14  H14  H  0  1  N  N  N  -46.204  15.318   -6.341  -0.865   2.543  -0.101  H14  YOD  43  
YOD  H15  H15  H  0  1  N  N  N  -49.781  10.701  -10.066  -1.155  -5.791   0.522  H15  YOD  44  
YOD  H16  H16  H  0  1  N  N  N  -44.939  10.791   -7.884  -1.409  -1.728   2.350  H16  YOD  45  
YOD  H17  H17  H  0  1  N  N  N  -44.084  11.767   -9.125  -3.114  -1.294   2.081  H17  YOD  46  
YOD  H18  H18  H  0  1  N  N  N  -45.374  12.622  -11.069  -3.768  -2.092  -1.414  H18  YOD  47  
YOD  H19  H19  H  0  1  N  N  N  -46.474  10.378   -2.140  -4.155   4.609  -2.316  H19  YOD  48  
YOD  H20  H20  H  0  1  N  N  N  -45.148  11.177   -3.052  -5.327   4.483  -0.982  H20  YOD  49  
YOD  H21  H21  H  0  1  N  N  N  -46.125  12.120   -1.875  -4.191   5.852  -1.043  H21  YOD  50  
YOD  H22  H22  H  0  1  N  N  N  -45.767  13.641   -3.768  -3.334   2.009  -1.841  H22  YOD  51  
YOD  H23  H23  H  0  1  N  N  N  -47.252  14.151   -4.642  -4.506   1.883  -0.507  H23  YOD  52  
YOD  H24  H24  H  0  1  N  N  N  -44.736  11.368   -5.461  -2.509   2.366   1.771  H24  YOD  53  
YOD  H25  H25  H  0  1  N  N  N  -43.822  12.831   -4.962  -3.757   1.097   1.743  H25  YOD  54  
YOD  H26  H26  H  0  1  N  N  N  -42.821  11.755   -6.994  -1.920   0.505   3.300  H26  YOD  55  
YOD  H27  H27  H  0  1  N  N  N  -42.774  13.788   -8.457  -0.115   1.757   2.149  H27  YOD  56  
YOD  H28  H28  H  0  1  N  N  N  -42.612  14.227   -6.723   0.342   0.054   2.390  H28  YOD  57  
YOD  H29  H29  H  0  1  N  N  N  -47.562  13.269   -7.082  -3.863  -0.508  -0.169  H29  YOD  58  
YOD  H30  H30  H  0  1  N  N  N  -46.918  11.626   -6.743  -2.692  -0.382  -1.503  H30  YOD  59  
YOD  H31  H31  H  0  1  N  N  N  -48.395  11.570   -8.248  -0.666  -3.467   1.171  H31  YOD  60  
YOD  H32  H32  H  0  1  N  N  N  -44.940  14.133   -9.648   0.235  -1.551   0.478  H32  YOD  61  
YOD  H33  H33  H  0  1  N  N  N  -46.371  14.753   -8.757  -0.298  -0.991  -1.125  H33  YOD  62  
YOD  H34  H34  H  0  1  N  N  N  -42.741  16.290   -6.635   2.115  -0.532   1.150  H34  YOD  63  
YOD  H35  H35  H  0  1  N  N  N  -41.234  22.565   -6.359   8.111  -0.460  -1.552  H35  YOD  64  
YOD  H36  H36  H  0  1  N  N  N  -39.963  22.010   -7.222   7.967   1.000  -0.770  H36  YOD  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YOD  C13  C14  DOUB  Y  N   1  
YOD  C13  C12  SING  Y  N   2  
YOD  C14  C15  SING  Y  N   3  
YOD  C12  C11  DOUB  Y  N   4  
YOD  C15  C16  DOUB  Y  N   5  
YOD  C11  C16  SING  Y  N   6  
YOD  C11  C09  SING  N  N   7  
YOD  O28  C19  DOUB  N  N   8  
YOD  C17  C09  SING  N  N   9  
YOD  C17  C18  SING  N  N  10  
YOD  C09  C10  SING  N  N  11  
YOD  C09  C08  SING  N  N  12  
YOD  C10  C06  SING  N  N  13  
YOD  C26  C27  SING  N  N  14  
YOD  C26  C24  SING  N  N  15  
YOD  C19  C18  SING  N  N  16  
YOD  C19  N20  SING  N  N  17  
YOD  C27  C21  SING  N  N  18  
YOD  C21  N20  SING  N  N  19  
YOD  C21  C22  SING  N  N  20  
YOD  C18  C07  SING  N  N  21  
YOD  C18  C29  SING  N  N  22  
YOD  C07  C06  SING  N  N  23  
YOD  N25  C24  SING  N  N  24  
YOD  C06  C05  SING  N  N  25  
YOD  C08  C04  SING  N  N  26  
YOD  C24  C23  SING  N  N  27  
YOD  C23  C22  SING  N  N  28  
YOD  C29  C04  SING  N  N  29  
YOD  C04  C05  SING  N  N  30  
YOD  C04  C03  SING  N  N  31  
YOD  C03  S02  SING  N  N  32  
YOD  S02  C01  SING  N  N  33  
YOD  C21  H1   SING  N  N  34  
YOD  C22  H2   SING  N  N  35  
YOD  C22  H3   SING  N  N  36  
YOD  C23  H4   SING  N  N  37  
YOD  C23  H5   SING  N  N  38  
YOD  C24  H6   SING  N  N  39  
YOD  C26  H7   SING  N  N  40  
YOD  C26  H8   SING  N  N  41  
YOD  C27  H9   SING  N  N  42  
YOD  C27  H10  SING  N  N  43  
YOD  C13  H11  SING  N  N  44  
YOD  C14  H12  SING  N  N  45  
YOD  C29  H13  SING  N  N  46  
YOD  C29  H14  SING  N  N  47  
YOD  C15  H15  SING  N  N  48  
YOD  C10  H16  SING  N  N  49  
YOD  C10  H17  SING  N  N  50  
YOD  C12  H18  SING  N  N  51  
YOD  C01  H19  SING  N  N  52  
YOD  C01  H20  SING  N  N  53  
YOD  C01  H21  SING  N  N  54  
YOD  C03  H22  SING  N  N  55  
YOD  C03  H23  SING  N  N  56  
YOD  C05  H24  SING  N  N  57  
YOD  C05  H25  SING  N  N  58  
YOD  C06  H26  SING  N  N  59  
YOD  C07  H27  SING  N  N  60  
YOD  C07  H28  SING  N  N  61  
YOD  C08  H29  SING  N  N  62  
YOD  C08  H30  SING  N  N  63  
YOD  C16  H31  SING  N  N  64  
YOD  C17  H32  SING  N  N  65  
YOD  C17  H33  SING  N  N  66  
YOD  N20  H34  SING  N  N  67  
YOD  N25  H35  SING  N  N  68  
YOD  N25  H36  SING  N  N  69  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YOD  SMILES            ACDLabs               12.01  "O=C(NC1CCC(N)CC1)C12CC3CC(CC(CSC)(C3)C1)(C2)c1ccccc1"  
YOD  InChI             InChI                 1.03   "InChI=1S/C25H36N2OS/c1-29-17-23-11-18-12-24(14-23,19-5-3-2-4-6-19)16-25(13-18,15-23)22(28)27-21-9-7-20(26)8-10-21/h2-6,18,20-21H,7-17,26H2,1H3,(H,27,28)/t18-,20-,21-,23-,24+,25-/m0/s1"  
YOD  InChIKey          InChI                 1.03   DETLZYCOWYAPEH-ONOIFOFISA-N  
YOD  SMILES_CANONICAL  CACTVS                3.385  "CSC[C@]12C[C@@H]3C[C@](C1)(C[C@@](C3)(C2)c4ccccc4)C(=O)N[C@H]5CC[C@H](N)CC5"  
YOD  SMILES            CACTVS                3.385  "CSC[C]12C[CH]3C[C](C1)(C[C](C3)(C2)c4ccccc4)C(=O)N[CH]5CC[CH](N)CC5"  
YOD  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CSC[C@@]12C[C@H]3C[C@@](C1)(C[C@](C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5"  
YOD  SMILES            "OpenEye OEToolkits"  2.0.7  "CSCC12CC3CC(C1)(CC(C3)(C2)C(=O)NC4CCC(CC4)N)c5ccccc5"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YOD  "SYSTEMATIC NAME"  ACDLabs               12.01  "(1R,3S,5S,7S)-N-[(1r,4R)-4-aminocyclohexyl]-3-[(methylsulfanyl)methyl]-5-phenyladamantane-1-carboxamide"  
YOD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(1~{R},3~{S},5~{S},7~{S})-~{N}-(4-azanylcyclohexyl)-3-(methylsulfanylmethyl)-5-phenyl-adamantane-1-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YOD  "Create component"  2021-03-17  RCSB  
YOD  "Initial release"   2021-11-24  RCSB  
##
